Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00765

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00760 and CSW01_00765 are separated by 201 nucleotidesCSW01_00765 and CSW01_00770 are separated by 12 nucleotidesCSW01_00770 and CSW01_00775 are separated by 55 nucleotidesCSW01_00775 and CSW01_00780 are separated by 39 nucleotides CSW01_00760: CSW01_00760 - RNA polymerase sigma factor RpoH, at 140,005 to 140,865 _00760 CSW01_00765: CSW01_00765 - Si-specific NAD(P)(+) transhydrogenase, at 141,067 to 142,467 _00765 CSW01_00770: CSW01_00770 - hypothetical protein, at 142,480 to 142,719 _00770 CSW01_00775: CSW01_00775 - HTH-type transcriptional repressor FabR, at 142,775 to 143,416 _00775 CSW01_00780: CSW01_00780 - hypothetical protein, at 143,456 to 143,827 _00780 Position (kb) 141 142 143Strain fitness (log2 ratio) -2 -1 0 1at 140.897 kb on + strandat 140.900 kb on - strandat 140.940 kb on - strandat 141.041 kb on + strandat 141.049 kb on - strandat 141.073 kb on - strandat 141.088 kb on + strandat 141.096 kb on - strandat 141.118 kb on - strandat 141.130 kb on + strandat 141.138 kb on - strandat 141.174 kb on - strandat 141.225 kb on + strand, within CSW01_00765at 141.286 kb on + strand, within CSW01_00765at 141.286 kb on + strand, within CSW01_00765at 141.316 kb on + strand, within CSW01_00765at 141.353 kb on - strand, within CSW01_00765at 141.383 kb on + strand, within CSW01_00765at 141.383 kb on + strand, within CSW01_00765at 141.390 kb on + strand, within CSW01_00765at 141.398 kb on - strand, within CSW01_00765at 141.403 kb on - strand, within CSW01_00765at 141.408 kb on - strand, within CSW01_00765at 141.425 kb on - strand, within CSW01_00765at 141.450 kb on - strand, within CSW01_00765at 141.492 kb on - strand, within CSW01_00765at 141.511 kb on + strand, within CSW01_00765at 141.516 kb on + strand, within CSW01_00765at 141.516 kb on + strand, within CSW01_00765at 141.519 kb on - strand, within CSW01_00765at 141.519 kb on - strand, within CSW01_00765at 141.524 kb on - strand, within CSW01_00765at 141.524 kb on - strand, within CSW01_00765at 141.541 kb on - strand, within CSW01_00765at 141.553 kb on - strand, within CSW01_00765at 141.553 kb on - strand, within CSW01_00765at 141.553 kb on - strand, within CSW01_00765at 141.637 kb on - strand, within CSW01_00765at 141.743 kb on - strand, within CSW01_00765at 141.771 kb on + strand, within CSW01_00765at 141.771 kb on + strand, within CSW01_00765at 141.771 kb on + strand, within CSW01_00765at 141.771 kb on + strand, within CSW01_00765at 141.771 kb on + strand, within CSW01_00765at 141.799 kb on - strand, within CSW01_00765at 141.853 kb on + strand, within CSW01_00765at 141.870 kb on + strand, within CSW01_00765at 141.885 kb on + strand, within CSW01_00765at 141.885 kb on + strand, within CSW01_00765at 141.912 kb on + strand, within CSW01_00765at 141.912 kb on + strand, within CSW01_00765at 141.912 kb on + strand, within CSW01_00765at 141.912 kb on - strand, within CSW01_00765at 141.920 kb on - strand, within CSW01_00765at 141.920 kb on - strand, within CSW01_00765at 142.019 kb on - strand, within CSW01_00765at 142.052 kb on + strand, within CSW01_00765at 142.091 kb on + strand, within CSW01_00765at 142.284 kb on + strand, within CSW01_00765at 142.297 kb on + strand, within CSW01_00765at 142.329 kb on + strandat 142.330 kb on + strandat 142.393 kb on - strandat 142.404 kb on - strandat 142.404 kb on - strandat 142.404 kb on - strandat 142.445 kb on - strandat 142.547 kb on + strand, within CSW01_00770at 142.554 kb on + strand, within CSW01_00770at 142.554 kb on + strand, within CSW01_00770at 142.554 kb on + strand, within CSW01_00770at 142.554 kb on + strand, within CSW01_00770at 142.554 kb on + strand, within CSW01_00770at 142.554 kb on + strand, within CSW01_00770at 142.554 kb on + strand, within CSW01_00770at 142.556 kb on + strand, within CSW01_00770at 142.556 kb on - strand, within CSW01_00770at 142.562 kb on - strand, within CSW01_00770at 142.572 kb on - strand, within CSW01_00770at 142.585 kb on - strand, within CSW01_00770at 142.682 kb on + strand, within CSW01_00770at 142.682 kb on + strand, within CSW01_00770at 142.682 kb on + strand, within CSW01_00770at 142.682 kb on + strand, within CSW01_00770at 142.682 kb on + strand, within CSW01_00770at 142.697 kb on + strandat 142.700 kb on + strandat 142.763 kb on + strandat 142.766 kb on - strandat 142.766 kb on - strandat 142.766 kb on - strandat 142.766 kb on - strandat 142.847 kb on - strand, within CSW01_00775at 142.852 kb on - strand, within CSW01_00775at 142.857 kb on - strand, within CSW01_00775at 142.908 kb on + strand, within CSW01_00775at 142.957 kb on + strand, within CSW01_00775at 142.965 kb on - strand, within CSW01_00775at 142.980 kb on - strand, within CSW01_00775at 143.015 kb on + strand, within CSW01_00775at 143.015 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.088 kb on + strand, within CSW01_00775at 143.088 kb on + strand, within CSW01_00775at 143.096 kb on - strand, within CSW01_00775at 143.096 kb on - strand, within CSW01_00775at 143.150 kb on + strand, within CSW01_00775at 143.165 kb on + strand, within CSW01_00775at 143.173 kb on - strand, within CSW01_00775at 143.190 kb on + strand, within CSW01_00775at 143.235 kb on - strand, within CSW01_00775at 143.255 kb on + strand, within CSW01_00775at 143.331 kb on - strand, within CSW01_00775at 143.350 kb on + strand, within CSW01_00775at 143.350 kb on + strand, within CSW01_00775at 143.350 kb on + strand, within CSW01_00775at 143.358 kb on - strandat 143.358 kb on - strandat 143.358 kb on - strandat 143.358 kb on - strandat 143.358 kb on - strandat 143.368 kb on - strandat 143.370 kb on + strandat 143.371 kb on - strandat 143.395 kb on + strandat 143.403 kb on - strandat 143.417 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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140,897 + -0.3
140,900 - +0.8
140,940 - +0.4
141,041 + -0.9
141,049 - +0.1
141,073 - -0.1
141,088 + -0.1
141,096 - -0.1
141,118 - -0.3
141,130 + +0.4
141,138 - +0.2
141,174 - -0.4
141,225 + CSW01_00765 0.11 +0.7
141,286 + CSW01_00765 0.16 +0.2
141,286 + CSW01_00765 0.16 -0.8
141,316 + CSW01_00765 0.18 +0.3
141,353 - CSW01_00765 0.20 -0.3
141,383 + CSW01_00765 0.23 +0.0
141,383 + CSW01_00765 0.23 -1.0
141,390 + CSW01_00765 0.23 +1.4
141,398 - CSW01_00765 0.24 -0.1
141,403 - CSW01_00765 0.24 +0.8
141,408 - CSW01_00765 0.24 +1.3
141,425 - CSW01_00765 0.26 +0.9
141,450 - CSW01_00765 0.27 +0.7
141,492 - CSW01_00765 0.30 +0.3
141,511 + CSW01_00765 0.32 +0.6
141,516 + CSW01_00765 0.32 +0.3
141,516 + CSW01_00765 0.32 +0.8
141,519 - CSW01_00765 0.32 -0.2
141,519 - CSW01_00765 0.32 +0.4
141,524 - CSW01_00765 0.33 +0.6
141,524 - CSW01_00765 0.33 -1.6
141,541 - CSW01_00765 0.34 +0.2
141,553 - CSW01_00765 0.35 +0.5
141,553 - CSW01_00765 0.35 +1.5
141,553 - CSW01_00765 0.35 -0.4
141,637 - CSW01_00765 0.41 -0.0
141,743 - CSW01_00765 0.48 +0.6
141,771 + CSW01_00765 0.50 +0.5
141,771 + CSW01_00765 0.50 -0.2
141,771 + CSW01_00765 0.50 +1.5
141,771 + CSW01_00765 0.50 +0.2
141,771 + CSW01_00765 0.50 -0.2
141,799 - CSW01_00765 0.52 +0.0
141,853 + CSW01_00765 0.56 +0.6
141,870 + CSW01_00765 0.57 +0.5
141,885 + CSW01_00765 0.58 -1.4
141,885 + CSW01_00765 0.58 +0.4
141,912 + CSW01_00765 0.60 +0.0
141,912 + CSW01_00765 0.60 -0.1
141,912 + CSW01_00765 0.60 +1.0
141,912 - CSW01_00765 0.60 +0.9
141,920 - CSW01_00765 0.61 +1.6
141,920 - CSW01_00765 0.61 -0.4
142,019 - CSW01_00765 0.68 +0.7
142,052 + CSW01_00765 0.70 +0.6
142,091 + CSW01_00765 0.73 +0.4
142,284 + CSW01_00765 0.87 -0.4
142,297 + CSW01_00765 0.88 -0.3
142,329 + +0.8
142,330 + -1.0
142,393 - +0.8
142,404 - +0.4
142,404 - +0.3
142,404 - -0.1
142,445 - +0.6
142,547 + CSW01_00770 0.28 +0.2
142,554 + CSW01_00770 0.31 +0.6
142,554 + CSW01_00770 0.31 -0.5
142,554 + CSW01_00770 0.31 +0.7
142,554 + CSW01_00770 0.31 +0.3
142,554 + CSW01_00770 0.31 +0.0
142,554 + CSW01_00770 0.31 +0.7
142,554 + CSW01_00770 0.31 +0.4
142,556 + CSW01_00770 0.32 +0.8
142,556 - CSW01_00770 0.32 +0.4
142,562 - CSW01_00770 0.34 +0.6
142,572 - CSW01_00770 0.38 -0.9
142,585 - CSW01_00770 0.44 +0.1
142,682 + CSW01_00770 0.84 +1.0
142,682 + CSW01_00770 0.84 -0.9
142,682 + CSW01_00770 0.84 +0.4
142,682 + CSW01_00770 0.84 +0.6
142,682 + CSW01_00770 0.84 +1.0
142,697 + +0.0
142,700 + -1.0
142,763 + -0.2
142,766 - +0.4
142,766 - +0.7
142,766 - -2.0
142,766 - +0.6
142,847 - CSW01_00775 0.11 +0.8
142,852 - CSW01_00775 0.12 +0.2
142,857 - CSW01_00775 0.13 +0.6
142,908 + CSW01_00775 0.21 -0.4
142,957 + CSW01_00775 0.28 +0.6
142,965 - CSW01_00775 0.30 +0.0
142,980 - CSW01_00775 0.32 +1.1
143,015 + CSW01_00775 0.37 -0.3
143,015 + CSW01_00775 0.37 -0.4
143,064 + CSW01_00775 0.45 -0.7
143,064 + CSW01_00775 0.45 -1.4
143,064 + CSW01_00775 0.45 +0.5
143,064 + CSW01_00775 0.45 +0.4
143,064 + CSW01_00775 0.45 +0.3
143,064 + CSW01_00775 0.45 +0.1
143,072 - CSW01_00775 0.46 +1.2
143,072 - CSW01_00775 0.46 -0.9
143,072 - CSW01_00775 0.46 -0.7
143,072 - CSW01_00775 0.46 +0.0
143,072 - CSW01_00775 0.46 -0.2
143,088 + CSW01_00775 0.49 +0.7
143,088 + CSW01_00775 0.49 +0.4
143,096 - CSW01_00775 0.50 -0.4
143,096 - CSW01_00775 0.50 +0.5
143,150 + CSW01_00775 0.58 +0.6
143,165 + CSW01_00775 0.61 +0.3
143,173 - CSW01_00775 0.62 +0.1
143,190 + CSW01_00775 0.65 -0.0
143,235 - CSW01_00775 0.72 +0.7
143,255 + CSW01_00775 0.75 +0.4
143,331 - CSW01_00775 0.87 +0.4
143,350 + CSW01_00775 0.90 +0.1
143,350 + CSW01_00775 0.90 +1.1
143,350 + CSW01_00775 0.90 -0.1
143,358 - +0.7
143,358 - +0.4
143,358 - +0.8
143,358 - +1.3
143,358 - -0.5
143,368 - +0.7
143,370 + +0.0
143,371 - +0.0
143,395 + +0.6
143,403 - +0.6
143,417 + +1.3

Or see this region's nucleotide sequence