Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00130

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00115 and CSW01_00120 are separated by 86 nucleotidesCSW01_00120 and CSW01_00125 are separated by 120 nucleotidesCSW01_00125 and CSW01_00130 are separated by 171 nucleotidesCSW01_00130 and CSW01_00135 are separated by 247 nucleotides CSW01_00115: CSW01_00115 - hypothetical protein, at 20,943 to 21,200 _00115 CSW01_00120: CSW01_00120 - sulfurtransferase TusA, at 21,287 to 21,535 _00120 CSW01_00125: CSW01_00125 - hypothetical protein, at 21,656 to 21,856 _00125 CSW01_00130: CSW01_00130 - oxidoreductase, at 22,028 to 23,008 _00130 CSW01_00135: CSW01_00135 - threonine ammonia-lyase, biosynthetic, at 23,256 to 24,788 _00135 Position (kb) 22 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 21.035 kb on - strand, within CSW01_00115at 21.103 kb on + strand, within CSW01_00115at 21.103 kb on + strand, within CSW01_00115at 21.116 kb on - strand, within CSW01_00115at 21.156 kb on + strand, within CSW01_00115at 21.187 kb on - strandat 21.195 kb on + strandat 21.251 kb on + strandat 21.544 kb on - strandat 21.549 kb on - strandat 21.572 kb on - strandat 21.671 kb on + strandat 21.679 kb on - strand, within CSW01_00125at 21.689 kb on + strand, within CSW01_00125at 21.731 kb on + strand, within CSW01_00125at 21.746 kb on - strand, within CSW01_00125at 21.751 kb on - strand, within CSW01_00125at 21.773 kb on + strand, within CSW01_00125at 21.773 kb on + strand, within CSW01_00125at 21.773 kb on + strand, within CSW01_00125at 21.773 kb on + strand, within CSW01_00125at 21.775 kb on + strand, within CSW01_00125at 21.775 kb on + strand, within CSW01_00125at 21.780 kb on + strand, within CSW01_00125at 21.781 kb on - strand, within CSW01_00125at 21.781 kb on - strand, within CSW01_00125at 21.781 kb on - strand, within CSW01_00125at 21.781 kb on - strand, within CSW01_00125at 21.783 kb on - strand, within CSW01_00125at 21.783 kb on - strand, within CSW01_00125at 21.783 kb on - strand, within CSW01_00125at 21.783 kb on - strand, within CSW01_00125at 21.788 kb on + strand, within CSW01_00125at 21.829 kb on + strand, within CSW01_00125at 21.830 kb on - strand, within CSW01_00125at 21.837 kb on + strandat 21.850 kb on + strandat 21.852 kb on - strandat 21.858 kb on - strandat 21.885 kb on - strandat 21.885 kb on - strandat 21.972 kb on - strandat 21.980 kb on + strandat 22.118 kb on + strandat 22.120 kb on + strandat 22.126 kb on - strand, within CSW01_00130at 22.140 kb on + strand, within CSW01_00130at 22.142 kb on + strand, within CSW01_00130at 22.168 kb on + strand, within CSW01_00130at 22.178 kb on + strand, within CSW01_00130at 22.186 kb on - strand, within CSW01_00130at 22.188 kb on + strand, within CSW01_00130at 22.196 kb on - strand, within CSW01_00130at 22.196 kb on - strand, within CSW01_00130at 22.231 kb on + strand, within CSW01_00130at 22.231 kb on + strand, within CSW01_00130at 22.231 kb on + strand, within CSW01_00130at 22.231 kb on + strand, within CSW01_00130at 22.239 kb on - strand, within CSW01_00130at 22.239 kb on - strand, within CSW01_00130at 22.243 kb on + strand, within CSW01_00130at 22.304 kb on - strand, within CSW01_00130at 22.325 kb on + strand, within CSW01_00130at 22.333 kb on + strand, within CSW01_00130at 22.340 kb on + strand, within CSW01_00130at 22.365 kb on - strand, within CSW01_00130at 22.370 kb on - strand, within CSW01_00130at 22.370 kb on - strand, within CSW01_00130at 22.370 kb on - strand, within CSW01_00130at 22.384 kb on + strand, within CSW01_00130at 22.384 kb on + strand, within CSW01_00130at 22.392 kb on - strand, within CSW01_00130at 22.436 kb on - strand, within CSW01_00130at 22.447 kb on - strand, within CSW01_00130at 22.457 kb on - strand, within CSW01_00130at 22.459 kb on + strand, within CSW01_00130at 22.462 kb on - strand, within CSW01_00130at 22.487 kb on + strand, within CSW01_00130at 22.487 kb on - strand, within CSW01_00130at 22.495 kb on - strand, within CSW01_00130at 22.524 kb on + strand, within CSW01_00130at 22.529 kb on - strand, within CSW01_00130at 22.597 kb on + strand, within CSW01_00130at 22.605 kb on - strand, within CSW01_00130at 22.655 kb on + strand, within CSW01_00130at 22.655 kb on + strand, within CSW01_00130at 22.663 kb on - strand, within CSW01_00130at 22.663 kb on - strand, within CSW01_00130at 22.663 kb on - strand, within CSW01_00130at 22.663 kb on - strand, within CSW01_00130at 22.738 kb on + strand, within CSW01_00130at 22.738 kb on + strand, within CSW01_00130at 22.738 kb on + strand, within CSW01_00130at 22.746 kb on - strand, within CSW01_00130at 22.746 kb on - strand, within CSW01_00130at 22.746 kb on - strand, within CSW01_00130at 22.746 kb on - strand, within CSW01_00130at 22.748 kb on + strand, within CSW01_00130at 22.748 kb on + strand, within CSW01_00130at 22.756 kb on - strand, within CSW01_00130at 22.764 kb on + strand, within CSW01_00130at 22.793 kb on + strand, within CSW01_00130at 22.793 kb on + strand, within CSW01_00130at 22.793 kb on + strand, within CSW01_00130at 22.936 kb on + strandat 22.941 kb on + strandat 23.030 kb on - strandat 23.032 kb on - strandat 23.059 kb on + strandat 23.090 kb on + strandat 23.090 kb on + strandat 23.098 kb on - strandat 23.109 kb on - strandat 23.111 kb on - strandat 23.114 kb on - strandat 23.122 kb on + strandat 23.204 kb on + strandat 23.205 kb on - strandat 23.348 kb on + strandat 23.348 kb on + strandat 23.353 kb on + strandat 23.356 kb on - strandat 23.363 kb on + strandat 23.368 kb on + strandat 23.381 kb on - strandat 23.385 kb on + strandat 23.385 kb on + strandat 23.393 kb on - strandat 23.393 kb on - strandat 23.393 kb on - strandat 23.393 kb on - strandat 23.393 kb on - strandat 23.393 kb on - strandat 23.393 kb on - strandat 23.393 kb on - strandat 23.393 kb on - strandat 23.398 kb on - strandat 23.410 kb on - strand, within CSW01_00135at 23.445 kb on - strand, within CSW01_00135at 23.463 kb on - strand, within CSW01_00135at 23.486 kb on + strand, within CSW01_00135at 23.486 kb on + strand, within CSW01_00135at 23.486 kb on + strand, within CSW01_00135at 23.494 kb on - strand, within CSW01_00135at 23.494 kb on - strand, within CSW01_00135at 23.496 kb on + strand, within CSW01_00135at 23.524 kb on - strand, within CSW01_00135at 23.530 kb on + strand, within CSW01_00135at 23.641 kb on - strand, within CSW01_00135at 23.641 kb on - strand, within CSW01_00135at 23.708 kb on - strand, within CSW01_00135at 23.755 kb on + strand, within CSW01_00135at 23.781 kb on + strand, within CSW01_00135at 23.815 kb on - strand, within CSW01_00135at 23.815 kb on - strand, within CSW01_00135at 23.884 kb on + strand, within CSW01_00135at 23.892 kb on + strand, within CSW01_00135at 23.943 kb on + strand, within CSW01_00135at 23.953 kb on - strand, within CSW01_00135at 23.996 kb on + strand, within CSW01_00135at 24.004 kb on - strand, within CSW01_00135

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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21,035 - CSW01_00115 0.36 +0.2
21,103 + CSW01_00115 0.62 +0.8
21,103 + CSW01_00115 0.62 -1.8
21,116 - CSW01_00115 0.67 +0.2
21,156 + CSW01_00115 0.83 -0.1
21,187 - -0.7
21,195 + -0.5
21,251 + +0.4
21,544 - +0.2
21,549 - +0.0
21,572 - +0.2
21,671 + -0.1
21,679 - CSW01_00125 0.11 +0.0
21,689 + CSW01_00125 0.16 +1.6
21,731 + CSW01_00125 0.37 -0.2
21,746 - CSW01_00125 0.45 +0.1
21,751 - CSW01_00125 0.47 +0.4
21,773 + CSW01_00125 0.58 -0.5
21,773 + CSW01_00125 0.58 +1.0
21,773 + CSW01_00125 0.58 -0.3
21,773 + CSW01_00125 0.58 -0.6
21,775 + CSW01_00125 0.59 +2.9
21,775 + CSW01_00125 0.59 -0.0
21,780 + CSW01_00125 0.62 +0.8
21,781 - CSW01_00125 0.62 -0.3
21,781 - CSW01_00125 0.62 +0.1
21,781 - CSW01_00125 0.62 -0.6
21,781 - CSW01_00125 0.62 -1.2
21,783 - CSW01_00125 0.63 -0.0
21,783 - CSW01_00125 0.63 +0.5
21,783 - CSW01_00125 0.63 -0.1
21,783 - CSW01_00125 0.63 +0.5
21,788 + CSW01_00125 0.66 +0.9
21,829 + CSW01_00125 0.86 +0.1
21,830 - CSW01_00125 0.87 -0.3
21,837 + +0.1
21,850 + -0.3
21,852 - -0.4
21,858 - -0.0
21,885 - -0.3
21,885 - +0.1
21,972 - +0.5
21,980 + +1.6
22,118 + +0.4
22,120 + +0.0
22,126 - CSW01_00130 0.10 -0.4
22,140 + CSW01_00130 0.11 +0.1
22,142 + CSW01_00130 0.12 -0.6
22,168 + CSW01_00130 0.14 -1.8
22,178 + CSW01_00130 0.15 -0.6
22,186 - CSW01_00130 0.16 +0.2
22,188 + CSW01_00130 0.16 -0.8
22,196 - CSW01_00130 0.17 -0.2
22,196 - CSW01_00130 0.17 -0.1
22,231 + CSW01_00130 0.21 -0.1
22,231 + CSW01_00130 0.21 -0.1
22,231 + CSW01_00130 0.21 -0.2
22,231 + CSW01_00130 0.21 +0.0
22,239 - CSW01_00130 0.22 -3.2
22,239 - CSW01_00130 0.22 +0.1
22,243 + CSW01_00130 0.22 -0.9
22,304 - CSW01_00130 0.28 +0.7
22,325 + CSW01_00130 0.30 +0.6
22,333 + CSW01_00130 0.31 -0.2
22,340 + CSW01_00130 0.32 -0.4
22,365 - CSW01_00130 0.34 +0.6
22,370 - CSW01_00130 0.35 +0.6
22,370 - CSW01_00130 0.35 +0.4
22,370 - CSW01_00130 0.35 -0.0
22,384 + CSW01_00130 0.36 +0.2
22,384 + CSW01_00130 0.36 -0.9
22,392 - CSW01_00130 0.37 -0.5
22,436 - CSW01_00130 0.42 +0.4
22,447 - CSW01_00130 0.43 -0.6
22,457 - CSW01_00130 0.44 +0.3
22,459 + CSW01_00130 0.44 -0.6
22,462 - CSW01_00130 0.44 -0.0
22,487 + CSW01_00130 0.47 -0.7
22,487 - CSW01_00130 0.47 +0.0
22,495 - CSW01_00130 0.48 -0.1
22,524 + CSW01_00130 0.51 +0.1
22,529 - CSW01_00130 0.51 -0.2
22,597 + CSW01_00130 0.58 +0.6
22,605 - CSW01_00130 0.59 -0.0
22,655 + CSW01_00130 0.64 +0.7
22,655 + CSW01_00130 0.64 +0.0
22,663 - CSW01_00130 0.65 +0.5
22,663 - CSW01_00130 0.65 -0.3
22,663 - CSW01_00130 0.65 +0.6
22,663 - CSW01_00130 0.65 +0.1
22,738 + CSW01_00130 0.72 -0.1
22,738 + CSW01_00130 0.72 +0.1
22,738 + CSW01_00130 0.72 +0.6
22,746 - CSW01_00130 0.73 -1.3
22,746 - CSW01_00130 0.73 -0.5
22,746 - CSW01_00130 0.73 -1.0
22,746 - CSW01_00130 0.73 -0.0
22,748 + CSW01_00130 0.73 +0.7
22,748 + CSW01_00130 0.73 +0.1
22,756 - CSW01_00130 0.74 +0.7
22,764 + CSW01_00130 0.75 -0.2
22,793 + CSW01_00130 0.78 +0.0
22,793 + CSW01_00130 0.78 -0.4
22,793 + CSW01_00130 0.78 +0.3
22,936 + -1.1
22,941 + +0.5
23,030 - +0.2
23,032 - -0.3
23,059 + +0.1
23,090 + +0.1
23,090 + +0.5
23,098 - +0.2
23,109 - -0.8
23,111 - +0.4
23,114 - +0.7
23,122 + -0.6
23,204 + +1.0
23,205 - +0.3
23,348 + -0.2
23,348 + +0.6
23,353 + -1.2
23,356 - -0.1
23,363 + +1.4
23,368 + +2.1
23,381 - -0.2
23,385 + -0.1
23,385 + +0.0
23,393 - +0.1
23,393 - +0.2
23,393 - +1.0
23,393 - +0.8
23,393 - -0.1
23,393 - +1.0
23,393 - +0.9
23,393 - +0.0
23,393 - -1.1
23,398 - +0.9
23,410 - CSW01_00135 0.10 -0.4
23,445 - CSW01_00135 0.12 -0.1
23,463 - CSW01_00135 0.14 -0.8
23,486 + CSW01_00135 0.15 +0.3
23,486 + CSW01_00135 0.15 +0.1
23,486 + CSW01_00135 0.15 -0.1
23,494 - CSW01_00135 0.16 +0.6
23,494 - CSW01_00135 0.16 +0.4
23,496 + CSW01_00135 0.16 +0.1
23,524 - CSW01_00135 0.17 -1.4
23,530 + CSW01_00135 0.18 +0.0
23,641 - CSW01_00135 0.25 +0.5
23,641 - CSW01_00135 0.25 -0.4
23,708 - CSW01_00135 0.29 +1.4
23,755 + CSW01_00135 0.33 +1.0
23,781 + CSW01_00135 0.34 +1.3
23,815 - CSW01_00135 0.36 -0.0
23,815 - CSW01_00135 0.36 -0.3
23,884 + CSW01_00135 0.41 -0.3
23,892 + CSW01_00135 0.41 +0.1
23,943 + CSW01_00135 0.45 +0.8
23,953 - CSW01_00135 0.45 +0.1
23,996 + CSW01_00135 0.48 +0.1
24,004 - CSW01_00135 0.49 +0.4

Or see this region's nucleotide sequence