Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01405

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01400 and CSW01_01405 are separated by 371 nucleotidesCSW01_01405 and CSW01_01410 are separated by 0 nucleotidesCSW01_01410 and CSW01_01415 are separated by 99 nucleotides CSW01_01400: CSW01_01400 - HlyC/CorC family transporter, at 275,742 to 276,800 _01400 CSW01_01405: CSW01_01405 - DNA-binding protein HU-alpha, at 277,172 to 277,444 _01405 CSW01_01410: CSW01_01410 - DUF1481 domain-containing protein, at 277,445 to 278,179 _01410 CSW01_01415: CSW01_01415 - phosphoribosylamine--glycine ligase, at 278,279 to 279,568 _01415 Position (kb) 277 278Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 276.349 kb on - strand, within CSW01_01400at 276.368 kb on - strand, within CSW01_01400at 276.412 kb on + strand, within CSW01_01400at 276.420 kb on - strand, within CSW01_01400at 276.420 kb on - strand, within CSW01_01400at 276.432 kb on + strand, within CSW01_01400at 276.432 kb on + strand, within CSW01_01400at 276.432 kb on + strand, within CSW01_01400at 276.464 kb on + strand, within CSW01_01400at 276.492 kb on - strand, within CSW01_01400at 276.492 kb on - strand, within CSW01_01400at 276.502 kb on - strand, within CSW01_01400at 276.503 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.520 kb on + strand, within CSW01_01400at 276.523 kb on - strand, within CSW01_01400at 276.523 kb on - strand, within CSW01_01400at 276.525 kb on + strand, within CSW01_01400at 276.525 kb on + strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.528 kb on - strand, within CSW01_01400at 276.530 kb on + strand, within CSW01_01400at 276.530 kb on + strand, within CSW01_01400at 276.530 kb on + strand, within CSW01_01400at 276.533 kb on - strand, within CSW01_01400at 276.538 kb on - strand, within CSW01_01400at 276.538 kb on - strand, within CSW01_01400at 276.538 kb on - strand, within CSW01_01400at 276.538 kb on - strand, within CSW01_01400at 276.586 kb on + strand, within CSW01_01400at 276.586 kb on + strand, within CSW01_01400at 276.586 kb on + strand, within CSW01_01400at 276.586 kb on + strand, within CSW01_01400at 276.594 kb on - strand, within CSW01_01400at 276.594 kb on - strand, within CSW01_01400at 276.594 kb on - strand, within CSW01_01400at 276.594 kb on - strand, within CSW01_01400at 276.594 kb on - strand, within CSW01_01400at 276.620 kb on - strand, within CSW01_01400at 276.625 kb on - strand, within CSW01_01400at 276.647 kb on + strand, within CSW01_01400at 276.648 kb on - strand, within CSW01_01400at 276.681 kb on + strand, within CSW01_01400at 276.698 kb on + strandat 276.698 kb on + strandat 276.706 kb on - strandat 276.706 kb on - strandat 276.708 kb on + strandat 276.718 kb on + strandat 276.721 kb on - strandat 276.721 kb on - strandat 276.721 kb on - strandat 276.721 kb on - strandat 276.721 kb on - strandat 276.721 kb on - strandat 276.726 kb on - strandat 276.750 kb on + strandat 276.820 kb on - strandat 276.835 kb on - strandat 276.911 kb on - strandat 277.015 kb on + strandat 277.102 kb on - strandat 277.102 kb on - strandat 277.108 kb on - strandat 277.158 kb on - strandat 277.258 kb on + strand, within CSW01_01405at 277.264 kb on + strand, within CSW01_01405at 277.363 kb on + strand, within CSW01_01405at 277.416 kb on + strand, within CSW01_01405at 277.447 kb on + strandat 277.455 kb on - strandat 277.455 kb on - strandat 277.455 kb on - strandat 277.455 kb on - strandat 277.460 kb on - strandat 277.553 kb on - strand, within CSW01_01410at 277.558 kb on + strand, within CSW01_01410at 277.571 kb on - strand, within CSW01_01410at 277.631 kb on + strand, within CSW01_01410at 277.631 kb on + strand, within CSW01_01410at 277.631 kb on + strand, within CSW01_01410at 277.639 kb on - strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.658 kb on + strand, within CSW01_01410at 277.666 kb on - strand, within CSW01_01410at 277.710 kb on + strand, within CSW01_01410at 277.727 kb on - strand, within CSW01_01410at 277.729 kb on - strand, within CSW01_01410at 277.741 kb on + strand, within CSW01_01410at 277.754 kb on + strand, within CSW01_01410at 277.810 kb on + strand, within CSW01_01410at 277.810 kb on + strand, within CSW01_01410at 277.818 kb on - strand, within CSW01_01410at 277.820 kb on - strand, within CSW01_01410at 277.853 kb on - strand, within CSW01_01410at 277.853 kb on - strand, within CSW01_01410at 277.938 kb on + strand, within CSW01_01410at 277.938 kb on + strand, within CSW01_01410at 277.938 kb on + strand, within CSW01_01410at 277.938 kb on + strand, within CSW01_01410at 277.946 kb on - strand, within CSW01_01410at 277.946 kb on - strand, within CSW01_01410at 277.946 kb on - strand, within CSW01_01410at 277.946 kb on - strand, within CSW01_01410at 277.946 kb on - strand, within CSW01_01410at 277.948 kb on + strand, within CSW01_01410at 277.967 kb on + strand, within CSW01_01410at 277.975 kb on - strand, within CSW01_01410at 277.975 kb on - strand, within CSW01_01410at 277.982 kb on - strand, within CSW01_01410at 277.999 kb on + strand, within CSW01_01410at 278.029 kb on + strand, within CSW01_01410at 278.039 kb on + strand, within CSW01_01410at 278.047 kb on - strand, within CSW01_01410at 278.060 kb on + strand, within CSW01_01410at 278.139 kb on - strandat 278.141 kb on + strandat 278.151 kb on + strandat 278.338 kb on - strandat 278.383 kb on - strandat 278.394 kb on + strandat 278.394 kb on + strandat 278.394 kb on + strandat 278.399 kb on + strandat 278.402 kb on - strandat 278.407 kb on - strandat 278.420 kb on - strand, within CSW01_01415

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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276,349 - CSW01_01400 0.57 +1.2
276,368 - CSW01_01400 0.59 +0.3
276,412 + CSW01_01400 0.63 -0.8
276,420 - CSW01_01400 0.64 +0.0
276,420 - CSW01_01400 0.64 -1.4
276,432 + CSW01_01400 0.65 +1.2
276,432 + CSW01_01400 0.65 +0.1
276,432 + CSW01_01400 0.65 +0.1
276,464 + CSW01_01400 0.68 +1.3
276,492 - CSW01_01400 0.71 +0.0
276,492 - CSW01_01400 0.71 +0.3
276,502 - CSW01_01400 0.72 -0.1
276,503 + CSW01_01400 0.72 +0.6
276,520 + CSW01_01400 0.73 -0.6
276,520 + CSW01_01400 0.73 +0.3
276,520 + CSW01_01400 0.73 -1.1
276,520 + CSW01_01400 0.73 -1.0
276,520 + CSW01_01400 0.73 -0.6
276,520 + CSW01_01400 0.73 -0.1
276,520 + CSW01_01400 0.73 -0.4
276,520 + CSW01_01400 0.73 -0.7
276,520 + CSW01_01400 0.73 -0.9
276,520 + CSW01_01400 0.73 -0.2
276,523 - CSW01_01400 0.74 +1.2
276,523 - CSW01_01400 0.74 +0.1
276,525 + CSW01_01400 0.74 -0.5
276,525 + CSW01_01400 0.74 +0.1
276,528 - CSW01_01400 0.74 +0.0
276,528 - CSW01_01400 0.74 +0.1
276,528 - CSW01_01400 0.74 +0.4
276,528 - CSW01_01400 0.74 -0.0
276,528 - CSW01_01400 0.74 -0.3
276,528 - CSW01_01400 0.74 +0.2
276,528 - CSW01_01400 0.74 +0.2
276,528 - CSW01_01400 0.74 +0.6
276,528 - CSW01_01400 0.74 -0.2
276,528 - CSW01_01400 0.74 +1.3
276,528 - CSW01_01400 0.74 -0.5
276,528 - CSW01_01400 0.74 +0.2
276,528 - CSW01_01400 0.74 -0.6
276,530 + CSW01_01400 0.74 +0.3
276,530 + CSW01_01400 0.74 -0.4
276,530 + CSW01_01400 0.74 +1.5
276,533 - CSW01_01400 0.75 +0.2
276,538 - CSW01_01400 0.75 +0.3
276,538 - CSW01_01400 0.75 -0.0
276,538 - CSW01_01400 0.75 -0.9
276,538 - CSW01_01400 0.75 +0.0
276,586 + CSW01_01400 0.80 -1.0
276,586 + CSW01_01400 0.80 -0.6
276,586 + CSW01_01400 0.80 +0.1
276,586 + CSW01_01400 0.80 -2.3
276,594 - CSW01_01400 0.80 -0.5
276,594 - CSW01_01400 0.80 -2.1
276,594 - CSW01_01400 0.80 -0.7
276,594 - CSW01_01400 0.80 +0.3
276,594 - CSW01_01400 0.80 +1.0
276,620 - CSW01_01400 0.83 +0.1
276,625 - CSW01_01400 0.83 +1.2
276,647 + CSW01_01400 0.85 +0.4
276,648 - CSW01_01400 0.86 -0.6
276,681 + CSW01_01400 0.89 -0.1
276,698 + -0.4
276,698 + +0.1
276,706 - +0.1
276,706 - +3.8
276,708 + +0.7
276,718 + +0.1
276,721 - -0.5
276,721 - -0.4
276,721 - -0.1
276,721 - -0.7
276,721 - +0.5
276,721 - +1.0
276,726 - -0.3
276,750 + -0.3
276,820 - -0.0
276,835 - +0.1
276,911 - -0.5
277,015 + +0.5
277,102 - -0.4
277,102 - +0.4
277,108 - -0.3
277,158 - +0.4
277,258 + CSW01_01405 0.32 -0.6
277,264 + CSW01_01405 0.34 -0.2
277,363 + CSW01_01405 0.70 +1.3
277,416 + CSW01_01405 0.89 +1.1
277,447 + +0.5
277,455 - -0.5
277,455 - +0.2
277,455 - +0.0
277,455 - +0.9
277,460 - +1.0
277,553 - CSW01_01410 0.15 -0.3
277,558 + CSW01_01410 0.15 -0.4
277,571 - CSW01_01410 0.17 +0.2
277,631 + CSW01_01410 0.25 +0.1
277,631 + CSW01_01410 0.25 +0.1
277,631 + CSW01_01410 0.25 -0.4
277,639 - CSW01_01410 0.26 +0.7
277,658 + CSW01_01410 0.29 -0.9
277,658 + CSW01_01410 0.29 -0.1
277,658 + CSW01_01410 0.29 +1.1
277,658 + CSW01_01410 0.29 -0.2
277,658 + CSW01_01410 0.29 +0.1
277,666 - CSW01_01410 0.30 -0.2
277,710 + CSW01_01410 0.36 -0.7
277,727 - CSW01_01410 0.38 -0.2
277,729 - CSW01_01410 0.39 +0.1
277,741 + CSW01_01410 0.40 +0.2
277,754 + CSW01_01410 0.42 -0.0
277,810 + CSW01_01410 0.50 -0.5
277,810 + CSW01_01410 0.50 +0.2
277,818 - CSW01_01410 0.51 -0.1
277,820 - CSW01_01410 0.51 +0.8
277,853 - CSW01_01410 0.56 -0.1
277,853 - CSW01_01410 0.56 -0.6
277,938 + CSW01_01410 0.67 +0.9
277,938 + CSW01_01410 0.67 +0.8
277,938 + CSW01_01410 0.67 +0.2
277,938 + CSW01_01410 0.67 -0.5
277,946 - CSW01_01410 0.68 +0.4
277,946 - CSW01_01410 0.68 +1.6
277,946 - CSW01_01410 0.68 +0.2
277,946 - CSW01_01410 0.68 -0.7
277,946 - CSW01_01410 0.68 +0.1
277,948 + CSW01_01410 0.68 -0.6
277,967 + CSW01_01410 0.71 -1.0
277,975 - CSW01_01410 0.72 +0.5
277,975 - CSW01_01410 0.72 -0.6
277,982 - CSW01_01410 0.73 +0.3
277,999 + CSW01_01410 0.75 -0.2
278,029 + CSW01_01410 0.79 -0.1
278,039 + CSW01_01410 0.81 -1.5
278,047 - CSW01_01410 0.82 +0.0
278,060 + CSW01_01410 0.84 +0.6
278,139 - +0.5
278,141 + +0.2
278,151 + -0.2
278,338 - -0.3
278,383 - +0.7
278,394 + +0.8
278,394 + +0.1
278,394 + +2.0
278,399 + +2.3
278,402 - -0.1
278,407 - +0.6
278,420 - CSW01_01415 0.11 +0.5

Or see this region's nucleotide sequence