Experiment: MoYLS4 with Nitrite 0.025mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0622 and nrfH are separated by 342 nucleotides nrfH and nrfA overlap by 8 nucleotides
DVU0622: DVU0622 - sensor histidine kinase/response regulator (TIGR), at 688,231 to 690,729
DVU0622
DVU0624: nrfH - NapC/NirT cytochrome c family protein (TIGR), at 691,072 to 691,551
nrfH
DVU0625: nrfA - cytochrome c nitrite reductase, catalytic subunit NrfA, putative (Shelley Haveman), at 691,544 to 693,118
nrfA
Position (kb) 691
692 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 690.092 kb on + strand, within DVU0622 at 690.092 kb on + strand, within DVU0622 at 690.138 kb on + strand, within DVU0622 at 690.165 kb on - strand, within DVU0622 at 690.194 kb on + strand, within DVU0622 at 690.275 kb on - strand, within DVU0622 at 690.434 kb on + strand, within DVU0622 at 690.442 kb on - strand, within DVU0622 at 690.565 kb on + strand at 690.579 kb on + strand at 690.614 kb on - strand at 690.652 kb on + strand at 690.652 kb on + strand at 690.660 kb on - strand at 690.674 kb on + strand at 690.679 kb on + strand at 690.714 kb on + strand at 690.722 kb on - strand at 690.722 kb on - strand at 690.722 kb on - strand at 690.727 kb on - strand at 690.966 kb on - strand at 691.029 kb on + strand at 691.213 kb on - strand, within nrfH at 691.221 kb on - strand, within nrfH at 691.311 kb on + strand, within nrfH at 691.337 kb on - strand, within nrfH at 691.402 kb on + strand, within nrfH at 691.415 kb on + strand, within nrfH at 691.424 kb on - strand, within nrfH at 691.424 kb on - strand, within nrfH at 691.431 kb on + strand, within nrfH at 691.465 kb on + strand, within nrfH at 691.481 kb on - strand, within nrfH at 691.498 kb on + strand, within nrfH at 691.498 kb on + strand, within nrfH at 691.503 kb on + strand, within nrfH at 691.506 kb on - strand at 691.569 kb on - strand at 691.774 kb on - strand, within nrfA at 691.779 kb on - strand, within nrfA at 691.823 kb on + strand, within nrfA at 691.855 kb on + strand, within nrfA at 691.863 kb on - strand, within nrfA at 691.908 kb on - strand, within nrfA at 691.990 kb on + strand, within nrfA at 691.990 kb on + strand, within nrfA at 692.016 kb on + strand, within nrfA at 692.018 kb on + strand, within nrfA at 692.120 kb on + strand, within nrfA at 692.120 kb on + strand, within nrfA at 692.127 kb on + strand, within nrfA at 692.127 kb on + strand, within nrfA at 692.135 kb on - strand, within nrfA at 692.135 kb on - strand, within nrfA at 692.137 kb on - strand, within nrfA at 692.187 kb on - strand, within nrfA at 692.230 kb on - strand, within nrfA at 692.246 kb on + strand, within nrfA at 692.335 kb on + strand, within nrfA at 692.402 kb on - strand, within nrfA at 692.455 kb on + strand, within nrfA at 692.515 kb on - strand, within nrfA
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrite 0.025mg/mL remove 690,092 + DVU0622 0.74 -0.0 690,092 + DVU0622 0.74 +0.1 690,138 + DVU0622 0.76 -0.2 690,165 - DVU0622 0.77 -0.4 690,194 + DVU0622 0.79 -0.3 690,275 - DVU0622 0.82 -0.3 690,434 + DVU0622 0.88 +0.1 690,442 - DVU0622 0.88 -0.7 690,565 + +0.3 690,579 + +0.3 690,614 - +1.3 690,652 + -0.9 690,652 + +0.2 690,660 - +0.0 690,674 + -0.7 690,679 + -0.3 690,714 + +0.3 690,722 - -0.3 690,722 - -0.2 690,722 - -1.4 690,727 - -1.6 690,966 - -0.0 691,029 + -0.1 691,213 - nrfH DVU0624 0.29 -3.0 691,221 - nrfH DVU0624 0.31 -4.2 691,311 + nrfH DVU0624 0.50 -4.2 691,337 - nrfH DVU0624 0.55 -3.8 691,402 + nrfH DVU0624 0.69 -5.3 691,415 + nrfH DVU0624 0.71 -0.3 691,424 - nrfH DVU0624 0.73 -4.3 691,424 - nrfH DVU0624 0.73 -4.8 691,431 + nrfH DVU0624 0.75 -4.2 691,465 + nrfH DVU0624 0.82 +0.5 691,481 - nrfH DVU0624 0.85 -3.9 691,498 + nrfH DVU0624 0.89 -2.1 691,498 + nrfH DVU0624 0.89 -0.7 691,503 + nrfH DVU0624 0.90 -1.1 691,506 - -4.3 691,569 - +1.3 691,774 - nrfA DVU0625 0.15 -3.3 691,779 - nrfA DVU0625 0.15 -2.3 691,823 + nrfA DVU0625 0.18 -1.1 691,855 + nrfA DVU0625 0.20 -3.0 691,863 - nrfA DVU0625 0.20 -2.6 691,908 - nrfA DVU0625 0.23 -3.7 691,990 + nrfA DVU0625 0.28 -2.8 691,990 + nrfA DVU0625 0.28 -1.2 692,016 + nrfA DVU0625 0.30 -3.2 692,018 + nrfA DVU0625 0.30 -3.7 692,120 + nrfA DVU0625 0.37 -4.6 692,120 + nrfA DVU0625 0.37 -4.5 692,127 + nrfA DVU0625 0.37 -2.9 692,127 + nrfA DVU0625 0.37 -2.8 692,135 - nrfA DVU0625 0.38 -3.6 692,135 - nrfA DVU0625 0.38 -2.5 692,137 - nrfA DVU0625 0.38 -5.7 692,187 - nrfA DVU0625 0.41 -2.8 692,230 - nrfA DVU0625 0.44 -2.4 692,246 + nrfA DVU0625 0.45 -3.3 692,335 + nrfA DVU0625 0.50 -3.7 692,402 - nrfA DVU0625 0.54 -1.7 692,455 + nrfA DVU0625 0.58 -4.4 692,515 - nrfA DVU0625 0.62 -2.6
Or see this region's nucleotide sequence