Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0127
Experiment: MoYLS4 with Nitrite 0.025mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Nitrite 0.025mg/mL |
---|---|---|---|---|---|
remove | |||||
161,935 | + | b3486 | DVU0126 | 0.74 | -0.5 |
162,060 | + | b3486 | DVU0126 | 0.77 | -0.5 |
162,068 | + | b3486 | DVU0126 | 0.78 | -0.2 |
162,102 | - | b3486 | DVU0126 | 0.78 | -0.2 |
162,113 | + | b3486 | DVU0126 | 0.79 | -0.8 |
162,128 | + | b3486 | DVU0126 | 0.79 | -0.3 |
162,183 | + | b3486 | DVU0126 | 0.81 | -0.5 |
162,211 | - | b3486 | DVU0126 | 0.82 | +0.2 |
162,211 | - | b3486 | DVU0126 | 0.82 | -0.4 |
162,227 | + | b3486 | DVU0126 | 0.82 | -0.5 |
162,306 | + | b3486 | DVU0126 | 0.84 | +1.2 |
162,323 | + | b3486 | DVU0126 | 0.85 | -1.1 |
162,428 | - | b3486 | DVU0126 | 0.88 | +0.3 |
162,446 | + | b3486 | DVU0126 | 0.88 | -0.8 |
162,446 | + | b3486 | DVU0126 | 0.88 | -0.3 |
162,454 | - | b3486 | DVU0126 | 0.88 | -0.4 |
162,554 | + | -0.8 | |||
162,564 | + | -0.8 | |||
162,564 | + | -0.2 | |||
162,636 | - | -0.4 | |||
162,664 | - | -0.4 | |||
162,673 | + | -0.2 | |||
162,692 | - | +0.0 | |||
162,702 | - | -0.1 | |||
162,741 | - | -1.1 | |||
162,821 | + | +0.2 | |||
162,903 | + | -0.1 | |||
162,905 | + | -0.1 | |||
162,915 | + | -0.5 | |||
162,915 | + | -0.3 | |||
162,923 | - | -0.5 | |||
162,923 | - | -0.2 | |||
162,960 | + | +1.2 | |||
163,057 | + | DVU0127 | 0.18 | +0.2 | |
163,076 | - | DVU0127 | 0.19 | -0.3 | |
163,133 | - | DVU0127 | 0.24 | -0.2 | |
163,150 | - | DVU0127 | 0.26 | -2.2 | |
163,154 | + | DVU0127 | 0.26 | -0.5 | |
163,159 | + | DVU0127 | 0.27 | -0.1 | |
163,160 | - | DVU0127 | 0.27 | -0.1 | |
163,277 | - | DVU0127 | 0.37 | -0.7 | |
163,303 | + | DVU0127 | 0.40 | +0.2 | |
163,303 | + | DVU0127 | 0.40 | +0.1 | |
163,303 | + | DVU0127 | 0.40 | -1.0 | |
163,325 | - | DVU0127 | 0.42 | -1.0 | |
163,364 | + | DVU0127 | 0.45 | -0.3 | |
163,364 | + | DVU0127 | 0.45 | -0.8 | |
163,372 | - | DVU0127 | 0.46 | -0.3 | |
163,434 | + | DVU0127 | 0.51 | -1.1 | |
163,471 | - | DVU0127 | 0.55 | -0.5 | |
163,486 | - | DVU0127 | 0.56 | -0.2 | |
163,496 | - | DVU0127 | 0.57 | -0.4 | |
163,511 | - | DVU0127 | 0.58 | -1.4 | |
163,574 | - | DVU0127 | 0.64 | -2.5 | |
163,578 | + | DVU0127 | 0.64 | -2.2 | |
163,591 | - | DVU0127 | 0.65 | -0.4 | |
163,719 | - | DVU0127 | 0.77 | -0.2 | |
163,759 | - | DVU0127 | 0.81 | -2.1 | |
163,791 | - | DVU0127 | 0.83 | -0.6 | |
163,818 | + | DVU0127 | 0.86 | -0.2 | |
163,825 | + | DVU0127 | 0.87 | -0.3 | |
163,826 | - | DVU0127 | 0.87 | -1.3 | |
163,885 | + | +0.2 | |||
163,966 | - | -0.1 | |||
163,972 | - | -0.2 | |||
164,034 | + | -0.5 | |||
164,034 | + | +0.4 | |||
164,042 | - | -0.2 | |||
164,241 | + | -0.3 | |||
164,249 | - | -1.9 | |||
164,272 | + | -0.3 | |||
164,282 | + | +1.3 | |||
164,290 | - | -0.2 | |||
164,443 | - | DVU0128 | 0.24 | +0.3 | |
164,443 | - | DVU0128 | 0.24 | +0.1 | |
164,457 | + | DVU0128 | 0.25 | -0.1 | |
164,460 | - | DVU0128 | 0.25 | -1.1 | |
164,495 | - | DVU0128 | 0.29 | +1.2 | |
164,501 | + | DVU0128 | 0.29 | -0.4 | |
164,501 | + | DVU0128 | 0.29 | +0.2 | |
164,501 | + | DVU0128 | 0.29 | -0.0 | |
164,514 | + | DVU0128 | 0.31 | -0.1 | |
164,527 | + | DVU0128 | 0.32 | -0.2 | |
164,593 | + | DVU0128 | 0.38 | -0.3 | |
164,742 | - | DVU0128 | 0.52 | +1.1 | |
164,859 | - | DVU0128 | 0.63 | -1.0 |
Or see this region's nucleotide sequence