Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03105

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03095 and CSW01_03100 are separated by 55 nucleotidesCSW01_03100 and CSW01_03105 are separated by 295 nucleotidesCSW01_03105 and CSW01_03110 are separated by 74 nucleotidesCSW01_03110 and CSW01_03115 are separated by 147 nucleotides CSW01_03095: CSW01_03095 - hypothetical protein, at 611,066 to 611,251 _03095 CSW01_03100: CSW01_03100 - TetR/AcrR family transcriptional regulator, at 611,307 to 611,918 _03100 CSW01_03105: CSW01_03105 - hypoxanthine phosphoribosyltransferase, at 612,214 to 612,747 _03105 CSW01_03110: CSW01_03110 - carbonate dehydratase, at 612,822 to 613,490 _03110 CSW01_03115: CSW01_03115 - SulP family inorganic anion transporter, at 613,638 to 615,284 _03115 Position (kb) 612 613Strain fitness (log2 ratio) -2 -1 0 1 2at 611.280 kb on + strandat 611.287 kb on + strandat 611.292 kb on + strandat 611.295 kb on - strandat 611.337 kb on - strandat 611.352 kb on + strandat 611.352 kb on + strandat 611.352 kb on + strandat 611.352 kb on + strandat 611.352 kb on + strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.360 kb on - strandat 611.390 kb on - strand, within CSW01_03100at 611.401 kb on + strand, within CSW01_03100at 611.417 kb on + strand, within CSW01_03100at 611.561 kb on - strand, within CSW01_03100at 611.580 kb on - strand, within CSW01_03100at 611.587 kb on - strand, within CSW01_03100at 611.685 kb on + strand, within CSW01_03100at 611.692 kb on - strand, within CSW01_03100at 611.732 kb on + strand, within CSW01_03100at 611.751 kb on + strand, within CSW01_03100at 611.922 kb on + strandat 611.930 kb on - strandat 611.930 kb on - strandat 611.930 kb on - strandat 611.930 kb on - strandat 612.012 kb on - strandat 612.012 kb on - strandat 612.085 kb on + strandat 612.085 kb on + strandat 612.099 kb on + strandat 612.099 kb on + strandat 612.163 kb on - strandat 612.167 kb on + strandat 612.193 kb on + strandat 612.212 kb on + strandat 612.282 kb on + strand, within CSW01_03105at 612.410 kb on + strand, within CSW01_03105at 612.420 kb on + strand, within CSW01_03105at 612.437 kb on + strand, within CSW01_03105at 612.448 kb on - strand, within CSW01_03105at 612.477 kb on + strand, within CSW01_03105at 612.566 kb on + strand, within CSW01_03105at 612.575 kb on - strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.600 kb on - strand, within CSW01_03105at 612.610 kb on - strand, within CSW01_03105at 612.711 kb on + strandat 612.726 kb on + strandat 612.727 kb on + strandat 612.793 kb on - strandat 612.795 kb on + strandat 612.803 kb on - strandat 612.803 kb on - strandat 612.810 kb on - strandat 612.869 kb on - strandat 612.892 kb on + strand, within CSW01_03110at 612.900 kb on - strand, within CSW01_03110at 612.907 kb on - strand, within CSW01_03110at 612.917 kb on - strand, within CSW01_03110at 612.946 kb on - strand, within CSW01_03110at 612.947 kb on - strand, within CSW01_03110at 612.994 kb on - strand, within CSW01_03110at 613.012 kb on - strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.068 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.111 kb on - strand, within CSW01_03110at 613.111 kb on - strand, within CSW01_03110at 613.263 kb on + strand, within CSW01_03110at 613.271 kb on - strand, within CSW01_03110at 613.323 kb on + strand, within CSW01_03110at 613.442 kb on + strandat 613.442 kb on + strandat 613.459 kb on - strandat 613.570 kb on + strandat 613.622 kb on + strandat 613.682 kb on + strandat 613.690 kb on - strandat 613.716 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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611,280 + +0.9
611,287 + +0.1
611,292 + +0.2
611,295 - -0.2
611,337 - +0.7
611,352 + +1.0
611,352 + -0.0
611,352 + +0.5
611,352 + +0.5
611,352 + +0.8
611,360 - -0.1
611,360 - +0.2
611,360 - -0.3
611,360 - +0.8
611,360 - +0.7
611,360 - +0.1
611,390 - CSW01_03100 0.14 -0.2
611,401 + CSW01_03100 0.15 +2.1
611,417 + CSW01_03100 0.18 +1.2
611,561 - CSW01_03100 0.42 +0.6
611,580 - CSW01_03100 0.45 +0.5
611,587 - CSW01_03100 0.46 +0.3
611,685 + CSW01_03100 0.62 -0.2
611,692 - CSW01_03100 0.63 +0.9
611,732 + CSW01_03100 0.69 +0.6
611,751 + CSW01_03100 0.73 +0.6
611,922 + +0.3
611,930 - +0.9
611,930 - +0.4
611,930 - +0.0
611,930 - +0.7
612,012 - +0.5
612,012 - +0.4
612,085 + +1.4
612,085 + -0.4
612,099 + +0.1
612,099 + -0.9
612,163 - +0.5
612,167 + -0.1
612,193 + +0.3
612,212 + -0.6
612,282 + CSW01_03105 0.13 -0.5
612,410 + CSW01_03105 0.37 +0.1
612,420 + CSW01_03105 0.39 +1.4
612,437 + CSW01_03105 0.42 -1.5
612,448 - CSW01_03105 0.44 -1.0
612,477 + CSW01_03105 0.49 -1.0
612,566 + CSW01_03105 0.66 +1.4
612,575 - CSW01_03105 0.68 -0.4
612,592 + CSW01_03105 0.71 +0.2
612,592 + CSW01_03105 0.71 -0.5
612,592 + CSW01_03105 0.71 +0.3
612,592 + CSW01_03105 0.71 +0.2
612,592 + CSW01_03105 0.71 +0.2
612,600 - CSW01_03105 0.72 -0.3
612,610 - CSW01_03105 0.74 -1.2
612,711 + +0.0
612,726 + -0.6
612,727 + -0.1
612,793 - -0.1
612,795 + -0.2
612,803 - -0.0
612,803 - -0.2
612,810 - +0.2
612,869 - -0.4
612,892 + CSW01_03110 0.10 +0.1
612,900 - CSW01_03110 0.12 +0.0
612,907 - CSW01_03110 0.13 +0.8
612,917 - CSW01_03110 0.14 +0.7
612,946 - CSW01_03110 0.19 -0.5
612,947 - CSW01_03110 0.19 +0.6
612,994 - CSW01_03110 0.26 +0.7
613,012 - CSW01_03110 0.28 +0.0
613,020 + CSW01_03110 0.30 -1.8
613,020 + CSW01_03110 0.30 +1.1
613,020 + CSW01_03110 0.30 -0.0
613,020 + CSW01_03110 0.30 +1.9
613,028 - CSW01_03110 0.31 +1.0
613,028 - CSW01_03110 0.31 +0.8
613,028 - CSW01_03110 0.31 +0.6
613,028 - CSW01_03110 0.31 +0.2
613,068 + CSW01_03110 0.37 -0.6
613,103 + CSW01_03110 0.42 -0.2
613,103 + CSW01_03110 0.42 +0.5
613,103 + CSW01_03110 0.42 -0.6
613,103 + CSW01_03110 0.42 +0.1
613,111 - CSW01_03110 0.43 +0.6
613,111 - CSW01_03110 0.43 -0.2
613,263 + CSW01_03110 0.66 -0.3
613,271 - CSW01_03110 0.67 +0.5
613,323 + CSW01_03110 0.75 +0.5
613,442 + -0.4
613,442 + -0.2
613,459 - +0.3
613,570 + +0.5
613,622 + +0.4
613,682 + -1.5
613,690 - +0.2
613,716 + +0.2

Or see this region's nucleotide sequence