Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2712

Experiment: m.b. Sisomicin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2711 and Dshi_2712 are separated by 60 nucleotidesDshi_2712 and Dshi_2713 are separated by 16 nucleotidesDshi_2713 and Dshi_2714 overlap by 4 nucleotides Dshi_2711: Dshi_2711 - cobalt chelatase, pCobS small subunit (RefSeq), at 2,873,040 to 2,874,023 _2711 Dshi_2712: Dshi_2712 - Phosphatidylethanolamine N-methyltransferase (RefSeq), at 2,874,084 to 2,874,764 _2712 Dshi_2713: Dshi_2713 - CDP-diacylglycerol--serineO-phosphatidyltransferase (RefSeq), at 2,874,781 to 2,875,530 _2713 Dshi_2714: Dshi_2714 - phosphatidylserine decarboxylase related protein (RefSeq), at 2,875,527 to 2,876,204 _2714 Position (kb) 2874 2875Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2874.070 kb on - strandat 2874.216 kb on + strand, within Dshi_2712at 2874.427 kb on + strand, within Dshi_2712at 2874.432 kb on + strand, within Dshi_2712at 2874.432 kb on + strand, within Dshi_2712at 2874.526 kb on + strand, within Dshi_2712at 2874.534 kb on - strand, within Dshi_2712at 2874.630 kb on + strand, within Dshi_2712at 2874.722 kb on - strandat 2874.742 kb on - strandat 2874.794 kb on - strandat 2874.836 kb on - strandat 2874.850 kb on - strandat 2875.009 kb on - strand, within Dshi_2713at 2875.044 kb on - strand, within Dshi_2713at 2875.078 kb on - strand, within Dshi_2713at 2875.157 kb on + strand, within Dshi_2713at 2875.246 kb on + strand, within Dshi_2713at 2875.363 kb on + strand, within Dshi_2713at 2875.433 kb on + strand, within Dshi_2713at 2875.435 kb on + strand, within Dshi_2713at 2875.461 kb on + strandat 2875.623 kb on - strand, within Dshi_2714

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.002 mg/ml
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2,874,070 - -0.3
2,874,216 + Dshi_2712 0.19 +0.3
2,874,427 + Dshi_2712 0.50 +0.0
2,874,432 + Dshi_2712 0.51 -1.0
2,874,432 + Dshi_2712 0.51 -0.5
2,874,526 + Dshi_2712 0.65 -0.6
2,874,534 - Dshi_2712 0.66 -1.9
2,874,630 + Dshi_2712 0.80 -1.3
2,874,722 - -0.2
2,874,742 - -1.0
2,874,794 - +0.6
2,874,836 - -0.1
2,874,850 - -3.4
2,875,009 - Dshi_2713 0.30 -1.6
2,875,044 - Dshi_2713 0.35 -2.1
2,875,078 - Dshi_2713 0.40 -3.0
2,875,157 + Dshi_2713 0.50 -2.8
2,875,246 + Dshi_2713 0.62 -3.1
2,875,363 + Dshi_2713 0.78 -4.5
2,875,433 + Dshi_2713 0.87 -0.5
2,875,435 + Dshi_2713 0.87 -1.9
2,875,461 + -2.9
2,875,623 - Dshi_2714 0.14 -2.5

Or see this region's nucleotide sequence