Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05755

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05750 and AO356_05755 are separated by 130 nucleotidesAO356_05755 and AO356_05760 overlap by 4 nucleotidesAO356_05760 and AO356_05765 are separated by 67 nucleotides AO356_05750: AO356_05750 - phage tail protein, at 1,279,856 to 1,281,430 _05750 AO356_05755: AO356_05755 - ArsR family transcriptional regulator, at 1,281,561 to 1,281,857 _05755 AO356_05760: AO356_05760 - phage tail protein, at 1,281,854 to 1,282,201 _05760 AO356_05765: AO356_05765 - phage tail protein, at 1,282,269 to 1,283,765 _05765 Position (kb) 1281 1282Strain fitness (log2 ratio) -1 0 1 2at 1280.996 kb on + strand, within AO356_05750at 1281.247 kb on + strand, within AO356_05750at 1281.248 kb on - strand, within AO356_05750at 1281.289 kb on + strandat 1281.290 kb on - strandat 1281.410 kb on + strandat 1281.688 kb on + strand, within AO356_05755at 1281.688 kb on + strand, within AO356_05755at 1281.743 kb on - strand, within AO356_05755at 1281.743 kb on - strand, within AO356_05755at 1281.991 kb on + strand, within AO356_05760at 1282.080 kb on + strand, within AO356_05760at 1282.081 kb on - strand, within AO356_05760at 1282.173 kb on + strandat 1282.173 kb on + strandat 1282.173 kb on + strandat 1282.174 kb on - strandat 1282.285 kb on + strandat 1282.285 kb on + strandat 1282.285 kb on + strandat 1282.286 kb on - strandat 1282.336 kb on + strandat 1282.336 kb on + strandat 1282.337 kb on - strandat 1282.337 kb on - strandat 1282.453 kb on + strand, within AO356_05765at 1282.550 kb on - strand, within AO356_05765at 1282.550 kb on - strand, within AO356_05765at 1282.550 kb on - strand, within AO356_05765at 1282.550 kb on - strand, within AO356_05765at 1282.621 kb on + strand, within AO356_05765at 1282.657 kb on + strand, within AO356_05765at 1282.657 kb on + strand, within AO356_05765at 1282.658 kb on - strand, within AO356_05765at 1282.683 kb on + strand, within AO356_05765at 1282.683 kb on + strand, within AO356_05765at 1282.683 kb on + strand, within AO356_05765at 1282.683 kb on + strand, within AO356_05765at 1282.684 kb on - strand, within AO356_05765at 1282.684 kb on - strand, within AO356_05765at 1282.687 kb on + strand, within AO356_05765at 1282.699 kb on + strand, within AO356_05765at 1282.700 kb on - strand, within AO356_05765at 1282.702 kb on + strand, within AO356_05765at 1282.720 kb on + strand, within AO356_05765at 1282.721 kb on - strand, within AO356_05765at 1282.721 kb on - strand, within AO356_05765at 1282.721 kb on - strand, within AO356_05765

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,280,996 + AO356_05750 0.72 +0.3
1,281,247 + AO356_05750 0.88 +0.4
1,281,248 - AO356_05750 0.88 -0.6
1,281,289 + +1.5
1,281,290 - +0.2
1,281,410 + +1.1
1,281,688 + AO356_05755 0.43 -0.2
1,281,688 + AO356_05755 0.43 +0.2
1,281,743 - AO356_05755 0.61 +0.7
1,281,743 - AO356_05755 0.61 +0.2
1,281,991 + AO356_05760 0.39 +0.3
1,282,080 + AO356_05760 0.65 -0.5
1,282,081 - AO356_05760 0.65 +0.3
1,282,173 + +0.2
1,282,173 + +0.3
1,282,173 + +0.0
1,282,174 - +0.4
1,282,285 + +0.1
1,282,285 + +1.0
1,282,285 + -0.7
1,282,286 - +0.8
1,282,336 + +0.3
1,282,336 + -0.6
1,282,337 - +0.4
1,282,337 - +0.5
1,282,453 + AO356_05765 0.12 +1.5
1,282,550 - AO356_05765 0.19 -0.1
1,282,550 - AO356_05765 0.19 +0.9
1,282,550 - AO356_05765 0.19 +0.6
1,282,550 - AO356_05765 0.19 +0.8
1,282,621 + AO356_05765 0.24 -0.2
1,282,657 + AO356_05765 0.26 +0.3
1,282,657 + AO356_05765 0.26 +1.8
1,282,658 - AO356_05765 0.26 +1.0
1,282,683 + AO356_05765 0.28 -0.0
1,282,683 + AO356_05765 0.28 +0.3
1,282,683 + AO356_05765 0.28 -0.1
1,282,683 + AO356_05765 0.28 +0.6
1,282,684 - AO356_05765 0.28 -0.3
1,282,684 - AO356_05765 0.28 +1.0
1,282,687 + AO356_05765 0.28 -0.4
1,282,699 + AO356_05765 0.29 -0.4
1,282,700 - AO356_05765 0.29 +0.9
1,282,702 + AO356_05765 0.29 +0.0
1,282,720 + AO356_05765 0.30 +0.2
1,282,721 - AO356_05765 0.30 +0.0
1,282,721 - AO356_05765 0.30 +0.6
1,282,721 - AO356_05765 0.30 +0.3

Or see this region's nucleotide sequence