Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11505

Experiment: acetate 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate 20 mM
2,554,491	+		LRK54_RS11500	0.30	+0.3
2,554,491	+		LRK54_RS11500	0.30	-2.2
2,554,491	+		LRK54_RS11500	0.30	-0.3
2,554,491	+		LRK54_RS11500	0.30	-2.5
2,554,491	+		LRK54_RS11500	0.30	-0.7
2,554,491	+		LRK54_RS11500	0.30	-1.8
2,554,491	+		LRK54_RS11500	0.30	-3.4
2,554,491	+		LRK54_RS11500	0.30	+0.9
2,554,491	+		LRK54_RS11500	0.30	-0.9
2,554,491	+		LRK54_RS11500	0.30	+0.6
2,554,492	-		LRK54_RS11500	0.30	+0.6
2,554,492	-		LRK54_RS11500	0.30	+1.3
2,554,492	-		LRK54_RS11500	0.30	-1.2
2,554,492	-		LRK54_RS11500	0.30	-0.9
2,554,492	-		LRK54_RS11500	0.30	-0.7
2,554,492	-		LRK54_RS11500	0.30	-1.0
2,554,492	-		LRK54_RS11500	0.30	+0.3
2,554,492	-		LRK54_RS11500	0.30	-2.0
2,554,492	-		LRK54_RS11500	0.30	+2.5
2,554,492	-		LRK54_RS11500	0.30	+0.2
2,554,500	+		LRK54_RS11500	0.30	-2.8
2,554,500	+		LRK54_RS11500	0.30	-0.4
2,554,500	+		LRK54_RS11500	0.30	+0.5
2,554,500	+		LRK54_RS11500	0.30	+1.0
2,554,500	+		LRK54_RS11500	0.30	-0.2
2,554,501	-		LRK54_RS11500	0.30	-0.1
2,554,501	-		LRK54_RS11500	0.30	-0.9
2,554,501	-		LRK54_RS11500	0.30	+0.9
2,554,501	-		LRK54_RS11500	0.30	+2.9
2,554,501	-		LRK54_RS11500	0.30	+0.3
2,554,501	-		LRK54_RS11500	0.30	-3.9
2,554,502	-		LRK54_RS11500	0.30	-1.7
2,554,617	+		LRK54_RS11500	0.40	+1.1
2,554,617	+		LRK54_RS11500	0.40	-2.9
2,554,617	+		LRK54_RS11500	0.40	-1.2
2,554,617	+		LRK54_RS11500	0.40	-1.9
2,554,617	+		LRK54_RS11500	0.40	-0.4
2,554,617	+		LRK54_RS11500	0.40	-0.2
2,554,617	+		LRK54_RS11500	0.40	-1.5
2,554,617	+		LRK54_RS11500	0.40	-1.6
2,554,617	+		LRK54_RS11500	0.40	+0.1
2,554,617	+		LRK54_RS11500	0.40	-2.8
2,554,617	+		LRK54_RS11500	0.40	+1.0
2,554,617	+		LRK54_RS11500	0.40	+0.8
2,554,617	+		LRK54_RS11500	0.40	+0.7
2,554,617	+		LRK54_RS11500	0.40	+0.2
2,554,617	+		LRK54_RS11500	0.40	+0.1
2,554,617	+		LRK54_RS11500	0.40	-1.2
2,554,617	+		LRK54_RS11500	0.40	+0.9
2,554,618	-		LRK54_RS11500	0.41	+1.4
2,554,618	-		LRK54_RS11500	0.41	+0.6
2,554,618	-		LRK54_RS11500	0.41	+1.2
2,554,618	-		LRK54_RS11500	0.41	-0.9
2,554,618	-		LRK54_RS11500	0.41	+0.8
2,554,618	-		LRK54_RS11500	0.41	-0.4
2,554,618	-		LRK54_RS11500	0.41	+0.5
2,554,618	-		LRK54_RS11500	0.41	-0.0
2,554,618	-		LRK54_RS11500	0.41	-0.7
2,554,618	-		LRK54_RS11500	0.41	-0.7
2,554,618	-		LRK54_RS11500	0.41	-0.5
2,554,618	-		LRK54_RS11500	0.41	-0.4
2,554,618	-		LRK54_RS11500	0.41	+0.1
2,554,618	-		LRK54_RS11500	0.41	+1.0
2,554,618	-		LRK54_RS11500	0.41	-0.7
2,554,618	-		LRK54_RS11500	0.41	+0.9
2,554,618	-		LRK54_RS11500	0.41	+1.1
2,554,618	-		LRK54_RS11500	0.41	-1.1
2,554,653	+		LRK54_RS11500	0.44	+0.2
2,554,779	+		LRK54_RS11500	0.54	-0.8
2,554,779	+		LRK54_RS11500	0.54	+0.3
2,554,779	+		LRK54_RS11500	0.54	-0.1
2,554,779	+		LRK54_RS11500	0.54	-2.6
2,554,779	+		LRK54_RS11500	0.54	-0.1
2,554,779	+		LRK54_RS11500	0.54	-0.4
2,554,779	+		LRK54_RS11500	0.54	-0.4
2,554,780	-		LRK54_RS11500	0.54	+1.5
2,554,780	-		LRK54_RS11500	0.54	-1.1
2,554,780	-		LRK54_RS11500	0.54	-1.1
2,554,780	-		LRK54_RS11500	0.54	-0.8
2,554,780	-		LRK54_RS11500	0.54	+0.8
2,554,780	-		LRK54_RS11500	0.54	+0.5
2,554,780	-		LRK54_RS11500	0.54	+3.5
2,554,780	-		LRK54_RS11500	0.54	-0.3
2,554,780	-		LRK54_RS11500	0.54	+0.8
2,555,043	+		LRK54_RS11500	0.77	-0.9
2,555,043	+		LRK54_RS11500	0.77	+0.3
2,555,043	+		LRK54_RS11500	0.77	-2.5
2,555,043	+		LRK54_RS11500	0.77	-0.7
2,555,044	-		LRK54_RS11500	0.77	+1.1
2,555,044	-		LRK54_RS11500	0.77	+1.4
2,555,044	-		LRK54_RS11500	0.77	+1.0
2,555,124	+		LRK54_RS11500	0.84	-1.7
2,555,124	+		LRK54_RS11500	0.84	+1.2
2,555,124	+		LRK54_RS11500	0.84	+0.8
2,555,124	+		LRK54_RS11500	0.84	-2.0
2,555,125	-		LRK54_RS11500	0.84	-1.0
2,555,125	-		LRK54_RS11500	0.84	+1.0
2,555,125	-		LRK54_RS11500	0.84	+1.4
2,555,125	-		LRK54_RS11500	0.84	+1.2
2,555,125	-		LRK54_RS11500	0.84	-1.3
2,555,125	-		LRK54_RS11500	0.84	+0.5
2,555,153	+		LRK54_RS11500	0.87	+0.9
2,555,153	+		LRK54_RS11500	0.87	+0.7
2,555,153	+		LRK54_RS11500	0.87	-0.0
2,555,154	-		LRK54_RS11500	0.87	-1.8
2,555,154	-		LRK54_RS11500	0.87	-1.0
2,555,154	-		LRK54_RS11500	0.87	-2.0
2,555,154	-		LRK54_RS11500	0.87	+0.4
2,555,154	-		LRK54_RS11500	0.87	-0.9
2,555,154	-		LRK54_RS11500	0.87	-0.7
2,555,154	-		LRK54_RS11500	0.87	+0.9
2,555,193	+				-3.9
2,555,193	+				+1.1
2,555,193	+				+0.9
2,555,193	+				+0.9
2,555,193	+				-2.0
2,555,193	+				-2.4
2,555,194	-				+1.0
2,555,194	-				-1.6
2,555,241	+				-1.8
2,555,242	-				+0.4
2,555,320	+				-2.2
2,555,320	+				+0.3
2,555,320	+				-2.2
2,555,320	+				+0.8
2,555,320	+				-0.2
2,555,320	+				-0.1
2,555,320	+				+1.9
2,555,320	+				-0.1
2,555,320	+				+0.6
2,555,320	+				+0.6
2,555,320	+				-1.1
2,555,320	+				+0.9
2,555,321	-				-0.9
2,555,321	-				+0.6
2,555,321	-				-0.5
2,555,321	-				+0.3
2,555,321	-				-1.4
2,555,321	-				+1.0
2,555,321	-				+1.4
2,555,321	-				-2.6
2,555,321	-				-0.1
2,555,321	-				+0.7
2,555,321	-				-2.6
2,555,321	-				-0.0
2,555,321	-				-1.4
2,555,321	-				-0.4
2,555,321	-				-0.1
2,555,321	-				+0.6
2,555,321	-				-0.8
2,555,321	-				+0.2
2,555,321	-				+2.1
2,555,759	+		LRK54_RS11505	0.30	-1.5
2,555,814	+		LRK54_RS11505	0.34	+0.1
2,555,814	+		LRK54_RS11505	0.34	-1.8
2,555,815	-		LRK54_RS11505	0.34	-2.1
2,555,939	+		LRK54_RS11505	0.43	-1.4
2,556,000	-		LRK54_RS11505	0.48	-2.0
2,556,000	-		LRK54_RS11505	0.48	-1.2
2,556,039	+		LRK54_RS11505	0.50	-1.7
2,556,039	+		LRK54_RS11505	0.50	+0.5
2,556,162	-		LRK54_RS11505	0.59	+0.3
2,556,162	-		LRK54_RS11505	0.59	-0.4
2,556,260	+		LRK54_RS11505	0.66	-1.2
2,556,260	+		LRK54_RS11505	0.66	+0.6
2,556,261	-		LRK54_RS11505	0.66	-1.8
2,556,261	-		LRK54_RS11505	0.66	-0.4
2,556,338	+		LRK54_RS11505	0.72	-0.1
2,556,338	+		LRK54_RS11505	0.72	-2.4
2,556,338	+		LRK54_RS11505	0.72	-0.7
2,556,338	+		LRK54_RS11505	0.72	-0.7
2,556,377	+		LRK54_RS11505	0.74	-0.1
2,556,378	-		LRK54_RS11505	0.74	-0.9
2,556,378	-		LRK54_RS11505	0.74	-0.5
2,556,521	+		LRK54_RS11505	0.85	-0.9
2,556,521	+		LRK54_RS11505	0.85	-1.8
2,556,521	+		LRK54_RS11505	0.85	-2.0
2,556,521	+		LRK54_RS11505	0.85	-0.6
2,556,521	+		LRK54_RS11505	0.85	-0.9
2,556,521	+		LRK54_RS11505	0.85	-0.7
2,556,521	+		LRK54_RS11505	0.85	-0.8
2,556,521	+		LRK54_RS11505	0.85	-0.7
2,556,521	+		LRK54_RS11505	0.85	-0.8
2,556,521	+		LRK54_RS11505	0.85	+0.0
2,556,521	+		LRK54_RS11505	0.85	-1.8
2,556,521	+		LRK54_RS11505	0.85	-0.1
2,556,522	-		LRK54_RS11505	0.85	+3.3
2,556,522	-		LRK54_RS11505	0.85	+0.8
2,556,522	-		LRK54_RS11505	0.85	+0.3
2,556,522	-		LRK54_RS11505	0.85	-0.4
2,556,522	-		LRK54_RS11505	0.85	+2.9
2,556,522	-		LRK54_RS11505	0.85	+1.7
2,556,572	+		LRK54_RS11505	0.88	-1.6
2,556,572	+		LRK54_RS11505	0.88	-2.4
2,556,572	+		LRK54_RS11505	0.88	-1.1
2,556,572	+		LRK54_RS11505	0.88	-1.4
2,556,572	+		LRK54_RS11505	0.88	-0.2
2,556,572	+		LRK54_RS11505	0.88	-0.3
2,556,573	-		LRK54_RS11505	0.88	-0.9
2,556,573	-		LRK54_RS11505	0.88	-1.1
2,556,573	-		LRK54_RS11505	0.88	+0.7
2,556,603	-				-0.4
2,556,898	+		LRK54_RS11510	0.10	-0.5
2,556,992	+		LRK54_RS11510	0.19	-0.1
2,556,992	+		LRK54_RS11510	0.19	+1.9
2,556,992	+		LRK54_RS11510	0.19	+0.6
2,556,992	+		LRK54_RS11510	0.19	-1.4
2,556,992	+		LRK54_RS11510	0.19	-1.2
2,556,993	-		LRK54_RS11510	0.19	-2.1
2,556,993	-		LRK54_RS11510	0.19	-1.5
2,556,993	-		LRK54_RS11510	0.19	-1.6
2,556,993	-		LRK54_RS11510	0.19	-1.8
2,556,993	-		LRK54_RS11510	0.19	-0.1
2,556,993	-		LRK54_RS11510	0.19	-0.7
2,556,993	-		LRK54_RS11510	0.19	-1.6
2,556,993	-		LRK54_RS11510	0.19	-1.1
2,556,993	-		LRK54_RS11510	0.19	+1.7
2,557,109	+		LRK54_RS11510	0.29	+0.1
2,557,110	-		LRK54_RS11510	0.29	+0.3
2,557,110	-		LRK54_RS11510	0.29	-1.8
2,557,110	-		LRK54_RS11510	0.29	-1.4
2,557,130	+		LRK54_RS11510	0.31	-1.1
2,557,130	+		LRK54_RS11510	0.31	+2.9
2,557,131	-		LRK54_RS11510	0.31	-0.0
2,557,145	+		LRK54_RS11510	0.33	+0.3
2,557,145	+		LRK54_RS11510	0.33	+1.0
2,557,145	+		LRK54_RS11510	0.33	-1.4
2,557,145	+		LRK54_RS11510	0.33	-1.2
2,557,146	-		LRK54_RS11510	0.33	+0.1
2,557,146	-		LRK54_RS11510	0.33	+0.3
2,557,205	+		LRK54_RS11510	0.38	-0.6
2,557,205	+		LRK54_RS11510	0.38	-0.1
2,557,205	+		LRK54_RS11510	0.38	-1.4
2,557,205	+		LRK54_RS11510	0.38	-2.4
2,557,205	+		LRK54_RS11510	0.38	-1.9
2,557,206	-		LRK54_RS11510	0.38	-3.6
2,557,206	-		LRK54_RS11510	0.38	+1.6
2,557,206	-		LRK54_RS11510	0.38	-0.7
2,557,206	-		LRK54_RS11510	0.38	-0.4
2,557,206	-		LRK54_RS11510	0.38	-2.2
2,557,319	+		LRK54_RS11510	0.48	-0.2
2,557,320	-		LRK54_RS11510	0.48	-0.7
2,557,320	-		LRK54_RS11510	0.48	-0.7
2,557,320	-		LRK54_RS11510	0.48	-0.7
2,557,391	+		LRK54_RS11510	0.55	-0.4
2,557,391	+		LRK54_RS11510	0.55	-0.2
2,557,391	+		LRK54_RS11510	0.55	+0.4
2,557,391	+		LRK54_RS11510	0.55	-1.6
2,557,392	-		LRK54_RS11510	0.55	-0.6
2,557,392	-		LRK54_RS11510	0.55	+0.8
2,557,392	-		LRK54_RS11510	0.55	+0.3
2,557,478	+		LRK54_RS11510	0.63	-3.4
2,557,479	-		LRK54_RS11510	0.63	-0.7