Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19030 and IAI47_19035 are separated by 472 nucleotides IAI47_19035 and IAI47_19040 are separated by 160 nucleotides IAI47_19040 and IAI47_19045 are separated by 195 nucleotides
IAI47_19030: IAI47_19030 - hypothetical protein, at 37,143 to 37,337
_19030
IAI47_19035: IAI47_19035 - transcriptional regulator, at 37,810 to 38,064
_19035
IAI47_19040: IAI47_19040 - hypothetical protein, at 38,225 to 38,518
_19040
IAI47_19045: IAI47_19045 - two-component-system connector protein YcgZ, at 38,714 to 38,959
_19045
Position (kb) 37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 36.828 kb on - strand at 36.828 kb on - strand at 36.906 kb on + strand at 36.941 kb on + strand at 36.942 kb on - strand at 36.957 kb on + strand at 36.957 kb on + strand at 36.968 kb on + strand at 36.977 kb on - strand at 36.978 kb on + strand at 36.978 kb on + strand at 36.979 kb on - strand at 36.984 kb on - strand at 37.015 kb on + strand at 37.015 kb on + strand at 37.015 kb on + strand at 37.015 kb on + strand at 37.015 kb on + strand at 37.016 kb on - strand at 37.018 kb on + strand at 37.018 kb on + strand at 37.032 kb on - strand at 37.034 kb on - strand at 37.037 kb on + strand at 37.037 kb on + strand at 37.038 kb on - strand at 37.038 kb on - strand at 37.062 kb on - strand at 37.063 kb on + strand at 37.064 kb on - strand at 37.103 kb on + strand at 37.116 kb on + strand at 37.116 kb on + strand at 37.116 kb on + strand at 37.117 kb on - strand at 37.119 kb on - strand at 37.124 kb on + strand at 37.124 kb on + strand at 37.124 kb on + strand at 37.124 kb on + strand at 37.149 kb on + strand at 37.149 kb on + strand at 37.160 kb on + strand at 37.190 kb on - strand, within IAI47_19030 at 37.190 kb on - strand, within IAI47_19030 at 37.235 kb on + strand, within IAI47_19030 at 37.237 kb on + strand, within IAI47_19030 at 37.286 kb on + strand, within IAI47_19030 at 37.286 kb on + strand, within IAI47_19030 at 37.287 kb on - strand, within IAI47_19030 at 37.287 kb on - strand, within IAI47_19030 at 37.417 kb on + strand at 37.418 kb on - strand at 37.418 kb on - strand at 37.418 kb on - strand at 37.418 kb on - strand at 37.447 kb on + strand at 37.447 kb on + strand at 37.447 kb on + strand at 37.448 kb on - strand at 37.480 kb on + strand at 37.480 kb on + strand at 37.480 kb on + strand at 37.482 kb on + strand at 37.482 kb on + strand at 37.483 kb on - strand at 37.483 kb on - strand at 37.512 kb on - strand at 37.525 kb on + strand at 37.629 kb on + strand at 37.629 kb on + strand at 37.648 kb on + strand at 37.649 kb on - strand at 37.651 kb on + strand at 37.652 kb on - strand at 37.708 kb on + strand at 37.709 kb on - strand at 37.778 kb on + strand at 37.778 kb on + strand at 37.779 kb on - strand at 37.861 kb on - strand, within IAI47_19035 at 37.924 kb on - strand, within IAI47_19035 at 38.005 kb on + strand, within IAI47_19035 at 38.019 kb on + strand, within IAI47_19035 at 38.123 kb on + strand at 38.155 kb on + strand at 38.201 kb on + strand at 38.210 kb on + strand at 38.211 kb on - strand at 38.214 kb on + strand at 38.214 kb on + strand at 38.214 kb on + strand at 38.214 kb on + strand at 38.214 kb on + strand at 38.215 kb on - strand at 38.215 kb on - strand at 38.215 kb on - strand at 38.278 kb on + strand, within IAI47_19040 at 38.278 kb on + strand, within IAI47_19040 at 38.278 kb on + strand, within IAI47_19040 at 38.278 kb on + strand, within IAI47_19040 at 38.278 kb on + strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.281 kb on + strand, within IAI47_19040 at 38.281 kb on + strand, within IAI47_19040 at 38.281 kb on + strand, within IAI47_19040 at 38.282 kb on - strand, within IAI47_19040 at 38.282 kb on - strand, within IAI47_19040 at 38.282 kb on - strand, within IAI47_19040 at 38.282 kb on - strand, within IAI47_19040 at 38.369 kb on + strand, within IAI47_19040 at 38.417 kb on + strand, within IAI47_19040 at 38.418 kb on - strand, within IAI47_19040 at 38.418 kb on - strand, within IAI47_19040 at 38.456 kb on + strand, within IAI47_19040 at 38.456 kb on + strand, within IAI47_19040 at 38.477 kb on + strand, within IAI47_19040 at 38.478 kb on - strand, within IAI47_19040 at 38.478 kb on - strand, within IAI47_19040 at 38.514 kb on + strand at 38.514 kb on + strand at 38.514 kb on + strand at 38.514 kb on + strand at 38.515 kb on - strand at 38.515 kb on - strand at 38.515 kb on - strand at 38.518 kb on + strand at 38.518 kb on + strand at 38.518 kb on + strand at 38.518 kb on + strand at 38.518 kb on + strand at 38.519 kb on - strand at 38.519 kb on - strand at 38.519 kb on - strand at 38.563 kb on + strand at 38.564 kb on - strand at 38.597 kb on - strand at 38.609 kb on + strand at 38.609 kb on + strand at 38.609 kb on + strand at 38.621 kb on + strand at 38.621 kb on + strand at 38.621 kb on + strand at 38.621 kb on + strand at 38.622 kb on - strand at 38.626 kb on - strand at 38.626 kb on - strand at 38.631 kb on - strand at 38.631 kb on - strand at 38.631 kb on - strand at 38.631 kb on - strand at 38.652 kb on + strand at 38.652 kb on + strand at 38.676 kb on + strand at 38.676 kb on + strand at 38.677 kb on - strand at 38.677 kb on - strand at 38.697 kb on - strand at 38.697 kb on - strand at 38.715 kb on + strand at 38.715 kb on + strand at 38.716 kb on - strand at 38.822 kb on - strand, within IAI47_19045 at 38.833 kb on + strand, within IAI47_19045 at 38.834 kb on - strand, within IAI47_19045 at 38.834 kb on - strand, within IAI47_19045 at 38.834 kb on - strand, within IAI47_19045 at 38.896 kb on + strand, within IAI47_19045 at 38.910 kb on + strand, within IAI47_19045 at 38.921 kb on - strand, within IAI47_19045 at 38.926 kb on + strand, within IAI47_19045 at 39.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 36,828 - -0.2 36,828 - +0.1 36,906 + -2.1 36,941 + -1.9 36,942 - -0.6 36,957 + +0.1 36,957 + +0.7 36,968 + -0.6 36,977 - -0.1 36,978 + +0.9 36,978 + -1.5 36,979 - +3.0 36,984 - -0.4 37,015 + -2.0 37,015 + -0.1 37,015 + -0.8 37,015 + -1.6 37,015 + +0.1 37,016 - +3.0 37,018 + -1.0 37,018 + +1.3 37,032 - -3.1 37,034 - +0.2 37,037 + -0.9 37,037 + +1.9 37,038 - -0.0 37,038 - +0.2 37,062 - -0.2 37,063 + +0.0 37,064 - -1.9 37,103 + -0.9 37,116 + +1.3 37,116 + +1.4 37,116 + -2.0 37,117 - +1.4 37,119 - +1.0 37,124 + -1.3 37,124 + +2.0 37,124 + -1.1 37,124 + +0.1 37,149 + +0.7 37,149 + -0.7 37,160 + -0.2 37,190 - IAI47_19030 0.24 +0.9 37,190 - IAI47_19030 0.24 -0.7 37,235 + IAI47_19030 0.47 -1.2 37,237 + IAI47_19030 0.48 -1.0 37,286 + IAI47_19030 0.73 +1.7 37,286 + IAI47_19030 0.73 +0.4 37,287 - IAI47_19030 0.74 -0.0 37,287 - IAI47_19030 0.74 +1.0 37,417 + -0.2 37,418 - +1.6 37,418 - -0.4 37,418 - +0.4 37,418 - +0.4 37,447 + -2.0 37,447 + -1.8 37,447 + +1.6 37,448 - -0.5 37,480 + +1.1 37,480 + +0.9 37,480 + +0.4 37,482 + -1.6 37,482 + -0.2 37,483 - -1.4 37,483 - +0.0 37,512 - +0.7 37,525 + +1.4 37,629 + +0.2 37,629 + -0.3 37,648 + -0.9 37,649 - -0.6 37,651 + +1.5 37,652 - -1.0 37,708 + -0.8 37,709 - -1.1 37,778 + +0.1 37,778 + +2.3 37,779 - +0.4 37,861 - IAI47_19035 0.20 +2.3 37,924 - IAI47_19035 0.45 -0.4 38,005 + IAI47_19035 0.76 -0.1 38,019 + IAI47_19035 0.82 -0.0 38,123 + +0.5 38,155 + +2.8 38,201 + +0.3 38,210 + -0.9 38,211 - +1.4 38,214 + -0.6 38,214 + +0.1 38,214 + -0.9 38,214 + +0.2 38,214 + -1.7 38,215 - +0.9 38,215 - +1.2 38,215 - +0.2 38,278 + IAI47_19040 0.18 -2.8 38,278 + IAI47_19040 0.18 -1.6 38,278 + IAI47_19040 0.18 -0.7 38,278 + IAI47_19040 0.18 -2.6 38,278 + IAI47_19040 0.18 -0.4 38,279 - IAI47_19040 0.18 -2.8 38,279 - IAI47_19040 0.18 -1.3 38,279 - IAI47_19040 0.18 +0.3 38,279 - IAI47_19040 0.18 -0.0 38,279 - IAI47_19040 0.18 +1.2 38,279 - IAI47_19040 0.18 -1.1 38,279 - IAI47_19040 0.18 -2.4 38,281 + IAI47_19040 0.19 -1.3 38,281 + IAI47_19040 0.19 +0.2 38,281 + IAI47_19040 0.19 +0.2 38,282 - IAI47_19040 0.19 +1.2 38,282 - IAI47_19040 0.19 +1.5 38,282 - IAI47_19040 0.19 +0.2 38,282 - IAI47_19040 0.19 +0.5 38,369 + IAI47_19040 0.49 -0.6 38,417 + IAI47_19040 0.65 -1.4 38,418 - IAI47_19040 0.66 -2.4 38,418 - IAI47_19040 0.66 +0.4 38,456 + IAI47_19040 0.79 -0.1 38,456 + IAI47_19040 0.79 +1.7 38,477 + IAI47_19040 0.86 +0.2 38,478 - IAI47_19040 0.86 +1.1 38,478 - IAI47_19040 0.86 +1.4 38,514 + -0.6 38,514 + -2.6 38,514 + -0.9 38,514 + +0.4 38,515 - -0.4 38,515 - -0.3 38,515 - -1.7 38,518 + +0.2 38,518 + -0.3 38,518 + -1.1 38,518 + -1.3 38,518 + -0.9 38,519 - -1.4 38,519 - -0.8 38,519 - -0.9 38,563 + -0.4 38,564 - -0.1 38,597 - -0.5 38,609 + -0.1 38,609 + +2.3 38,609 + +0.7 38,621 + +0.4 38,621 + +1.1 38,621 + +1.4 38,621 + -0.4 38,622 - -0.0 38,626 - +0.6 38,626 - -2.1 38,631 - -2.4 38,631 - +0.6 38,631 - +1.2 38,631 - +0.1 38,652 + -1.7 38,652 + +1.9 38,676 + +2.0 38,676 + +1.2 38,677 - +0.3 38,677 - +0.6 38,697 - -0.1 38,697 - -1.5 38,715 + +1.4 38,715 + -0.0 38,716 - -0.9 38,822 - IAI47_19045 0.44 +1.0 38,833 + IAI47_19045 0.48 +1.4 38,834 - IAI47_19045 0.49 -1.3 38,834 - IAI47_19045 0.49 +1.3 38,834 - IAI47_19045 0.49 +0.8 38,896 + IAI47_19045 0.74 -1.0 38,910 + IAI47_19045 0.80 +0.1 38,921 - IAI47_19045 0.84 -0.2 38,926 + IAI47_19045 0.86 +0.6 39,030 + +0.4
Or see this region's nucleotide sequence