Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01485

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01480 and CSW01_01485 are separated by 76 nucleotidesCSW01_01485 and CSW01_01490 are separated by 138 nucleotidesCSW01_01490 and CSW01_01495 are separated by 23 nucleotides CSW01_01480: CSW01_01480 - phosphogluconate dehydratase, at 295,619 to 297,415 _01480 CSW01_01485: CSW01_01485 - transcriptional regulator, at 297,492 to 298,490 _01485 CSW01_01490: CSW01_01490 - Fis family transcriptional regulator, at 298,629 to 298,925 _01490 CSW01_01495: CSW01_01495 - tRNA dihydrouridine synthase DusB, at 298,949 to 299,944 _01495 Position (kb) 297 298 299Strain fitness (log2 ratio) -2 -1 0 1at 296.506 kb on + strand, within CSW01_01480at 296.509 kb on - strand, within CSW01_01480at 296.520 kb on + strand, within CSW01_01480at 296.524 kb on + strand, within CSW01_01480at 296.534 kb on + strand, within CSW01_01480at 296.534 kb on + strand, within CSW01_01480at 296.534 kb on + strand, within CSW01_01480at 296.542 kb on - strand, within CSW01_01480at 296.542 kb on - strand, within CSW01_01480at 296.589 kb on + strand, within CSW01_01480at 296.589 kb on + strand, within CSW01_01480at 296.597 kb on - strand, within CSW01_01480at 296.626 kb on + strand, within CSW01_01480at 296.633 kb on - strand, within CSW01_01480at 296.640 kb on + strand, within CSW01_01480at 296.643 kb on - strand, within CSW01_01480at 296.648 kb on + strand, within CSW01_01480at 296.667 kb on - strand, within CSW01_01480at 296.669 kb on - strand, within CSW01_01480at 296.684 kb on + strand, within CSW01_01480at 296.706 kb on + strand, within CSW01_01480at 296.729 kb on - strand, within CSW01_01480at 296.749 kb on + strand, within CSW01_01480at 296.757 kb on - strand, within CSW01_01480at 296.757 kb on - strand, within CSW01_01480at 296.757 kb on - strand, within CSW01_01480at 296.796 kb on + strand, within CSW01_01480at 296.796 kb on + strand, within CSW01_01480at 296.796 kb on + strand, within CSW01_01480at 296.804 kb on - strand, within CSW01_01480at 296.806 kb on + strand, within CSW01_01480at 296.985 kb on - strand, within CSW01_01480at 296.991 kb on + strand, within CSW01_01480at 296.999 kb on - strand, within CSW01_01480at 297.013 kb on + strand, within CSW01_01480at 297.032 kb on - strand, within CSW01_01480at 297.032 kb on - strand, within CSW01_01480at 297.043 kb on + strand, within CSW01_01480at 297.066 kb on + strand, within CSW01_01480at 297.066 kb on + strand, within CSW01_01480at 297.076 kb on + strand, within CSW01_01480at 297.084 kb on - strand, within CSW01_01480at 297.092 kb on + strand, within CSW01_01480at 297.118 kb on + strand, within CSW01_01480at 297.141 kb on - strand, within CSW01_01480at 297.141 kb on - strand, within CSW01_01480at 297.141 kb on - strand, within CSW01_01480at 297.221 kb on + strand, within CSW01_01480at 297.253 kb on + strandat 297.280 kb on - strandat 297.280 kb on - strandat 297.280 kb on - strandat 297.280 kb on - strandat 297.340 kb on - strandat 297.363 kb on - strandat 297.410 kb on - strandat 297.418 kb on - strandat 297.433 kb on + strandat 297.466 kb on + strandat 297.473 kb on + strandat 297.474 kb on - strandat 297.478 kb on + strandat 297.481 kb on + strandat 297.483 kb on + strandat 297.483 kb on + strandat 297.484 kb on + strandat 297.488 kb on + strandat 297.489 kb on + strandat 297.491 kb on + strandat 297.491 kb on - strandat 297.497 kb on - strandat 297.509 kb on - strandat 297.556 kb on + strandat 297.681 kb on + strand, within CSW01_01485at 297.689 kb on - strand, within CSW01_01485at 297.764 kb on - strand, within CSW01_01485at 297.764 kb on - strand, within CSW01_01485at 297.765 kb on + strand, within CSW01_01485at 297.811 kb on - strand, within CSW01_01485at 297.828 kb on - strand, within CSW01_01485at 297.860 kb on + strand, within CSW01_01485at 297.860 kb on + strand, within CSW01_01485at 297.910 kb on - strand, within CSW01_01485at 297.920 kb on + strand, within CSW01_01485at 298.037 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.061 kb on + strand, within CSW01_01485at 298.069 kb on - strand, within CSW01_01485at 298.069 kb on - strand, within CSW01_01485at 298.069 kb on - strand, within CSW01_01485at 298.115 kb on + strand, within CSW01_01485at 298.115 kb on + strand, within CSW01_01485at 298.123 kb on - strand, within CSW01_01485at 298.123 kb on - strand, within CSW01_01485at 298.123 kb on - strand, within CSW01_01485at 298.130 kb on + strand, within CSW01_01485at 298.224 kb on - strand, within CSW01_01485at 298.229 kb on + strand, within CSW01_01485at 298.237 kb on - strand, within CSW01_01485at 298.237 kb on - strand, within CSW01_01485at 298.353 kb on - strand, within CSW01_01485at 298.377 kb on - strand, within CSW01_01485at 298.405 kb on - strandat 298.550 kb on - strandat 298.551 kb on - strandat 298.553 kb on + strandat 298.563 kb on - strandat 298.635 kb on - strandat 298.664 kb on + strand, within CSW01_01490at 298.683 kb on + strand, within CSW01_01490at 298.727 kb on - strand, within CSW01_01490at 298.732 kb on - strand, within CSW01_01490at 298.795 kb on - strand, within CSW01_01490at 298.845 kb on - strand, within CSW01_01490at 298.931 kb on + strandat 298.934 kb on - strandat 298.939 kb on - strandat 298.939 kb on - strandat 299.092 kb on + strand, within CSW01_01495at 299.100 kb on - strand, within CSW01_01495at 299.106 kb on + strand, within CSW01_01495at 299.114 kb on - strand, within CSW01_01495at 299.114 kb on - strand, within CSW01_01495at 299.147 kb on + strand, within CSW01_01495at 299.155 kb on - strand, within CSW01_01495at 299.181 kb on + strand, within CSW01_01495at 299.183 kb on + strand, within CSW01_01495at 299.209 kb on - strand, within CSW01_01495at 299.231 kb on + strand, within CSW01_01495at 299.239 kb on - strand, within CSW01_01495at 299.276 kb on + strand, within CSW01_01495at 299.286 kb on - strand, within CSW01_01495at 299.310 kb on + strand, within CSW01_01495at 299.336 kb on + strand, within CSW01_01495at 299.344 kb on - strand, within CSW01_01495at 299.356 kb on + strand, within CSW01_01495at 299.364 kb on - strand, within CSW01_01495at 299.364 kb on - strand, within CSW01_01495at 299.366 kb on + strand, within CSW01_01495at 299.374 kb on - strand, within CSW01_01495at 299.374 kb on - strand, within CSW01_01495at 299.382 kb on + strand, within CSW01_01495at 299.390 kb on - strand, within CSW01_01495at 299.404 kb on - strand, within CSW01_01495at 299.438 kb on + strand, within CSW01_01495at 299.438 kb on + strand, within CSW01_01495at 299.446 kb on - strand, within CSW01_01495

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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296,506 + CSW01_01480 0.49 -0.3
296,509 - CSW01_01480 0.50 -0.3
296,520 + CSW01_01480 0.50 -0.4
296,524 + CSW01_01480 0.50 +0.7
296,534 + CSW01_01480 0.51 +0.2
296,534 + CSW01_01480 0.51 +0.3
296,534 + CSW01_01480 0.51 -0.4
296,542 - CSW01_01480 0.51 +0.5
296,542 - CSW01_01480 0.51 +0.3
296,589 + CSW01_01480 0.54 -0.6
296,589 + CSW01_01480 0.54 -0.5
296,597 - CSW01_01480 0.54 +0.4
296,626 + CSW01_01480 0.56 -0.3
296,633 - CSW01_01480 0.56 +0.1
296,640 + CSW01_01480 0.57 -0.0
296,643 - CSW01_01480 0.57 +0.2
296,648 + CSW01_01480 0.57 -0.4
296,667 - CSW01_01480 0.58 -0.1
296,669 - CSW01_01480 0.58 +0.6
296,684 + CSW01_01480 0.59 +0.2
296,706 + CSW01_01480 0.60 -0.1
296,729 - CSW01_01480 0.62 +0.1
296,749 + CSW01_01480 0.63 +0.0
296,757 - CSW01_01480 0.63 +0.3
296,757 - CSW01_01480 0.63 +0.6
296,757 - CSW01_01480 0.63 -1.4
296,796 + CSW01_01480 0.65 +0.0
296,796 + CSW01_01480 0.65 -0.2
296,796 + CSW01_01480 0.65 +0.1
296,804 - CSW01_01480 0.66 -0.4
296,806 + CSW01_01480 0.66 -0.7
296,985 - CSW01_01480 0.76 -0.4
296,991 + CSW01_01480 0.76 -1.0
296,999 - CSW01_01480 0.77 -0.2
297,013 + CSW01_01480 0.78 +1.4
297,032 - CSW01_01480 0.79 -0.6
297,032 - CSW01_01480 0.79 -0.2
297,043 + CSW01_01480 0.79 +1.1
297,066 + CSW01_01480 0.81 +0.5
297,066 + CSW01_01480 0.81 +0.9
297,076 + CSW01_01480 0.81 +0.3
297,084 - CSW01_01480 0.82 +1.0
297,092 + CSW01_01480 0.82 -0.4
297,118 + CSW01_01480 0.83 +0.4
297,141 - CSW01_01480 0.85 -0.2
297,141 - CSW01_01480 0.85 +1.1
297,141 - CSW01_01480 0.85 +0.1
297,221 + CSW01_01480 0.89 -0.2
297,253 + -0.4
297,280 - +0.2
297,280 - +0.3
297,280 - -0.8
297,280 - +0.6
297,340 - +0.2
297,363 - -1.2
297,410 - -0.3
297,418 - +0.1
297,433 + +0.2
297,466 + +1.5
297,473 + +0.6
297,474 - -1.2
297,478 + -1.8
297,481 + +1.5
297,483 + -1.0
297,483 + +0.2
297,484 + +0.2
297,488 + -0.1
297,489 + +1.0
297,491 + +1.0
297,491 - +1.1
297,497 - +0.4
297,509 - +1.0
297,556 + +0.5
297,681 + CSW01_01485 0.19 +1.5
297,689 - CSW01_01485 0.20 +0.5
297,764 - CSW01_01485 0.27 -1.1
297,764 - CSW01_01485 0.27 +1.5
297,765 + CSW01_01485 0.27 +1.5
297,811 - CSW01_01485 0.32 -1.1
297,828 - CSW01_01485 0.34 +0.5
297,860 + CSW01_01485 0.37 +0.5
297,860 + CSW01_01485 0.37 +0.5
297,910 - CSW01_01485 0.42 +1.5
297,920 + CSW01_01485 0.43 -1.5
298,037 + CSW01_01485 0.55 +1.5
298,061 + CSW01_01485 0.57 +0.5
298,061 + CSW01_01485 0.57 +0.5
298,061 + CSW01_01485 0.57 +0.5
298,061 + CSW01_01485 0.57 +1.5
298,069 - CSW01_01485 0.58 -0.5
298,069 - CSW01_01485 0.58 +0.5
298,069 - CSW01_01485 0.58 +0.5
298,115 + CSW01_01485 0.62 -1.1
298,115 + CSW01_01485 0.62 +0.5
298,123 - CSW01_01485 0.63 -0.5
298,123 - CSW01_01485 0.63 +0.5
298,123 - CSW01_01485 0.63 +0.5
298,130 + CSW01_01485 0.64 -0.5
298,224 - CSW01_01485 0.73 -0.5
298,229 + CSW01_01485 0.74 +0.5
298,237 - CSW01_01485 0.75 -1.1
298,237 - CSW01_01485 0.75 +0.5
298,353 - CSW01_01485 0.86 +0.5
298,377 - CSW01_01485 0.89 +0.5
298,405 - -1.1
298,550 - +0.2
298,551 - +0.6
298,553 + -0.1
298,563 - -0.0
298,635 - +0.7
298,664 + CSW01_01490 0.12 -1.2
298,683 + CSW01_01490 0.18 +0.5
298,727 - CSW01_01490 0.33 -1.9
298,732 - CSW01_01490 0.35 -1.3
298,795 - CSW01_01490 0.56 -0.1
298,845 - CSW01_01490 0.73 -0.4
298,931 + -1.8
298,934 - +0.5
298,939 - -0.5
298,939 - -1.9
299,092 + CSW01_01495 0.14 +0.7
299,100 - CSW01_01495 0.15 -0.4
299,106 + CSW01_01495 0.16 -0.7
299,114 - CSW01_01495 0.17 +0.3
299,114 - CSW01_01495 0.17 -0.5
299,147 + CSW01_01495 0.20 +0.1
299,155 - CSW01_01495 0.21 -0.1
299,181 + CSW01_01495 0.23 +0.5
299,183 + CSW01_01495 0.23 -1.6
299,209 - CSW01_01495 0.26 +0.5
299,231 + CSW01_01495 0.28 -0.5
299,239 - CSW01_01495 0.29 +0.1
299,276 + CSW01_01495 0.33 -0.8
299,286 - CSW01_01495 0.34 +0.3
299,310 + CSW01_01495 0.36 -0.1
299,336 + CSW01_01495 0.39 -0.5
299,344 - CSW01_01495 0.40 +0.2
299,356 + CSW01_01495 0.41 -2.2
299,364 - CSW01_01495 0.42 +0.9
299,364 - CSW01_01495 0.42 +0.9
299,366 + CSW01_01495 0.42 +0.2
299,374 - CSW01_01495 0.43 +0.1
299,374 - CSW01_01495 0.43 +0.2
299,382 + CSW01_01495 0.43 -1.5
299,390 - CSW01_01495 0.44 +0.8
299,404 - CSW01_01495 0.46 -0.7
299,438 + CSW01_01495 0.49 -2.0
299,438 + CSW01_01495 0.49 -0.5
299,446 - CSW01_01495 0.50 -0.3

Or see this region's nucleotide sequence