Strain Fitness in Pantoea sp. MT58 around IAI47_18930

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_18920 and IAI47_18925 overlap by 47 nucleotidesIAI47_18925 and IAI47_18930 are separated by 96 nucleotidesIAI47_18930 and IAI47_18935 overlap by 1 nucleotidesIAI47_18935 and IAI47_18940 overlap by 4 nucleotidesIAI47_18940 and IAI47_18945 are separated by 25 nucleotides IAI47_18920: IAI47_18920 - TetR/AcrR family transcriptional regulator, at 21,704 to 22,291 _18920 IAI47_18925: IAI47_18925 - LysR family transcriptional regulator, at 22,245 to 23,138 _18925 IAI47_18930: IAI47_18930 - carboxymuconolactone decarboxylase family protein, at 23,235 to 23,540 _18930 IAI47_18935: IAI47_18935 - tautomerase family protein, at 23,540 to 23,929 _18935 IAI47_18940: IAI47_18940 - DUF4865 family protein, at 23,926 to 24,453 _18940 IAI47_18945: IAI47_18945 - RidA family protein, at 24,479 to 24,856 _18945 Position (kb) 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 22.246 kb on + strandat 22.247 kb on - strandat 22.310 kb on + strandat 22.310 kb on + strandat 22.360 kb on + strand, within IAI47_18925at 22.360 kb on + strand, within IAI47_18925at 22.409 kb on + strand, within IAI47_18925at 22.409 kb on + strand, within IAI47_18925at 22.409 kb on + strand, within IAI47_18925at 22.410 kb on - strand, within IAI47_18925at 22.410 kb on - strand, within IAI47_18925at 22.410 kb on - strand, within IAI47_18925at 22.410 kb on - strand, within IAI47_18925at 22.410 kb on - strand, within IAI47_18925at 22.431 kb on + strand, within IAI47_18925at 22.431 kb on + strand, within IAI47_18925at 22.432 kb on - strand, within IAI47_18925at 22.432 kb on - strand, within IAI47_18925at 22.432 kb on - strand, within IAI47_18925at 22.432 kb on - strand, within IAI47_18925at 22.434 kb on - strand, within IAI47_18925at 22.434 kb on - strand, within IAI47_18925at 22.729 kb on - strand, within IAI47_18925at 22.729 kb on - strand, within IAI47_18925at 22.841 kb on + strand, within IAI47_18925at 22.841 kb on + strand, within IAI47_18925at 22.842 kb on - strand, within IAI47_18925at 22.842 kb on - strand, within IAI47_18925at 22.842 kb on - strand, within IAI47_18925at 22.845 kb on + strand, within IAI47_18925at 22.845 kb on + strand, within IAI47_18925at 22.845 kb on + strand, within IAI47_18925at 22.845 kb on + strand, within IAI47_18925at 22.846 kb on - strand, within IAI47_18925at 22.846 kb on - strand, within IAI47_18925at 22.918 kb on + strand, within IAI47_18925at 22.919 kb on - strand, within IAI47_18925at 22.925 kb on + strand, within IAI47_18925at 22.926 kb on - strand, within IAI47_18925at 22.926 kb on - strand, within IAI47_18925at 22.926 kb on - strand, within IAI47_18925at 23.132 kb on + strandat 23.132 kb on + strandat 23.132 kb on + strandat 23.149 kb on + strandat 23.197 kb on + strandat 23.203 kb on + strandat 23.203 kb on + strandat 23.203 kb on + strandat 23.204 kb on - strandat 23.204 kb on - strandat 23.204 kb on - strandat 23.204 kb on - strandat 23.204 kb on - strandat 23.204 kb on - strandat 23.204 kb on - strandat 23.204 kb on - strandat 23.318 kb on + strand, within IAI47_18930at 23.318 kb on + strand, within IAI47_18930at 23.319 kb on - strand, within IAI47_18930at 23.319 kb on - strand, within IAI47_18930at 23.468 kb on + strand, within IAI47_18930at 23.468 kb on + strand, within IAI47_18930at 23.469 kb on - strand, within IAI47_18930at 23.469 kb on - strand, within IAI47_18930at 23.469 kb on - strand, within IAI47_18930at 23.485 kb on - strand, within IAI47_18930at 23.485 kb on - strand, within IAI47_18930at 23.485 kb on - strand, within IAI47_18930at 23.531 kb on + strandat 23.573 kb on + strandat 23.574 kb on - strandat 23.593 kb on + strand, within IAI47_18935at 23.594 kb on - strand, within IAI47_18935at 23.607 kb on + strand, within IAI47_18935at 23.607 kb on + strand, within IAI47_18935at 23.607 kb on + strand, within IAI47_18935at 23.607 kb on + strand, within IAI47_18935at 23.608 kb on - strand, within IAI47_18935at 23.608 kb on - strand, within IAI47_18935at 23.608 kb on - strand, within IAI47_18935at 23.695 kb on - strand, within IAI47_18935at 23.701 kb on + strand, within IAI47_18935at 23.708 kb on + strand, within IAI47_18935at 23.708 kb on + strand, within IAI47_18935at 23.709 kb on - strand, within IAI47_18935at 23.709 kb on - strand, within IAI47_18935at 23.709 kb on - strand, within IAI47_18935at 23.795 kb on + strand, within IAI47_18935at 23.795 kb on + strand, within IAI47_18935at 23.860 kb on + strand, within IAI47_18935at 23.860 kb on + strand, within IAI47_18935at 23.860 kb on + strand, within IAI47_18935at 23.861 kb on - strand, within IAI47_18935at 23.925 kb on + strandat 23.942 kb on - strandat 23.949 kb on + strandat 23.965 kb on + strandat 23.965 kb on + strandat 23.965 kb on + strandat 23.965 kb on + strandat 23.965 kb on + strandat 23.966 kb on - strandat 23.970 kb on + strandat 23.971 kb on - strandat 23.971 kb on - strandat 23.971 kb on - strandat 24.046 kb on + strand, within IAI47_18940at 24.046 kb on + strand, within IAI47_18940at 24.046 kb on + strand, within IAI47_18940at 24.046 kb on + strand, within IAI47_18940at 24.047 kb on - strand, within IAI47_18940at 24.047 kb on - strand, within IAI47_18940at 24.047 kb on - strand, within IAI47_18940at 24.091 kb on + strand, within IAI47_18940at 24.091 kb on + strand, within IAI47_18940at 24.092 kb on - strand, within IAI47_18940at 24.092 kb on - strand, within IAI47_18940at 24.103 kb on + strand, within IAI47_18940at 24.103 kb on + strand, within IAI47_18940at 24.104 kb on - strand, within IAI47_18940at 24.104 kb on - strand, within IAI47_18940at 24.104 kb on - strand, within IAI47_18940at 24.126 kb on + strand, within IAI47_18940at 24.127 kb on - strand, within IAI47_18940at 24.297 kb on + strand, within IAI47_18940at 24.297 kb on + strand, within IAI47_18940at 24.297 kb on + strand, within IAI47_18940at 24.297 kb on + strand, within IAI47_18940at 24.297 kb on + strand, within IAI47_18940at 24.298 kb on - strand, within IAI47_18940at 24.320 kb on + strand, within IAI47_18940at 24.320 kb on + strand, within IAI47_18940at 24.320 kb on + strand, within IAI47_18940at 24.320 kb on + strand, within IAI47_18940at 24.320 kb on + strand, within IAI47_18940at 24.320 kb on + strand, within IAI47_18940at 24.320 kb on + strand, within IAI47_18940at 24.321 kb on - strand, within IAI47_18940at 24.321 kb on - strand, within IAI47_18940at 24.321 kb on - strand, within IAI47_18940at 24.354 kb on - strand, within IAI47_18940at 24.354 kb on - strand, within IAI47_18940at 24.354 kb on - strand, within IAI47_18940at 24.354 kb on - strand, within IAI47_18940at 24.400 kb on + strand, within IAI47_18940at 24.413 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
remove
22,246 + +1.0
22,247 - +0.4
22,310 + +1.1
22,310 + +0.3
22,360 + IAI47_18925 0.13 -0.8
22,360 + IAI47_18925 0.13 +1.1
22,409 + IAI47_18925 0.18 +0.3
22,409 + IAI47_18925 0.18 -0.3
22,409 + IAI47_18925 0.18 +0.1
22,410 - IAI47_18925 0.18 +4.1
22,410 - IAI47_18925 0.18 -0.6
22,410 - IAI47_18925 0.18 +0.1
22,410 - IAI47_18925 0.18 -1.2
22,410 - IAI47_18925 0.18 -0.1
22,431 + IAI47_18925 0.21 -0.9
22,431 + IAI47_18925 0.21 +0.2
22,432 - IAI47_18925 0.21 +0.7
22,432 - IAI47_18925 0.21 -0.7
22,432 - IAI47_18925 0.21 +0.5
22,432 - IAI47_18925 0.21 +1.1
22,434 - IAI47_18925 0.21 +0.8
22,434 - IAI47_18925 0.21 -2.0
22,729 - IAI47_18925 0.54 -0.3
22,729 - IAI47_18925 0.54 +0.0
22,841 + IAI47_18925 0.67 -0.5
22,841 + IAI47_18925 0.67 +0.7
22,842 - IAI47_18925 0.67 -1.7
22,842 - IAI47_18925 0.67 +1.8
22,842 - IAI47_18925 0.67 +2.4
22,845 + IAI47_18925 0.67 +0.4
22,845 + IAI47_18925 0.67 -2.5
22,845 + IAI47_18925 0.67 +1.4
22,845 + IAI47_18925 0.67 +1.2
22,846 - IAI47_18925 0.67 +1.0
22,846 - IAI47_18925 0.67 +0.4
22,918 + IAI47_18925 0.75 -2.3
22,919 - IAI47_18925 0.75 -0.9
22,925 + IAI47_18925 0.76 +0.7
22,926 - IAI47_18925 0.76 +0.2
22,926 - IAI47_18925 0.76 -1.4
22,926 - IAI47_18925 0.76 -0.9
23,132 + -2.8
23,132 + +0.6
23,132 + -0.4
23,149 + -0.2
23,197 + +0.4
23,203 + +0.2
23,203 + -0.7
23,203 + +1.1
23,204 - +0.3
23,204 - +0.4
23,204 - +1.1
23,204 - +0.3
23,204 - +0.9
23,204 - +2.7
23,204 - +1.9
23,204 - -1.1
23,318 + IAI47_18930 0.27 +0.4
23,318 + IAI47_18930 0.27 +0.5
23,319 - IAI47_18930 0.27 +0.3
23,319 - IAI47_18930 0.27 +2.3
23,468 + IAI47_18930 0.76 +1.3
23,468 + IAI47_18930 0.76 -0.6
23,469 - IAI47_18930 0.76 -0.8
23,469 - IAI47_18930 0.76 +0.9
23,469 - IAI47_18930 0.76 -0.9
23,485 - IAI47_18930 0.82 +2.6
23,485 - IAI47_18930 0.82 +2.8
23,485 - IAI47_18930 0.82 +2.4
23,531 + -0.5
23,573 + -1.3
23,574 - +1.9
23,593 + IAI47_18935 0.14 -0.0
23,594 - IAI47_18935 0.14 -1.1
23,607 + IAI47_18935 0.17 +1.0
23,607 + IAI47_18935 0.17 +0.7
23,607 + IAI47_18935 0.17 +0.4
23,607 + IAI47_18935 0.17 -2.3
23,608 - IAI47_18935 0.17 +0.1
23,608 - IAI47_18935 0.17 -1.6
23,608 - IAI47_18935 0.17 +2.0
23,695 - IAI47_18935 0.40 -0.9
23,701 + IAI47_18935 0.41 +0.7
23,708 + IAI47_18935 0.43 -0.7
23,708 + IAI47_18935 0.43 +1.1
23,709 - IAI47_18935 0.43 +1.8
23,709 - IAI47_18935 0.43 +0.6
23,709 - IAI47_18935 0.43 +1.3
23,795 + IAI47_18935 0.65 -1.6
23,795 + IAI47_18935 0.65 +0.4
23,860 + IAI47_18935 0.82 -0.9
23,860 + IAI47_18935 0.82 -2.6
23,860 + IAI47_18935 0.82 -0.9
23,861 - IAI47_18935 0.82 +0.2
23,925 + +0.1
23,942 - -1.8
23,949 + -0.5
23,965 + -1.4
23,965 + +0.1
23,965 + -2.9
23,965 + +0.3
23,965 + +1.6
23,966 - +1.1
23,970 + -0.1
23,971 - -1.6
23,971 - -1.1
23,971 - +0.4
24,046 + IAI47_18940 0.23 -0.1
24,046 + IAI47_18940 0.23 -0.9
24,046 + IAI47_18940 0.23 +0.4
24,046 + IAI47_18940 0.23 -1.1
24,047 - IAI47_18940 0.23 +0.0
24,047 - IAI47_18940 0.23 -2.6
24,047 - IAI47_18940 0.23 +0.5
24,091 + IAI47_18940 0.31 -0.7
24,091 + IAI47_18940 0.31 -3.3
24,092 - IAI47_18940 0.31 +2.0
24,092 - IAI47_18940 0.31 -1.9
24,103 + IAI47_18940 0.34 -1.6
24,103 + IAI47_18940 0.34 -0.6
24,104 - IAI47_18940 0.34 -0.7
24,104 - IAI47_18940 0.34 +0.7
24,104 - IAI47_18940 0.34 +2.9
24,126 + IAI47_18940 0.38 +0.4
24,127 - IAI47_18940 0.38 -0.6
24,297 + IAI47_18940 0.70 +1.0
24,297 + IAI47_18940 0.70 -2.4
24,297 + IAI47_18940 0.70 +0.8
24,297 + IAI47_18940 0.70 -0.8
24,297 + IAI47_18940 0.70 -1.4
24,298 - IAI47_18940 0.70 -1.0
24,320 + IAI47_18940 0.75 +1.0
24,320 + IAI47_18940 0.75 -0.9
24,320 + IAI47_18940 0.75 -1.7
24,320 + IAI47_18940 0.75 +1.9
24,320 + IAI47_18940 0.75 +0.1
24,320 + IAI47_18940 0.75 -2.7
24,320 + IAI47_18940 0.75 +0.4
24,321 - IAI47_18940 0.75 +1.1
24,321 - IAI47_18940 0.75 -0.6
24,321 - IAI47_18940 0.75 -1.4
24,354 - IAI47_18940 0.81 -0.6
24,354 - IAI47_18940 0.81 -0.2
24,354 - IAI47_18940 0.81 -0.4
24,354 - IAI47_18940 0.81 -1.6
24,400 + IAI47_18940 0.90 +2.0
24,413 - +0.3

Or see this region's nucleotide sequence