Experiment: m.b. Sisomicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1505 and Dshi_1506 are separated by 169 nucleotides Dshi_1506 and Dshi_1507 are separated by 125 nucleotides Dshi_1507 and Dshi_1508 are separated by 99 nucleotides
Dshi_1505: Dshi_1505 - hypothetical protein (RefSeq), at 1,564,953 to 1,566,149
_1505
Dshi_1506: Dshi_1506 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 1,566,319 to 1,567,473
_1506
Dshi_1507: Dshi_1507 - protein of unknown function DUF1153 (RefSeq), at 1,567,599 to 1,567,877
_1507
Dshi_1508: Dshi_1508 - two component transcriptional regulator, winged helix family (RefSeq), at 1,567,977 to 1,568,690
_1508
Position (kb)
1566
1567
1568 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1565.353 kb on - strand, within Dshi_1505 at 1565.504 kb on + strand, within Dshi_1505 at 1565.579 kb on - strand, within Dshi_1505 at 1565.863 kb on + strand, within Dshi_1505 at 1566.024 kb on - strand, within Dshi_1505 at 1566.030 kb on - strand at 1566.048 kb on - strand at 1566.094 kb on + strand at 1566.097 kb on + strand at 1566.138 kb on - strand at 1566.172 kb on - strand at 1566.265 kb on - strand at 1566.273 kb on + strand at 1567.494 kb on + strand at 1567.526 kb on + strand at 1567.526 kb on + strand at 1567.571 kb on - strand at 1567.580 kb on - strand at 1567.580 kb on - strand at 1567.594 kb on - strand at 1567.594 kb on - strand at 1567.637 kb on - strand, within Dshi_1507 at 1567.661 kb on - strand, within Dshi_1507 at 1567.671 kb on - strand, within Dshi_1507 at 1567.706 kb on + strand, within Dshi_1507 at 1567.721 kb on + strand, within Dshi_1507 at 1567.729 kb on + strand, within Dshi_1507 at 1567.729 kb on - strand, within Dshi_1507 at 1567.737 kb on - strand, within Dshi_1507 at 1567.740 kb on + strand, within Dshi_1507 at 1567.939 kb on + strand at 1567.947 kb on - strand at 1567.947 kb on - strand at 1567.969 kb on - strand at 1568.027 kb on - strand at 1568.031 kb on + strand at 1568.045 kb on - strand at 1568.062 kb on + strand, within Dshi_1508 at 1568.068 kb on - strand, within Dshi_1508 at 1568.068 kb on - strand, within Dshi_1508 at 1568.123 kb on + strand, within Dshi_1508 at 1568.136 kb on - strand, within Dshi_1508 at 1568.149 kb on - strand, within Dshi_1508 at 1568.168 kb on - strand, within Dshi_1508 at 1568.188 kb on - strand, within Dshi_1508 at 1568.275 kb on - strand, within Dshi_1508 at 1568.338 kb on - strand, within Dshi_1508 at 1568.415 kb on - strand, within Dshi_1508
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.002 mg/ml remove 1,565,353 - Dshi_1505 0.33 -0.7 1,565,504 + Dshi_1505 0.46 -0.1 1,565,579 - Dshi_1505 0.52 +1.2 1,565,863 + Dshi_1505 0.76 +0.7 1,566,024 - Dshi_1505 0.89 +0.1 1,566,030 - +0.2 1,566,048 - +0.4 1,566,094 + +0.1 1,566,097 + +0.0 1,566,138 - +1.0 1,566,172 - -0.5 1,566,265 - -0.1 1,566,273 + -0.2 1,567,494 + +0.7 1,567,526 + +0.8 1,567,526 + -0.2 1,567,571 - +0.3 1,567,580 - -0.3 1,567,580 - +0.2 1,567,594 - -0.4 1,567,594 - -0.5 1,567,637 - Dshi_1507 0.14 -1.9 1,567,661 - Dshi_1507 0.22 +0.2 1,567,671 - Dshi_1507 0.26 -0.1 1,567,706 + Dshi_1507 0.38 +0.9 1,567,721 + Dshi_1507 0.44 -0.3 1,567,729 + Dshi_1507 0.47 -0.2 1,567,729 - Dshi_1507 0.47 -0.2 1,567,737 - Dshi_1507 0.49 +0.5 1,567,740 + Dshi_1507 0.51 -0.1 1,567,939 + +0.6 1,567,947 - +2.4 1,567,947 - -0.1 1,567,969 - +0.1 1,568,027 - +1.0 1,568,031 + +0.7 1,568,045 - +1.1 1,568,062 + Dshi_1508 0.12 +0.3 1,568,068 - Dshi_1508 0.13 +0.9 1,568,068 - Dshi_1508 0.13 +1.7 1,568,123 + Dshi_1508 0.20 +0.6 1,568,136 - Dshi_1508 0.22 +1.0 1,568,149 - Dshi_1508 0.24 +0.8 1,568,168 - Dshi_1508 0.27 +0.9 1,568,188 - Dshi_1508 0.30 +0.6 1,568,275 - Dshi_1508 0.42 +0.7 1,568,338 - Dshi_1508 0.51 +0.3 1,568,415 - Dshi_1508 0.61 +0.7
Or see this region's nucleotide sequence