Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01235

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01230 and CSW01_01235 overlap by 40 nucleotidesCSW01_01235 and CSW01_01240 overlap by 4 nucleotides CSW01_01230: CSW01_01230 - 3-deoxy-D-manno-octulosonic acid transferase, at 237,290 to 238,609 _01230 CSW01_01235: CSW01_01235 - glycosyl transferase, at 238,570 to 239,358 _01235 CSW01_01240: CSW01_01240 - lipopolysaccharide biosynthesis protein, at 239,355 to 240,404 _01240 Position (kb) 238 239 240Strain fitness (log2 ratio) -2 -1 0 1at 238.592 kb on + strandat 238.652 kb on + strand, within CSW01_01235at 238.655 kb on - strand, within CSW01_01235at 238.670 kb on - strand, within CSW01_01235at 238.701 kb on - strand, within CSW01_01235at 238.717 kb on - strand, within CSW01_01235at 238.752 kb on - strand, within CSW01_01235at 238.754 kb on - strand, within CSW01_01235at 238.771 kb on - strand, within CSW01_01235at 238.794 kb on + strand, within CSW01_01235at 238.794 kb on + strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.802 kb on - strand, within CSW01_01235at 238.807 kb on - strand, within CSW01_01235at 238.812 kb on - strand, within CSW01_01235at 238.825 kb on - strand, within CSW01_01235at 238.846 kb on - strand, within CSW01_01235at 238.892 kb on - strand, within CSW01_01235at 238.962 kb on - strand, within CSW01_01235at 238.989 kb on - strand, within CSW01_01235at 239.102 kb on - strand, within CSW01_01235at 239.138 kb on - strand, within CSW01_01235at 239.148 kb on - strand, within CSW01_01235at 239.284 kb on - strandat 239.378 kb on - strandat 239.429 kb on + strandat 239.466 kb on + strand, within CSW01_01240at 239.473 kb on + strand, within CSW01_01240at 239.474 kb on - strand, within CSW01_01240at 239.474 kb on - strand, within CSW01_01240at 239.621 kb on - strand, within CSW01_01240at 239.658 kb on + strand, within CSW01_01240at 239.693 kb on + strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.961 kb on + strand, within CSW01_01240at 239.969 kb on - strand, within CSW01_01240at 239.979 kb on + strand, within CSW01_01240at 239.985 kb on - strand, within CSW01_01240at 239.987 kb on - strand, within CSW01_01240at 240.093 kb on + strand, within CSW01_01240at 240.101 kb on - strand, within CSW01_01240at 240.101 kb on - strand, within CSW01_01240at 240.126 kb on - strand, within CSW01_01240at 240.173 kb on + strand, within CSW01_01240at 240.173 kb on + strand, within CSW01_01240at 240.181 kb on - strand, within CSW01_01240at 240.181 kb on - strand, within CSW01_01240at 240.181 kb on - strand, within CSW01_01240at 240.192 kb on - strand, within CSW01_01240at 240.289 kb on + strand, within CSW01_01240

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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238,592 + -0.3
238,652 + CSW01_01235 0.10 +1.5
238,655 - CSW01_01235 0.11 -0.2
238,670 - CSW01_01235 0.13 +0.5
238,701 - CSW01_01235 0.17 +0.9
238,717 - CSW01_01235 0.19 -1.2
238,752 - CSW01_01235 0.23 +0.4
238,754 - CSW01_01235 0.23 +0.2
238,771 - CSW01_01235 0.25 -0.2
238,794 + CSW01_01235 0.28 -0.3
238,794 + CSW01_01235 0.28 -0.3
238,802 - CSW01_01235 0.29 -0.8
238,802 - CSW01_01235 0.29 +0.3
238,802 - CSW01_01235 0.29 -0.5
238,802 - CSW01_01235 0.29 +0.5
238,802 - CSW01_01235 0.29 +0.3
238,807 - CSW01_01235 0.30 -0.8
238,812 - CSW01_01235 0.31 +0.5
238,825 - CSW01_01235 0.32 +0.0
238,846 - CSW01_01235 0.35 -0.4
238,892 - CSW01_01235 0.41 -0.2
238,962 - CSW01_01235 0.50 -0.4
238,989 - CSW01_01235 0.53 +0.1
239,102 - CSW01_01235 0.67 +0.3
239,138 - CSW01_01235 0.72 -1.1
239,148 - CSW01_01235 0.73 -1.2
239,284 - +1.5
239,378 - -0.3
239,429 + -1.5
239,466 + CSW01_01240 0.11 -0.1
239,473 + CSW01_01240 0.11 -0.4
239,474 - CSW01_01240 0.11 -0.1
239,474 - CSW01_01240 0.11 +0.7
239,621 - CSW01_01240 0.25 -0.0
239,658 + CSW01_01240 0.29 +0.2
239,693 + CSW01_01240 0.32 -0.5
239,800 - CSW01_01240 0.42 +0.1
239,800 - CSW01_01240 0.42 -1.8
239,800 - CSW01_01240 0.42 -1.1
239,800 - CSW01_01240 0.42 +0.2
239,800 - CSW01_01240 0.42 -0.4
239,961 + CSW01_01240 0.58 -0.2
239,969 - CSW01_01240 0.58 -0.4
239,979 + CSW01_01240 0.59 -1.8
239,985 - CSW01_01240 0.60 +0.2
239,987 - CSW01_01240 0.60 +0.8
240,093 + CSW01_01240 0.70 -0.5
240,101 - CSW01_01240 0.71 +0.8
240,101 - CSW01_01240 0.71 +0.2
240,126 - CSW01_01240 0.73 +0.2
240,173 + CSW01_01240 0.78 -0.1
240,173 + CSW01_01240 0.78 -0.4
240,181 - CSW01_01240 0.79 +0.5
240,181 - CSW01_01240 0.79 -0.3
240,181 - CSW01_01240 0.79 -0.1
240,192 - CSW01_01240 0.80 +0.7
240,289 + CSW01_01240 0.89 -2.1

Or see this region's nucleotide sequence