Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00665

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00660 and CSW01_00665 are separated by 32 nucleotidesCSW01_00665 and CSW01_00670 overlap by 4 nucleotides CSW01_00660: CSW01_00660 - sensor domain-containing phosphodiesterase, at 123,773 to 126,262 _00660 CSW01_00665: CSW01_00665 - DTW domain-containing protein, at 126,295 to 126,891 _00665 CSW01_00670: CSW01_00670 - hypothetical protein, at 126,888 to 128,432 _00670 Position (kb) 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 125.298 kb on + strand, within CSW01_00660at 125.332 kb on + strand, within CSW01_00660at 125.332 kb on + strand, within CSW01_00660at 125.395 kb on - strand, within CSW01_00660at 125.397 kb on + strand, within CSW01_00660at 125.402 kb on + strand, within CSW01_00660at 125.402 kb on + strand, within CSW01_00660at 125.402 kb on + strand, within CSW01_00660at 125.402 kb on + strand, within CSW01_00660at 125.402 kb on + strand, within CSW01_00660at 125.410 kb on - strand, within CSW01_00660at 125.410 kb on - strand, within CSW01_00660at 125.410 kb on - strand, within CSW01_00660at 125.410 kb on - strand, within CSW01_00660at 125.410 kb on - strand, within CSW01_00660at 125.410 kb on - strand, within CSW01_00660at 125.445 kb on + strand, within CSW01_00660at 125.453 kb on - strand, within CSW01_00660at 125.488 kb on - strand, within CSW01_00660at 125.503 kb on + strand, within CSW01_00660at 125.511 kb on - strand, within CSW01_00660at 125.525 kb on - strand, within CSW01_00660at 125.582 kb on + strand, within CSW01_00660at 125.592 kb on - strand, within CSW01_00660at 125.638 kb on + strand, within CSW01_00660at 125.638 kb on + strand, within CSW01_00660at 125.724 kb on + strand, within CSW01_00660at 125.731 kb on + strand, within CSW01_00660at 125.739 kb on - strand, within CSW01_00660at 125.739 kb on - strand, within CSW01_00660at 125.739 kb on - strand, within CSW01_00660at 125.749 kb on - strand, within CSW01_00660at 125.763 kb on - strand, within CSW01_00660at 125.834 kb on + strand, within CSW01_00660at 125.844 kb on + strand, within CSW01_00660at 125.852 kb on - strand, within CSW01_00660at 125.874 kb on - strand, within CSW01_00660at 125.906 kb on + strand, within CSW01_00660at 125.906 kb on + strand, within CSW01_00660at 125.914 kb on + strand, within CSW01_00660at 125.914 kb on - strand, within CSW01_00660at 125.914 kb on - strand, within CSW01_00660at 125.914 kb on - strand, within CSW01_00660at 125.938 kb on - strand, within CSW01_00660at 125.953 kb on + strand, within CSW01_00660at 125.953 kb on + strand, within CSW01_00660at 125.953 kb on - strand, within CSW01_00660at 125.968 kb on - strand, within CSW01_00660at 126.036 kb on + strandat 126.036 kb on + strandat 126.044 kb on - strandat 126.095 kb on - strandat 126.198 kb on + strandat 126.202 kb on + strandat 126.262 kb on + strandat 126.267 kb on + strandat 126.270 kb on - strandat 126.361 kb on - strand, within CSW01_00665at 126.377 kb on + strand, within CSW01_00665at 126.385 kb on - strand, within CSW01_00665at 126.408 kb on + strand, within CSW01_00665at 126.409 kb on + strand, within CSW01_00665at 126.416 kb on - strand, within CSW01_00665at 126.420 kb on + strand, within CSW01_00665at 126.420 kb on + strand, within CSW01_00665at 126.420 kb on + strand, within CSW01_00665at 126.420 kb on + strand, within CSW01_00665at 126.428 kb on - strand, within CSW01_00665at 126.428 kb on - strand, within CSW01_00665at 126.428 kb on - strand, within CSW01_00665at 126.463 kb on - strand, within CSW01_00665at 126.485 kb on + strand, within CSW01_00665at 126.493 kb on - strand, within CSW01_00665at 126.515 kb on + strand, within CSW01_00665at 126.524 kb on + strand, within CSW01_00665at 126.524 kb on + strand, within CSW01_00665at 126.530 kb on - strand, within CSW01_00665at 126.546 kb on + strand, within CSW01_00665at 126.554 kb on - strand, within CSW01_00665at 126.588 kb on + strand, within CSW01_00665at 126.588 kb on + strand, within CSW01_00665at 126.616 kb on + strand, within CSW01_00665at 126.631 kb on + strand, within CSW01_00665at 126.631 kb on + strand, within CSW01_00665at 126.675 kb on - strand, within CSW01_00665at 126.681 kb on - strand, within CSW01_00665at 126.712 kb on + strand, within CSW01_00665at 126.737 kb on + strand, within CSW01_00665at 126.764 kb on + strand, within CSW01_00665at 126.793 kb on - strand, within CSW01_00665at 126.809 kb on + strand, within CSW01_00665at 126.850 kb on - strandat 126.871 kb on + strandat 126.893 kb on + strandat 126.908 kb on + strandat 126.908 kb on + strandat 126.913 kb on + strandat 126.916 kb on - strandat 126.933 kb on + strandat 126.933 kb on + strandat 126.941 kb on - strandat 126.966 kb on - strandat 126.971 kb on + strandat 126.977 kb on + strandat 126.979 kb on - strandat 126.979 kb on - strandat 127.011 kb on - strandat 127.067 kb on - strand, within CSW01_00670at 127.074 kb on + strand, within CSW01_00670at 127.082 kb on - strand, within CSW01_00670at 127.146 kb on - strand, within CSW01_00670at 127.174 kb on + strand, within CSW01_00670at 127.186 kb on + strand, within CSW01_00670at 127.289 kb on + strand, within CSW01_00670at 127.289 kb on + strand, within CSW01_00670at 127.289 kb on + strand, within CSW01_00670at 127.297 kb on - strand, within CSW01_00670at 127.297 kb on - strand, within CSW01_00670at 127.355 kb on - strand, within CSW01_00670at 127.359 kb on - strand, within CSW01_00670at 127.408 kb on - strand, within CSW01_00670at 127.425 kb on - strand, within CSW01_00670at 127.425 kb on - strand, within CSW01_00670at 127.449 kb on + strand, within CSW01_00670at 127.449 kb on + strand, within CSW01_00670at 127.457 kb on - strand, within CSW01_00670at 127.457 kb on - strand, within CSW01_00670at 127.457 kb on - strand, within CSW01_00670at 127.457 kb on - strand, within CSW01_00670at 127.457 kb on - strand, within CSW01_00670at 127.457 kb on - strand, within CSW01_00670at 127.468 kb on + strand, within CSW01_00670at 127.497 kb on + strand, within CSW01_00670at 127.505 kb on - strand, within CSW01_00670at 127.549 kb on - strand, within CSW01_00670at 127.568 kb on + strand, within CSW01_00670at 127.571 kb on - strand, within CSW01_00670at 127.573 kb on + strand, within CSW01_00670at 127.573 kb on + strand, within CSW01_00670at 127.573 kb on + strand, within CSW01_00670at 127.573 kb on + strand, within CSW01_00670at 127.573 kb on + strand, within CSW01_00670at 127.581 kb on - strand, within CSW01_00670at 127.581 kb on - strand, within CSW01_00670at 127.581 kb on - strand, within CSW01_00670at 127.587 kb on + strand, within CSW01_00670at 127.601 kb on - strand, within CSW01_00670at 127.629 kb on + strand, within CSW01_00670at 127.637 kb on - strand, within CSW01_00670at 127.641 kb on - strand, within CSW01_00670at 127.648 kb on + strand, within CSW01_00670at 127.684 kb on - strand, within CSW01_00670at 127.686 kb on + strand, within CSW01_00670at 127.722 kb on + strand, within CSW01_00670at 127.761 kb on + strand, within CSW01_00670at 127.769 kb on - strand, within CSW01_00670at 127.786 kb on - strand, within CSW01_00670at 127.790 kb on + strand, within CSW01_00670at 127.798 kb on - strand, within CSW01_00670at 127.811 kb on + strand, within CSW01_00670at 127.811 kb on + strand, within CSW01_00670at 127.811 kb on + strand, within CSW01_00670at 127.818 kb on + strand, within CSW01_00670at 127.819 kb on - strand, within CSW01_00670at 127.833 kb on + strand, within CSW01_00670at 127.833 kb on + strand, within CSW01_00670at 127.841 kb on - strand, within CSW01_00670at 127.841 kb on - strand, within CSW01_00670at 127.841 kb on - strand, within CSW01_00670at 127.841 kb on - strand, within CSW01_00670

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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125,298 + CSW01_00660 0.61 -0.2
125,332 + CSW01_00660 0.63 -0.8
125,332 + CSW01_00660 0.63 -0.1
125,395 - CSW01_00660 0.65 -0.2
125,397 + CSW01_00660 0.65 -1.0
125,402 + CSW01_00660 0.65 +0.2
125,402 + CSW01_00660 0.65 +0.2
125,402 + CSW01_00660 0.65 +0.9
125,402 + CSW01_00660 0.65 +0.3
125,402 + CSW01_00660 0.65 +0.2
125,410 - CSW01_00660 0.66 -0.3
125,410 - CSW01_00660 0.66 -0.2
125,410 - CSW01_00660 0.66 -0.0
125,410 - CSW01_00660 0.66 +0.0
125,410 - CSW01_00660 0.66 -1.1
125,410 - CSW01_00660 0.66 +0.0
125,445 + CSW01_00660 0.67 -0.0
125,453 - CSW01_00660 0.67 -0.5
125,488 - CSW01_00660 0.69 -0.3
125,503 + CSW01_00660 0.69 -0.3
125,511 - CSW01_00660 0.70 +1.2
125,525 - CSW01_00660 0.70 -0.2
125,582 + CSW01_00660 0.73 -0.4
125,592 - CSW01_00660 0.73 -0.1
125,638 + CSW01_00660 0.75 -0.8
125,638 + CSW01_00660 0.75 -0.4
125,724 + CSW01_00660 0.78 +0.4
125,731 + CSW01_00660 0.79 +0.3
125,739 - CSW01_00660 0.79 -0.7
125,739 - CSW01_00660 0.79 +0.1
125,739 - CSW01_00660 0.79 -0.3
125,749 - CSW01_00660 0.79 +0.7
125,763 - CSW01_00660 0.80 +0.4
125,834 + CSW01_00660 0.83 -1.4
125,844 + CSW01_00660 0.83 +0.2
125,852 - CSW01_00660 0.83 +0.3
125,874 - CSW01_00660 0.84 +1.6
125,906 + CSW01_00660 0.86 +0.6
125,906 + CSW01_00660 0.86 -0.2
125,914 + CSW01_00660 0.86 +0.1
125,914 - CSW01_00660 0.86 +0.4
125,914 - CSW01_00660 0.86 -0.7
125,914 - CSW01_00660 0.86 -0.8
125,938 - CSW01_00660 0.87 -0.5
125,953 + CSW01_00660 0.88 -0.1
125,953 + CSW01_00660 0.88 -0.8
125,953 - CSW01_00660 0.88 -0.2
125,968 - CSW01_00660 0.88 -0.4
126,036 + +0.7
126,036 + +0.6
126,044 - -0.4
126,095 - -0.3
126,198 + -0.1
126,202 + +0.2
126,262 + +0.1
126,267 + -1.1
126,270 - -0.1
126,361 - CSW01_00665 0.11 +0.1
126,377 + CSW01_00665 0.14 +0.3
126,385 - CSW01_00665 0.15 -0.3
126,408 + CSW01_00665 0.19 -0.4
126,409 + CSW01_00665 0.19 -0.8
126,416 - CSW01_00665 0.20 +0.5
126,420 + CSW01_00665 0.21 +0.1
126,420 + CSW01_00665 0.21 -0.4
126,420 + CSW01_00665 0.21 +0.7
126,420 + CSW01_00665 0.21 +0.1
126,428 - CSW01_00665 0.22 +0.2
126,428 - CSW01_00665 0.22 -0.1
126,428 - CSW01_00665 0.22 -0.0
126,463 - CSW01_00665 0.28 -0.1
126,485 + CSW01_00665 0.32 +1.1
126,493 - CSW01_00665 0.33 +0.2
126,515 + CSW01_00665 0.37 -0.4
126,524 + CSW01_00665 0.38 -1.0
126,524 + CSW01_00665 0.38 +0.4
126,530 - CSW01_00665 0.39 +0.6
126,546 + CSW01_00665 0.42 +0.4
126,554 - CSW01_00665 0.43 +0.5
126,588 + CSW01_00665 0.49 +0.3
126,588 + CSW01_00665 0.49 -0.2
126,616 + CSW01_00665 0.54 +0.0
126,631 + CSW01_00665 0.56 +0.2
126,631 + CSW01_00665 0.56 +0.6
126,675 - CSW01_00665 0.64 -1.1
126,681 - CSW01_00665 0.65 -0.1
126,712 + CSW01_00665 0.70 +0.7
126,737 + CSW01_00665 0.74 +0.1
126,764 + CSW01_00665 0.79 -0.2
126,793 - CSW01_00665 0.83 +0.3
126,809 + CSW01_00665 0.86 +0.2
126,850 - -0.4
126,871 + +0.7
126,893 + +0.0
126,908 + +0.0
126,908 + -0.4
126,913 + +0.6
126,916 - -1.0
126,933 + -0.3
126,933 + -0.6
126,941 - -0.4
126,966 - +0.1
126,971 + -0.0
126,977 + +0.9
126,979 - +0.6
126,979 - +0.2
127,011 - +0.2
127,067 - CSW01_00670 0.12 -0.0
127,074 + CSW01_00670 0.12 +0.5
127,082 - CSW01_00670 0.13 +2.6
127,146 - CSW01_00670 0.17 -0.5
127,174 + CSW01_00670 0.19 +0.2
127,186 + CSW01_00670 0.19 +0.7
127,289 + CSW01_00670 0.26 -0.2
127,289 + CSW01_00670 0.26 +1.0
127,289 + CSW01_00670 0.26 +0.1
127,297 - CSW01_00670 0.26 +0.0
127,297 - CSW01_00670 0.26 +1.0
127,355 - CSW01_00670 0.30 +0.6
127,359 - CSW01_00670 0.30 +0.1
127,408 - CSW01_00670 0.34 +0.0
127,425 - CSW01_00670 0.35 +1.0
127,425 - CSW01_00670 0.35 +1.0
127,449 + CSW01_00670 0.36 +1.9
127,449 + CSW01_00670 0.36 +0.7
127,457 - CSW01_00670 0.37 +0.2
127,457 - CSW01_00670 0.37 +0.9
127,457 - CSW01_00670 0.37 +0.2
127,457 - CSW01_00670 0.37 +1.3
127,457 - CSW01_00670 0.37 +0.5
127,457 - CSW01_00670 0.37 +0.1
127,468 + CSW01_00670 0.38 +0.3
127,497 + CSW01_00670 0.39 +0.2
127,505 - CSW01_00670 0.40 -0.2
127,549 - CSW01_00670 0.43 -0.5
127,568 + CSW01_00670 0.44 +0.2
127,571 - CSW01_00670 0.44 +1.6
127,573 + CSW01_00670 0.44 -2.2
127,573 + CSW01_00670 0.44 -0.1
127,573 + CSW01_00670 0.44 +0.0
127,573 + CSW01_00670 0.44 +0.4
127,573 + CSW01_00670 0.44 +0.2
127,581 - CSW01_00670 0.45 -0.4
127,581 - CSW01_00670 0.45 -0.1
127,581 - CSW01_00670 0.45 -0.0
127,587 + CSW01_00670 0.45 +1.0
127,601 - CSW01_00670 0.46 +1.0
127,629 + CSW01_00670 0.48 +0.3
127,637 - CSW01_00670 0.48 -0.6
127,641 - CSW01_00670 0.49 -0.2
127,648 + CSW01_00670 0.49 -0.0
127,684 - CSW01_00670 0.52 +0.3
127,686 + CSW01_00670 0.52 +0.1
127,722 + CSW01_00670 0.54 +0.1
127,761 + CSW01_00670 0.57 +0.8
127,769 - CSW01_00670 0.57 -0.2
127,786 - CSW01_00670 0.58 -0.1
127,790 + CSW01_00670 0.58 -0.3
127,798 - CSW01_00670 0.59 -0.1
127,811 + CSW01_00670 0.60 +1.1
127,811 + CSW01_00670 0.60 -1.8
127,811 + CSW01_00670 0.60 +0.2
127,818 + CSW01_00670 0.60 +0.3
127,819 - CSW01_00670 0.60 +2.1
127,833 + CSW01_00670 0.61 +0.3
127,833 + CSW01_00670 0.61 +0.3
127,841 - CSW01_00670 0.62 -0.1
127,841 - CSW01_00670 0.62 +0.2
127,841 - CSW01_00670 0.62 +0.3
127,841 - CSW01_00670 0.62 +0.0

Or see this region's nucleotide sequence