Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02805

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02795 and CSW01_02800 are separated by 108 nucleotidesCSW01_02800 and CSW01_02805 overlap by 4 nucleotidesCSW01_02805 and CSW01_02810 overlap by 4 nucleotidesCSW01_02810 and CSW01_02815 are separated by 29 nucleotides CSW01_02795: CSW01_02795 - undecaprenyl-diphosphatase, at 557,606 to 558,409 _02795 CSW01_02800: CSW01_02800 - cell division protein FtsB, at 558,518 to 558,808 _02800 CSW01_02805: CSW01_02805 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 558,805 to 559,503 _02805 CSW01_02810: CSW01_02810 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 559,500 to 559,976 _02810 CSW01_02815: CSW01_02815 - tRNA pseudouridine(13) synthase TruD, at 560,006 to 561,091 _02815 Position (kb) 558 559 560Strain fitness (log2 ratio) -1 0 1 2at 557.878 kb on + strand, within CSW01_02795at 557.924 kb on + strand, within CSW01_02795at 557.943 kb on + strand, within CSW01_02795at 557.943 kb on + strand, within CSW01_02795at 557.951 kb on - strand, within CSW01_02795at 557.951 kb on - strand, within CSW01_02795at 557.951 kb on - strand, within CSW01_02795at 557.972 kb on - strand, within CSW01_02795at 557.987 kb on - strand, within CSW01_02795at 558.005 kb on - strand, within CSW01_02795at 558.013 kb on + strand, within CSW01_02795at 558.021 kb on - strand, within CSW01_02795at 558.021 kb on - strand, within CSW01_02795at 558.021 kb on - strand, within CSW01_02795at 558.120 kb on + strand, within CSW01_02795at 558.132 kb on + strand, within CSW01_02795at 558.140 kb on - strand, within CSW01_02795at 558.140 kb on - strand, within CSW01_02795at 558.145 kb on - strand, within CSW01_02795at 558.224 kb on + strand, within CSW01_02795at 558.224 kb on - strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.242 kb on + strand, within CSW01_02795at 558.250 kb on - strand, within CSW01_02795at 558.250 kb on - strand, within CSW01_02795at 558.269 kb on + strand, within CSW01_02795at 558.293 kb on + strand, within CSW01_02795at 558.383 kb on - strandat 558.383 kb on - strandat 558.506 kb on - strandat 558.515 kb on + strandat 558.789 kb on + strandat 558.802 kb on + strandat 558.807 kb on + strandat 559.971 kb on + strandat 559.971 kb on + strandat 559.979 kb on - strandat 559.979 kb on - strandat 560.032 kb on - strandat 560.059 kb on + strandat 560.059 kb on + strandat 560.086 kb on + strandat 560.102 kb on + strandat 560.102 kb on + strandat 560.110 kb on - strandat 560.136 kb on + strand, within CSW01_02815at 560.162 kb on + strand, within CSW01_02815at 560.162 kb on + strand, within CSW01_02815at 560.172 kb on - strand, within CSW01_02815at 560.269 kb on + strand, within CSW01_02815at 560.269 kb on + strand, within CSW01_02815at 560.277 kb on - strand, within CSW01_02815at 560.327 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.444 kb on + strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.452 kb on - strand, within CSW01_02815at 560.454 kb on - strand, within CSW01_02815

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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557,878 + CSW01_02795 0.34 -1.1
557,924 + CSW01_02795 0.40 +0.5
557,943 + CSW01_02795 0.42 +0.1
557,943 + CSW01_02795 0.42 +0.6
557,951 - CSW01_02795 0.43 -1.1
557,951 - CSW01_02795 0.43 -0.5
557,951 - CSW01_02795 0.43 +0.0
557,972 - CSW01_02795 0.46 -0.5
557,987 - CSW01_02795 0.47 +0.4
558,005 - CSW01_02795 0.50 +1.6
558,013 + CSW01_02795 0.51 -0.0
558,021 - CSW01_02795 0.52 -0.1
558,021 - CSW01_02795 0.52 +1.7
558,021 - CSW01_02795 0.52 +0.0
558,120 + CSW01_02795 0.64 +0.7
558,132 + CSW01_02795 0.65 -0.2
558,140 - CSW01_02795 0.66 +0.8
558,140 - CSW01_02795 0.66 +0.9
558,145 - CSW01_02795 0.67 +0.4
558,224 + CSW01_02795 0.77 +0.1
558,224 - CSW01_02795 0.77 +1.6
558,242 + CSW01_02795 0.79 +0.5
558,242 + CSW01_02795 0.79 +0.0
558,242 + CSW01_02795 0.79 -0.1
558,242 + CSW01_02795 0.79 +0.4
558,250 - CSW01_02795 0.80 +0.1
558,250 - CSW01_02795 0.80 +0.4
558,269 + CSW01_02795 0.82 +1.3
558,293 + CSW01_02795 0.85 +0.3
558,383 - +0.2
558,383 - +0.9
558,506 - -0.1
558,515 + -0.6
558,789 + -0.0
558,802 + +1.9
558,807 + -0.0
559,971 + -0.2
559,971 + +0.3
559,979 - -1.1
559,979 - +0.3
560,032 - -0.8
560,059 + -1.1
560,059 + -0.3
560,086 + -0.2
560,102 + +0.4
560,102 + -0.4
560,110 - +0.7
560,136 + CSW01_02815 0.12 +0.2
560,162 + CSW01_02815 0.14 -0.0
560,162 + CSW01_02815 0.14 -0.2
560,172 - CSW01_02815 0.15 -0.3
560,269 + CSW01_02815 0.24 -0.5
560,269 + CSW01_02815 0.24 +0.2
560,277 - CSW01_02815 0.25 -0.1
560,327 + CSW01_02815 0.30 +0.8
560,444 + CSW01_02815 0.40 +0.2
560,444 + CSW01_02815 0.40 -0.6
560,444 + CSW01_02815 0.40 +0.8
560,444 + CSW01_02815 0.40 +0.2
560,444 + CSW01_02815 0.40 -0.2
560,444 + CSW01_02815 0.40 -0.6
560,444 + CSW01_02815 0.40 -0.5
560,444 + CSW01_02815 0.40 -0.3
560,444 + CSW01_02815 0.40 -0.4
560,452 - CSW01_02815 0.41 -0.3
560,452 - CSW01_02815 0.41 -0.0
560,452 - CSW01_02815 0.41 +0.2
560,452 - CSW01_02815 0.41 -0.0
560,452 - CSW01_02815 0.41 -0.0
560,452 - CSW01_02815 0.41 +0.6
560,452 - CSW01_02815 0.41 +0.1
560,452 - CSW01_02815 0.41 +1.1
560,452 - CSW01_02815 0.41 -0.0
560,452 - CSW01_02815 0.41 -0.1
560,452 - CSW01_02815 0.41 -0.5
560,454 - CSW01_02815 0.41 +0.0

Or see this region's nucleotide sequence