Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02620

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02615 and CSW01_02620 are separated by 384 nucleotidesCSW01_02620 and CSW01_02625 are separated by 61 nucleotidesCSW01_02625 and CSW01_02630 are separated by 53 nucleotides CSW01_02615: CSW01_02615 - MarR family transcriptional regulator, at 525,785 to 526,660 _02615 CSW01_02620: CSW01_02620 - inovirus Gp2 family protein, at 527,045 to 527,689 _02620 CSW01_02625: CSW01_02625 - inovirus Gp2 family protein, at 527,751 to 528,425 _02625 CSW01_02630: CSW01_02630 - inovirus Gp2 family protein, at 528,479 to 529,078 _02630 Position (kb) 527 528Strain fitness (log2 ratio) -2 -1 0 1 2at 526.114 kb on - strand, within CSW01_02615at 526.157 kb on + strand, within CSW01_02615at 526.164 kb on - strand, within CSW01_02615at 526.170 kb on - strand, within CSW01_02615at 526.244 kb on - strand, within CSW01_02615at 526.392 kb on + strand, within CSW01_02615at 526.400 kb on - strand, within CSW01_02615at 526.417 kb on - strand, within CSW01_02615at 526.428 kb on - strand, within CSW01_02615at 526.456 kb on + strand, within CSW01_02615at 526.622 kb on - strandat 526.629 kb on + strandat 526.634 kb on + strandat 526.637 kb on - strandat 526.831 kb on + strandat 526.969 kb on + strandat 527.038 kb on - strandat 527.139 kb on + strand, within CSW01_02620at 527.147 kb on - strand, within CSW01_02620at 527.147 kb on - strand, within CSW01_02620at 527.148 kb on - strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.163 kb on + strand, within CSW01_02620at 527.171 kb on - strand, within CSW01_02620at 527.201 kb on + strand, within CSW01_02620at 527.201 kb on + strand, within CSW01_02620at 527.201 kb on + strand, within CSW01_02620at 527.209 kb on + strand, within CSW01_02620at 527.209 kb on - strand, within CSW01_02620at 527.209 kb on - strand, within CSW01_02620at 527.229 kb on - strand, within CSW01_02620at 527.238 kb on - strand, within CSW01_02620at 527.297 kb on + strand, within CSW01_02620at 527.325 kb on + strand, within CSW01_02620at 527.330 kb on - strand, within CSW01_02620at 527.435 kb on - strand, within CSW01_02620at 527.435 kb on - strand, within CSW01_02620at 527.435 kb on - strand, within CSW01_02620at 527.480 kb on + strand, within CSW01_02620at 527.503 kb on - strand, within CSW01_02620at 527.511 kb on - strand, within CSW01_02620at 527.513 kb on + strand, within CSW01_02620at 527.571 kb on + strand, within CSW01_02620at 527.571 kb on + strand, within CSW01_02620at 527.571 kb on + strand, within CSW01_02620at 527.579 kb on - strand, within CSW01_02620at 527.579 kb on - strand, within CSW01_02620at 527.588 kb on - strand, within CSW01_02620at 527.593 kb on + strand, within CSW01_02620at 527.601 kb on - strand, within CSW01_02620at 527.601 kb on - strand, within CSW01_02620at 527.617 kb on + strand, within CSW01_02620at 527.625 kb on - strandat 527.679 kb on + strandat 527.687 kb on - strandat 527.702 kb on + strandat 527.755 kb on - strandat 527.775 kb on - strandat 527.792 kb on - strandat 527.828 kb on + strand, within CSW01_02625at 527.831 kb on - strand, within CSW01_02625at 527.831 kb on - strand, within CSW01_02625at 527.833 kb on + strand, within CSW01_02625at 527.841 kb on - strand, within CSW01_02625at 527.848 kb on - strand, within CSW01_02625at 527.853 kb on - strand, within CSW01_02625at 527.868 kb on - strand, within CSW01_02625at 527.868 kb on - strand, within CSW01_02625at 527.880 kb on + strand, within CSW01_02625at 527.931 kb on + strand, within CSW01_02625at 527.932 kb on + strand, within CSW01_02625at 527.935 kb on - strand, within CSW01_02625at 527.940 kb on - strand, within CSW01_02625at 527.973 kb on - strand, within CSW01_02625at 528.017 kb on + strand, within CSW01_02625at 528.017 kb on + strand, within CSW01_02625at 528.090 kb on - strand, within CSW01_02625at 528.139 kb on - strand, within CSW01_02625at 528.181 kb on - strand, within CSW01_02625at 528.182 kb on - strand, within CSW01_02625at 528.231 kb on + strand, within CSW01_02625at 528.250 kb on + strand, within CSW01_02625at 528.250 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.255 kb on + strand, within CSW01_02625at 528.256 kb on - strand, within CSW01_02625at 528.258 kb on - strand, within CSW01_02625at 528.263 kb on - strand, within CSW01_02625at 528.263 kb on - strand, within CSW01_02625at 528.263 kb on - strand, within CSW01_02625at 528.263 kb on - strand, within CSW01_02625at 528.283 kb on + strand, within CSW01_02625at 528.301 kb on + strand, within CSW01_02625at 528.370 kb on - strandat 528.390 kb on + strandat 528.405 kb on - strandat 528.469 kb on + strandat 528.469 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.470 kb on + strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.478 kb on - strandat 528.481 kb on + strandat 528.489 kb on - strandat 528.492 kb on - strandat 528.504 kb on + strandat 528.512 kb on - strandat 528.541 kb on + strand, within CSW01_02630at 528.557 kb on - strand, within CSW01_02630at 528.612 kb on - strand, within CSW01_02630at 528.655 kb on + strand, within CSW01_02630at 528.677 kb on + strand, within CSW01_02630

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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526,114 - CSW01_02615 0.38 -0.1
526,157 + CSW01_02615 0.42 -0.2
526,164 - CSW01_02615 0.43 -0.2
526,170 - CSW01_02615 0.44 -0.9
526,244 - CSW01_02615 0.52 +0.2
526,392 + CSW01_02615 0.69 -0.0
526,400 - CSW01_02615 0.70 +0.0
526,417 - CSW01_02615 0.72 -0.1
526,428 - CSW01_02615 0.73 -0.4
526,456 + CSW01_02615 0.77 -0.5
526,622 - -0.3
526,629 + +0.3
526,634 + +0.2
526,637 - -0.4
526,831 + +0.0
526,969 + -0.4
527,038 - -0.0
527,139 + CSW01_02620 0.15 -0.5
527,147 - CSW01_02620 0.16 -0.8
527,147 - CSW01_02620 0.16 -0.1
527,148 - CSW01_02620 0.16 +0.0
527,163 + CSW01_02620 0.18 -0.0
527,163 + CSW01_02620 0.18 -0.7
527,163 + CSW01_02620 0.18 -0.2
527,163 + CSW01_02620 0.18 -0.2
527,163 + CSW01_02620 0.18 -0.1
527,171 - CSW01_02620 0.20 -1.4
527,201 + CSW01_02620 0.24 -0.3
527,201 + CSW01_02620 0.24 -0.6
527,201 + CSW01_02620 0.24 +1.0
527,209 + CSW01_02620 0.25 -2.4
527,209 - CSW01_02620 0.25 +0.1
527,209 - CSW01_02620 0.25 -0.0
527,229 - CSW01_02620 0.29 -0.8
527,238 - CSW01_02620 0.30 -0.3
527,297 + CSW01_02620 0.39 -0.0
527,325 + CSW01_02620 0.43 -0.2
527,330 - CSW01_02620 0.44 +0.5
527,435 - CSW01_02620 0.60 -0.7
527,435 - CSW01_02620 0.60 -0.1
527,435 - CSW01_02620 0.60 -0.0
527,480 + CSW01_02620 0.67 -0.3
527,503 - CSW01_02620 0.71 +0.6
527,511 - CSW01_02620 0.72 -0.4
527,513 + CSW01_02620 0.73 -0.4
527,571 + CSW01_02620 0.82 +0.1
527,571 + CSW01_02620 0.82 -0.1
527,571 + CSW01_02620 0.82 -0.2
527,579 - CSW01_02620 0.83 +0.1
527,579 - CSW01_02620 0.83 -1.2
527,588 - CSW01_02620 0.84 +0.6
527,593 + CSW01_02620 0.85 -0.3
527,601 - CSW01_02620 0.86 -0.0
527,601 - CSW01_02620 0.86 +0.1
527,617 + CSW01_02620 0.89 +1.4
527,625 - -1.0
527,679 + +0.8
527,687 - +0.1
527,702 + -0.4
527,755 - -0.4
527,775 - -0.1
527,792 - +0.4
527,828 + CSW01_02625 0.11 -0.4
527,831 - CSW01_02625 0.12 -1.1
527,831 - CSW01_02625 0.12 -1.7
527,833 + CSW01_02625 0.12 +0.0
527,841 - CSW01_02625 0.13 +0.1
527,848 - CSW01_02625 0.14 -0.2
527,853 - CSW01_02625 0.15 +0.0
527,868 - CSW01_02625 0.17 -0.1
527,868 - CSW01_02625 0.17 +0.8
527,880 + CSW01_02625 0.19 +0.3
527,931 + CSW01_02625 0.27 +0.1
527,932 + CSW01_02625 0.27 -0.0
527,935 - CSW01_02625 0.27 +0.1
527,940 - CSW01_02625 0.28 -0.1
527,973 - CSW01_02625 0.33 -0.7
528,017 + CSW01_02625 0.39 +0.4
528,017 + CSW01_02625 0.39 +0.9
528,090 - CSW01_02625 0.50 +0.7
528,139 - CSW01_02625 0.57 +0.0
528,181 - CSW01_02625 0.64 +0.3
528,182 - CSW01_02625 0.64 +0.8
528,231 + CSW01_02625 0.71 -0.9
528,250 + CSW01_02625 0.74 -0.4
528,250 + CSW01_02625 0.74 -0.1
528,255 + CSW01_02625 0.75 +0.1
528,255 + CSW01_02625 0.75 +0.3
528,255 + CSW01_02625 0.75 +0.1
528,255 + CSW01_02625 0.75 +0.4
528,255 + CSW01_02625 0.75 -0.2
528,255 + CSW01_02625 0.75 -0.6
528,256 - CSW01_02625 0.75 +0.6
528,258 - CSW01_02625 0.75 +2.4
528,263 - CSW01_02625 0.76 -0.6
528,263 - CSW01_02625 0.76 -0.3
528,263 - CSW01_02625 0.76 +0.3
528,263 - CSW01_02625 0.76 -0.3
528,283 + CSW01_02625 0.79 +0.2
528,301 + CSW01_02625 0.81 +0.3
528,370 - +0.2
528,390 + +0.0
528,405 - +0.4
528,469 + -0.2
528,469 + +0.8
528,470 + +0.5
528,470 + +0.7
528,470 + -0.0
528,470 + -0.1
528,470 + -0.4
528,478 - -0.2
528,478 - -1.0
528,478 - +0.2
528,478 - -0.1
528,478 - +0.5
528,478 - +0.2
528,478 - +0.6
528,478 - -0.2
528,478 - +1.0
528,478 - +0.4
528,481 + -1.8
528,489 - -0.2
528,492 - +1.3
528,504 + -0.4
528,512 - +0.4
528,541 + CSW01_02630 0.10 +0.0
528,557 - CSW01_02630 0.13 +0.3
528,612 - CSW01_02630 0.22 +0.5
528,655 + CSW01_02630 0.29 +0.5
528,677 + CSW01_02630 0.33 +0.0

Or see this region's nucleotide sequence