Experiment: MoYLS4 with Nitrite 0.025mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0123 and DVU0124 are separated by 46 nucleotides DVU0124 and DVU0125 are separated by 202 nucleotides
DVU0123: DVU0123 - membrane protein, putative (TIGR), at 156,693 to 157,775
DVU0123
DVU0124: DVU0124 - hypothetical protein (TIGR), at 157,822 to 158,010
DVU0124
DVU0125: DVU0125 - hypothetical protein (TIGR), at 158,213 to 159,346
DVU0125
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1 at 156.855 kb on + strand, within DVU0123 at 156.864 kb on + strand, within DVU0123 at 156.885 kb on - strand, within DVU0123 at 156.985 kb on + strand, within DVU0123 at 157.071 kb on + strand, within DVU0123 at 157.128 kb on - strand, within DVU0123 at 157.143 kb on - strand, within DVU0123 at 157.162 kb on + strand, within DVU0123 at 157.170 kb on - strand, within DVU0123 at 157.180 kb on - strand, within DVU0123 at 157.180 kb on - strand, within DVU0123 at 157.254 kb on + strand, within DVU0123 at 157.357 kb on + strand, within DVU0123 at 157.365 kb on - strand, within DVU0123 at 157.405 kb on + strand, within DVU0123 at 157.423 kb on + strand, within DVU0123 at 157.433 kb on - strand, within DVU0123 at 157.455 kb on - strand, within DVU0123 at 157.501 kb on + strand, within DVU0123 at 157.529 kb on + strand, within DVU0123 at 157.537 kb on - strand, within DVU0123 at 157.569 kb on - strand, within DVU0123 at 157.621 kb on + strand, within DVU0123 at 157.629 kb on - strand, within DVU0123 at 157.629 kb on - strand, within DVU0123 at 157.640 kb on + strand, within DVU0123 at 157.653 kb on - strand, within DVU0123 at 157.694 kb on - strand at 157.731 kb on + strand at 157.782 kb on + strand at 158.000 kb on - strand at 158.007 kb on - strand at 158.022 kb on + strand at 158.022 kb on + strand at 158.023 kb on - strand at 158.156 kb on + strand at 158.159 kb on - strand at 158.164 kb on - strand at 158.169 kb on + strand at 158.169 kb on + strand at 158.177 kb on - strand at 158.184 kb on + strand at 158.254 kb on + strand at 158.262 kb on - strand at 158.357 kb on - strand, within DVU0125 at 158.386 kb on - strand, within DVU0125 at 158.428 kb on + strand, within DVU0125 at 158.443 kb on + strand, within DVU0125 at 158.486 kb on + strand, within DVU0125 at 158.503 kb on - strand, within DVU0125 at 158.525 kb on - strand, within DVU0125 at 158.579 kb on + strand, within DVU0125 at 158.698 kb on + strand, within DVU0125 at 158.706 kb on - strand, within DVU0125 at 158.706 kb on - strand, within DVU0125 at 158.706 kb on - strand, within DVU0125 at 158.816 kb on - strand, within DVU0125 at 158.908 kb on - strand, within DVU0125 at 158.972 kb on + strand, within DVU0125
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrite 0.025mg/mL remove 156,855 + DVU0123 0.15 -0.3 156,864 + DVU0123 0.16 +0.1 156,885 - DVU0123 0.18 +0.4 156,985 + DVU0123 0.27 -1.1 157,071 + DVU0123 0.35 +0.0 157,128 - DVU0123 0.40 -0.1 157,143 - DVU0123 0.42 +0.6 157,162 + DVU0123 0.43 -0.4 157,170 - DVU0123 0.44 -0.3 157,180 - DVU0123 0.45 -0.0 157,180 - DVU0123 0.45 -0.6 157,254 + DVU0123 0.52 +0.7 157,357 + DVU0123 0.61 -0.5 157,365 - DVU0123 0.62 -0.6 157,405 + DVU0123 0.66 -0.1 157,423 + DVU0123 0.67 +0.2 157,433 - DVU0123 0.68 -0.1 157,455 - DVU0123 0.70 -1.0 157,501 + DVU0123 0.75 +0.1 157,529 + DVU0123 0.77 -0.0 157,537 - DVU0123 0.78 +0.7 157,569 - DVU0123 0.81 -0.1 157,621 + DVU0123 0.86 -0.2 157,629 - DVU0123 0.86 -0.1 157,629 - DVU0123 0.86 +0.0 157,640 + DVU0123 0.87 -0.4 157,653 - DVU0123 0.89 -0.1 157,694 - +0.0 157,731 + -0.5 157,782 + +0.0 158,000 - +0.3 158,007 - +0.2 158,022 + +0.1 158,022 + -1.3 158,023 - -0.2 158,156 + -1.3 158,159 - -0.2 158,164 - -0.2 158,169 + -0.3 158,169 + +0.2 158,177 - +0.7 158,184 + +0.5 158,254 + -0.6 158,262 - +0.7 158,357 - DVU0125 0.13 -0.5 158,386 - DVU0125 0.15 -1.8 158,428 + DVU0125 0.19 -0.2 158,443 + DVU0125 0.20 +0.5 158,486 + DVU0125 0.24 +1.1 158,503 - DVU0125 0.26 -0.4 158,525 - DVU0125 0.28 +0.5 158,579 + DVU0125 0.32 -0.2 158,698 + DVU0125 0.43 -0.2 158,706 - DVU0125 0.43 -0.2 158,706 - DVU0125 0.43 -0.5 158,706 - DVU0125 0.43 -0.4 158,816 - DVU0125 0.53 -1.2 158,908 - DVU0125 0.61 +0.3 158,972 + DVU0125 0.67 +0.1
Or see this region's nucleotide sequence