Experiment: m.b. Sisomicin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0576 and Dshi_0577 are separated by 90 nucleotides Dshi_0577 and Dshi_0578 overlap by 4 nucleotides
Dshi_0576: Dshi_0576 - transcriptional regulator, LysR family (RefSeq), at 565,766 to 566,635
_0576
Dshi_0577: Dshi_0577 - aldehyde dehydrogenase (RefSeq), at 566,726 to 568,177
_0577
Dshi_0578: Dshi_0578 - peptidase M19 renal dipeptidase (RefSeq), at 568,174 to 569,184
_0578
Position (kb) 566
567
568
569 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 565.764 kb on - strand at 565.823 kb on - strand at 565.848 kb on - strand at 565.849 kb on + strand at 565.869 kb on - strand, within Dshi_0576 at 565.882 kb on - strand, within Dshi_0576 at 565.884 kb on + strand, within Dshi_0576 at 565.892 kb on - strand, within Dshi_0576 at 565.913 kb on - strand, within Dshi_0576 at 565.949 kb on + strand, within Dshi_0576 at 565.983 kb on - strand, within Dshi_0576 at 565.983 kb on - strand, within Dshi_0576 at 565.992 kb on + strand, within Dshi_0576 at 566.015 kb on - strand, within Dshi_0576 at 566.079 kb on + strand, within Dshi_0576 at 566.091 kb on + strand, within Dshi_0576 at 566.099 kb on - strand, within Dshi_0576 at 566.099 kb on - strand, within Dshi_0576 at 566.099 kb on - strand, within Dshi_0576 at 566.108 kb on + strand, within Dshi_0576 at 566.108 kb on + strand, within Dshi_0576 at 566.116 kb on - strand, within Dshi_0576 at 566.127 kb on + strand, within Dshi_0576 at 566.128 kb on - strand, within Dshi_0576 at 566.145 kb on - strand, within Dshi_0576 at 566.177 kb on + strand, within Dshi_0576 at 566.224 kb on + strand, within Dshi_0576 at 566.228 kb on - strand, within Dshi_0576 at 566.279 kb on + strand, within Dshi_0576 at 566.287 kb on - strand, within Dshi_0576 at 566.349 kb on + strand, within Dshi_0576 at 566.380 kb on - strand, within Dshi_0576 at 566.397 kb on + strand, within Dshi_0576 at 566.413 kb on + strand, within Dshi_0576 at 566.439 kb on + strand, within Dshi_0576 at 566.449 kb on + strand, within Dshi_0576 at 566.458 kb on - strand, within Dshi_0576 at 566.494 kb on - strand, within Dshi_0576 at 566.499 kb on + strand, within Dshi_0576 at 566.508 kb on + strand, within Dshi_0576 at 566.516 kb on - strand, within Dshi_0576 at 566.516 kb on - strand, within Dshi_0576 at 566.534 kb on - strand, within Dshi_0576 at 566.552 kb on + strand at 566.573 kb on + strand at 566.596 kb on + strand at 566.599 kb on + strand at 566.604 kb on - strand at 566.615 kb on - strand at 566.615 kb on - strand at 566.699 kb on - strand at 566.716 kb on + strand at 566.716 kb on + strand at 566.719 kb on - strand at 566.724 kb on - strand at 566.756 kb on - strand at 566.766 kb on - strand at 566.771 kb on - strand at 566.808 kb on + strand at 566.808 kb on + strand at 566.816 kb on - strand at 566.823 kb on - strand at 566.844 kb on - strand at 566.848 kb on - strand at 566.848 kb on - strand at 566.848 kb on - strand at 566.848 kb on - strand at 566.888 kb on - strand, within Dshi_0577 at 566.888 kb on - strand, within Dshi_0577 at 566.888 kb on - strand, within Dshi_0577 at 566.953 kb on - strand at 566.998 kb on + strand, within Dshi_0577 at 567.012 kb on - strand, within Dshi_0577 at 567.016 kb on + strand, within Dshi_0577 at 567.039 kb on - strand, within Dshi_0577 at 567.120 kb on + strand, within Dshi_0577 at 567.135 kb on + strand, within Dshi_0577 at 567.143 kb on - strand, within Dshi_0577 at 567.184 kb on + strand, within Dshi_0577 at 567.217 kb on + strand, within Dshi_0577 at 567.275 kb on + strand, within Dshi_0577 at 567.275 kb on + strand, within Dshi_0577 at 567.278 kb on - strand, within Dshi_0577 at 567.315 kb on - strand, within Dshi_0577 at 567.317 kb on - strand, within Dshi_0577 at 567.319 kb on + strand, within Dshi_0577 at 567.319 kb on + strand, within Dshi_0577 at 567.325 kb on - strand, within Dshi_0577 at 567.327 kb on - strand, within Dshi_0577 at 567.327 kb on - strand, within Dshi_0577 at 567.360 kb on + strand, within Dshi_0577 at 567.361 kb on - strand, within Dshi_0577 at 567.387 kb on + strand, within Dshi_0577 at 567.392 kb on + strand, within Dshi_0577 at 567.510 kb on + strand, within Dshi_0577 at 567.529 kb on - strand, within Dshi_0577 at 567.534 kb on - strand, within Dshi_0577 at 567.589 kb on + strand, within Dshi_0577 at 567.590 kb on + strand, within Dshi_0577 at 567.590 kb on + strand, within Dshi_0577 at 567.598 kb on - strand, within Dshi_0577 at 567.598 kb on - strand, within Dshi_0577 at 567.654 kb on - strand, within Dshi_0577 at 567.666 kb on + strand, within Dshi_0577 at 567.667 kb on - strand, within Dshi_0577 at 567.676 kb on - strand, within Dshi_0577 at 567.723 kb on + strand, within Dshi_0577 at 567.751 kb on - strand, within Dshi_0577 at 567.756 kb on - strand, within Dshi_0577 at 567.761 kb on + strand, within Dshi_0577 at 567.761 kb on + strand, within Dshi_0577 at 567.766 kb on + strand, within Dshi_0577 at 567.808 kb on + strand, within Dshi_0577 at 567.888 kb on - strand, within Dshi_0577 at 567.925 kb on - strand, within Dshi_0577 at 567.960 kb on + strand, within Dshi_0577 at 568.089 kb on + strand at 568.138 kb on + strand at 568.155 kb on - strand at 568.176 kb on - strand at 568.247 kb on + strand at 568.247 kb on + strand at 568.424 kb on + strand, within Dshi_0578 at 568.424 kb on + strand, within Dshi_0578 at 568.461 kb on + strand, within Dshi_0578 at 568.469 kb on - strand, within Dshi_0578 at 568.469 kb on - strand, within Dshi_0578 at 568.486 kb on - strand, within Dshi_0578 at 568.607 kb on + strand, within Dshi_0578 at 568.607 kb on + strand, within Dshi_0578 at 568.611 kb on + strand, within Dshi_0578 at 568.743 kb on + strand, within Dshi_0578 at 568.800 kb on + strand, within Dshi_0578 at 568.800 kb on + strand, within Dshi_0578 at 568.808 kb on - strand, within Dshi_0578 at 568.833 kb on - strand, within Dshi_0578 at 568.900 kb on - strand, within Dshi_0578 at 568.900 kb on - strand, within Dshi_0578 at 568.930 kb on + strand, within Dshi_0578 at 568.939 kb on + strand, within Dshi_0578 at 568.960 kb on - strand, within Dshi_0578 at 568.971 kb on - strand, within Dshi_0578 at 568.972 kb on + strand, within Dshi_0578 at 569.038 kb on - strand, within Dshi_0578 at 569.054 kb on - strand, within Dshi_0578 at 569.064 kb on - strand, within Dshi_0578 at 569.071 kb on + strand, within Dshi_0578
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.002 mg/ml remove 565,764 - -0.0 565,823 - +0.1 565,848 - -0.1 565,849 + +0.0 565,869 - Dshi_0576 0.12 -0.6 565,882 - Dshi_0576 0.13 +0.9 565,884 + Dshi_0576 0.14 +0.1 565,892 - Dshi_0576 0.14 -0.0 565,913 - Dshi_0576 0.17 +0.3 565,949 + Dshi_0576 0.21 +0.5 565,983 - Dshi_0576 0.25 -0.0 565,983 - Dshi_0576 0.25 +0.6 565,992 + Dshi_0576 0.26 +0.7 566,015 - Dshi_0576 0.29 -0.4 566,079 + Dshi_0576 0.36 -0.1 566,091 + Dshi_0576 0.37 +0.1 566,099 - Dshi_0576 0.38 -0.1 566,099 - Dshi_0576 0.38 +0.4 566,099 - Dshi_0576 0.38 -0.7 566,108 + Dshi_0576 0.39 +0.7 566,108 + Dshi_0576 0.39 +0.7 566,116 - Dshi_0576 0.40 -0.8 566,127 + Dshi_0576 0.41 -0.3 566,128 - Dshi_0576 0.42 -0.1 566,145 - Dshi_0576 0.44 +0.3 566,177 + Dshi_0576 0.47 +0.3 566,224 + Dshi_0576 0.53 +0.2 566,228 - Dshi_0576 0.53 -0.2 566,279 + Dshi_0576 0.59 +0.2 566,287 - Dshi_0576 0.60 +0.4 566,349 + Dshi_0576 0.67 +0.0 566,380 - Dshi_0576 0.71 -0.2 566,397 + Dshi_0576 0.73 -0.1 566,413 + Dshi_0576 0.74 -0.4 566,439 + Dshi_0576 0.77 +0.4 566,449 + Dshi_0576 0.79 +1.1 566,458 - Dshi_0576 0.80 +1.1 566,494 - Dshi_0576 0.84 +0.4 566,499 + Dshi_0576 0.84 -0.9 566,508 + Dshi_0576 0.85 -0.3 566,516 - Dshi_0576 0.86 +1.6 566,516 - Dshi_0576 0.86 +0.4 566,534 - Dshi_0576 0.88 -0.8 566,552 + +1.3 566,573 + +0.5 566,596 + -0.1 566,599 + -0.6 566,604 - -1.2 566,615 - +0.8 566,615 - +0.7 566,699 - +0.6 566,716 + -0.4 566,716 + +0.4 566,719 - +0.3 566,724 - +0.2 566,756 - +2.7 566,766 - +2.2 566,771 - -0.2 566,808 + +0.2 566,808 + -0.9 566,816 - -1.3 566,823 - -0.6 566,844 - +0.3 566,848 - -0.7 566,848 - +0.0 566,848 - +0.2 566,848 - -0.6 566,888 - Dshi_0577 0.11 +0.9 566,888 - Dshi_0577 0.11 +0.4 566,888 - Dshi_0577 0.11 +0.6 566,953 - +0.4 566,998 + Dshi_0577 0.19 -0.8 567,012 - Dshi_0577 0.20 +0.6 567,016 + Dshi_0577 0.20 +1.1 567,039 - Dshi_0577 0.22 +1.1 567,120 + Dshi_0577 0.27 -0.9 567,135 + Dshi_0577 0.28 +0.0 567,143 - Dshi_0577 0.29 +0.4 567,184 + Dshi_0577 0.32 +0.6 567,217 + Dshi_0577 0.34 +0.3 567,275 + Dshi_0577 0.38 +0.2 567,275 + Dshi_0577 0.38 +0.7 567,278 - Dshi_0577 0.38 +0.3 567,315 - Dshi_0577 0.41 -0.2 567,317 - Dshi_0577 0.41 -0.5 567,319 + Dshi_0577 0.41 +2.1 567,319 + Dshi_0577 0.41 +2.1 567,325 - Dshi_0577 0.41 +0.1 567,327 - Dshi_0577 0.41 +0.2 567,327 - Dshi_0577 0.41 +0.9 567,360 + Dshi_0577 0.44 +0.2 567,361 - Dshi_0577 0.44 +0.1 567,387 + Dshi_0577 0.46 +0.2 567,392 + Dshi_0577 0.46 +0.4 567,510 + Dshi_0577 0.54 +0.0 567,529 - Dshi_0577 0.55 +1.0 567,534 - Dshi_0577 0.56 +0.7 567,589 + Dshi_0577 0.59 +3.2 567,590 + Dshi_0577 0.60 +0.6 567,590 + Dshi_0577 0.60 -0.7 567,598 - Dshi_0577 0.60 +0.2 567,598 - Dshi_0577 0.60 -0.1 567,654 - Dshi_0577 0.64 -1.0 567,666 + Dshi_0577 0.65 +0.4 567,667 - Dshi_0577 0.65 +0.1 567,676 - Dshi_0577 0.65 -0.5 567,723 + Dshi_0577 0.69 +0.4 567,751 - Dshi_0577 0.71 +0.2 567,756 - Dshi_0577 0.71 +0.3 567,761 + Dshi_0577 0.71 -0.2 567,761 + Dshi_0577 0.71 +0.3 567,766 + Dshi_0577 0.72 -0.2 567,808 + Dshi_0577 0.75 -1.1 567,888 - Dshi_0577 0.80 +0.1 567,925 - Dshi_0577 0.83 -0.3 567,960 + Dshi_0577 0.85 -0.4 568,089 + +0.3 568,138 + +0.4 568,155 - +0.4 568,176 - -0.1 568,247 + -0.6 568,247 + -1.1 568,424 + Dshi_0578 0.25 -0.4 568,424 + Dshi_0578 0.25 +1.9 568,461 + Dshi_0578 0.28 -1.0 568,469 - Dshi_0578 0.29 +0.8 568,469 - Dshi_0578 0.29 +0.3 568,486 - Dshi_0578 0.31 -1.3 568,607 + Dshi_0578 0.43 -0.2 568,607 + Dshi_0578 0.43 -2.3 568,611 + Dshi_0578 0.43 +0.7 568,743 + Dshi_0578 0.56 +0.7 568,800 + Dshi_0578 0.62 -0.5 568,800 + Dshi_0578 0.62 +1.1 568,808 - Dshi_0578 0.63 -0.6 568,833 - Dshi_0578 0.65 -0.6 568,900 - Dshi_0578 0.72 -0.5 568,900 - Dshi_0578 0.72 +0.9 568,930 + Dshi_0578 0.75 -0.2 568,939 + Dshi_0578 0.76 +0.2 568,960 - Dshi_0578 0.78 -0.2 568,971 - Dshi_0578 0.79 +0.5 568,972 + Dshi_0578 0.79 -0.3 569,038 - Dshi_0578 0.85 +0.9 569,054 - Dshi_0578 0.87 +0.3 569,064 - Dshi_0578 0.88 -0.2 569,071 + Dshi_0578 0.89 +0.4
Or see this region's nucleotide sequence