Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2137

Experiment: m.b. Sisomicin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2135 and Dshi_2136 are separated by 99 nucleotidesDshi_2136 and Dshi_2137 overlap by 4 nucleotidesDshi_2137 and Dshi_2138 are separated by 31 nucleotides Dshi_2135: Dshi_2135 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,265,345 to 2,266,010 _2135 Dshi_2136: Dshi_2136 - stationary-phase survival protein SurE (RefSeq), at 2,266,110 to 2,266,895 _2136 Dshi_2137: Dshi_2137 - protein-L-isoaspartate O-methyltransferase (RefSeq), at 2,266,892 to 2,267,542 _2137 Dshi_2138: Dshi_2138 - peptidase M23B (RefSeq), at 2,267,574 to 2,268,803 _2138 Position (kb) 2266 2267 2268Strain fitness (log2 ratio) -3 -2 -1 0 1at 2266.051 kb on + strandat 2266.089 kb on + strandat 2266.101 kb on + strandat 2266.106 kb on + strandat 2266.711 kb on - strand, within Dshi_2136

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.002 mg/ml
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2,266,051 + -2.9
2,266,089 + -0.4
2,266,101 + -1.4
2,266,106 + -0.5
2,266,711 - Dshi_2136 0.76 -2.6

Or see this region's nucleotide sequence