Strain Fitness in Pantoea sp. MT58 around IAI47_18720

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,992,058	+		IAI47_18710	0.19	-0.5
3,992,058	+		IAI47_18710	0.19	+1.1
3,992,058	+		IAI47_18710	0.19	-1.1
3,992,058	+		IAI47_18710	0.19	-0.8
3,992,059	-		IAI47_18710	0.19	+0.1
3,992,059	-		IAI47_18710	0.19	-1.7
3,992,111	+		IAI47_18710	0.29	+1.0
3,992,111	+		IAI47_18710	0.29	+0.6
3,992,112	-		IAI47_18710	0.29	-1.0
3,992,112	-		IAI47_18710	0.29	-0.4
3,992,112	-		IAI47_18710	0.29	+3.3
3,992,112	-		IAI47_18710	0.29	-0.7
3,992,112	-		IAI47_18710	0.29	+1.9
3,992,120	-		IAI47_18710	0.30	-0.2
3,992,120	-		IAI47_18710	0.30	-1.1
3,992,120	-		IAI47_18710	0.30	-1.2
3,992,120	-		IAI47_18710	0.30	+0.3
3,992,123	+		IAI47_18710	0.31	+0.7
3,992,123	+		IAI47_18710	0.31	-0.0
3,992,123	+		IAI47_18710	0.31	-1.2
3,992,124	-		IAI47_18710	0.31	+0.0
3,992,124	-		IAI47_18710	0.31	-0.3
3,992,124	-		IAI47_18710	0.31	+1.3
3,992,124	-		IAI47_18710	0.31	-3.2
3,992,124	-		IAI47_18710	0.31	-2.4
3,992,131	-		IAI47_18710	0.32	+0.8
3,992,150	-		IAI47_18710	0.36	+0.0
3,992,192	+		IAI47_18710	0.43	+0.6
3,992,222	+		IAI47_18710	0.49	+0.0
3,992,222	+		IAI47_18710	0.49	-0.3
3,992,223	-		IAI47_18710	0.49	-1.1
3,992,223	-		IAI47_18710	0.49	+0.4
3,992,282	+		IAI47_18710	0.60	-1.1
3,992,291	-		IAI47_18710	0.62	+0.0
3,992,363	-		IAI47_18710	0.75	-0.6
3,992,363	-		IAI47_18710	0.75	+0.3
3,992,363	-		IAI47_18710	0.75	-1.5
3,992,389	+		IAI47_18710	0.79	+0.6
3,992,389	+		IAI47_18710	0.79	-1.2
3,992,390	-		IAI47_18710	0.80	+0.9
3,992,390	-		IAI47_18710	0.80	-2.9
3,992,405	+		IAI47_18710	0.82	-1.1
3,992,406	-		IAI47_18710	0.83	+0.8
3,992,467	+				+0.8
3,992,468	-				-2.1
3,992,468	-				+0.3
3,992,483	-				+0.0
3,992,495	-				-0.4
3,992,551	+				+0.9
3,992,551	+				-0.0
3,992,551	+				-0.5
3,992,552	-				-0.7
3,992,552	-				-2.0
3,992,552	-				-0.5
3,992,569	+				+1.0
3,992,569	+				+2.1
3,992,569	+				-1.9
3,992,569	+				+0.2
3,992,569	+				+0.5
3,992,570	-				-0.2
3,992,570	-				+1.6
3,992,570	-				-0.3
3,992,646	-		IAI47_18715	0.12	-0.7
3,992,680	+		IAI47_18715	0.21	-2.2
3,992,680	+		IAI47_18715	0.21	-0.4
3,992,832	-		IAI47_18715	0.63	-3.3
3,992,951	+				-2.0
3,993,025	+				+0.3
3,993,025	+				-0.5
3,993,025	+				-1.7
3,993,026	-				-0.9
3,993,026	-				+0.3
3,993,058	+				+0.1
3,993,070	+				+0.3
3,993,070	+				-1.5
3,993,070	+				-1.7
3,993,070	+				+0.8
3,993,071	-				+0.3
3,993,071	-				+0.4
3,993,086	+		IAI47_18720	0.11	-0.1
3,993,086	+		IAI47_18720	0.11	+0.5
3,993,087	-		IAI47_18720	0.11	-0.1
3,993,134	+		IAI47_18720	0.16	-0.7
3,993,134	+		IAI47_18720	0.16	-0.6
3,993,135	-		IAI47_18720	0.16	-1.6
3,993,135	-		IAI47_18720	0.16	+1.1
3,993,135	-		IAI47_18720	0.16	+3.3
3,993,135	-		IAI47_18720	0.16	+1.0
3,993,135	-		IAI47_18720	0.16	+1.9
3,993,135	-		IAI47_18720	0.16	+2.3
3,993,187	+		IAI47_18720	0.22	+0.8
3,993,187	+		IAI47_18720	0.22	+0.9
3,993,187	+		IAI47_18720	0.22	+0.7
3,993,188	-		IAI47_18720	0.22	+1.0
3,993,188	-		IAI47_18720	0.22	-1.5
3,993,203	+		IAI47_18720	0.23	-0.4
3,993,203	+		IAI47_18720	0.23	-3.1
3,993,203	+		IAI47_18720	0.23	+0.9
3,993,204	-		IAI47_18720	0.24	-2.3
3,993,204	-		IAI47_18720	0.24	+0.4
3,993,204	-		IAI47_18720	0.24	-0.9
3,993,204	-		IAI47_18720	0.24	-0.1
3,993,215	+		IAI47_18720	0.25	-2.3
3,993,215	+		IAI47_18720	0.25	-0.1
3,993,216	-		IAI47_18720	0.25	-2.4
3,993,216	-		IAI47_18720	0.25	+1.0
3,993,216	-		IAI47_18720	0.25	-0.6
3,993,258	+		IAI47_18720	0.29	-0.5
3,993,259	-		IAI47_18720	0.29	-1.6
3,993,259	-		IAI47_18720	0.29	+0.6
3,993,269	+		IAI47_18720	0.30	-1.3
3,993,299	+		IAI47_18720	0.33	-1.2
3,993,299	+		IAI47_18720	0.33	+0.8
3,993,299	+		IAI47_18720	0.33	-1.6
3,993,300	-		IAI47_18720	0.33	+0.2
3,993,300	-		IAI47_18720	0.33	-1.0
3,993,303	+		IAI47_18720	0.34	+0.6
3,993,304	-		IAI47_18720	0.34	+1.1
3,993,374	+		IAI47_18720	0.41	+1.0
3,993,375	-		IAI47_18720	0.41	-1.8
3,993,375	-		IAI47_18720	0.41	-0.1
3,993,380	+		IAI47_18720	0.42	+2.0
3,993,380	+		IAI47_18720	0.42	-1.1
3,993,381	-		IAI47_18720	0.42	+1.2
3,993,381	-		IAI47_18720	0.42	-0.3
3,993,381	-		IAI47_18720	0.42	-1.8
3,993,381	-		IAI47_18720	0.42	-0.8
3,993,399	+		IAI47_18720	0.44	+0.1
3,993,399	+		IAI47_18720	0.44	-2.4
3,993,400	-		IAI47_18720	0.44	+0.9
3,993,400	-		IAI47_18720	0.44	-1.3
3,993,411	+		IAI47_18720	0.45	+1.7
3,993,411	+		IAI47_18720	0.45	-0.3
3,993,412	-		IAI47_18720	0.45	-1.7
3,993,464	+		IAI47_18720	0.50	+0.2
3,993,476	+		IAI47_18720	0.52	-1.2
3,993,476	+		IAI47_18720	0.52	-0.8
3,993,476	+		IAI47_18720	0.52	-0.8
3,993,477	-		IAI47_18720	0.52	+0.0
3,993,477	-		IAI47_18720	0.52	-0.3
3,993,477	-		IAI47_18720	0.52	+0.7
3,993,478	+		IAI47_18720	0.52	-1.5
3,993,479	-		IAI47_18720	0.52	+0.5
3,993,486	+		IAI47_18720	0.53	+0.5
3,993,486	+		IAI47_18720	0.53	-0.1
3,993,487	-		IAI47_18720	0.53	+3.2
3,993,487	-		IAI47_18720	0.53	-0.8
3,993,487	-		IAI47_18720	0.53	-0.0
3,993,518	-		IAI47_18720	0.56	+0.3
3,993,588	-		IAI47_18720	0.63	-0.6
3,993,614	+		IAI47_18720	0.66	-1.6
3,993,614	+		IAI47_18720	0.66	+2.3
3,993,614	+		IAI47_18720	0.66	-2.3
3,993,615	-		IAI47_18720	0.66	+0.2
3,993,615	-		IAI47_18720	0.66	+1.6
3,993,630	-		IAI47_18720	0.67	+1.2
3,993,630	-		IAI47_18720	0.67	+0.9
3,993,643	+		IAI47_18720	0.69	+0.4
3,993,643	+		IAI47_18720	0.69	-1.4
3,993,644	-		IAI47_18720	0.69	-0.4
3,993,654	+		IAI47_18720	0.70	-1.3
3,993,655	-		IAI47_18720	0.70	-2.5
3,993,655	-		IAI47_18720	0.70	-2.2
3,993,655	-		IAI47_18720	0.70	+0.6
3,993,697	+		IAI47_18720	0.74	-1.6
3,993,697	+		IAI47_18720	0.74	-0.2
3,993,697	+		IAI47_18720	0.74	-1.1
3,993,697	+		IAI47_18720	0.74	-1.7
3,993,698	-		IAI47_18720	0.75	-0.8
3,993,698	-		IAI47_18720	0.75	-0.5
3,993,713	+		IAI47_18720	0.76	-0.1
3,993,713	+		IAI47_18720	0.76	+0.5
3,993,714	-		IAI47_18720	0.76	+0.2
3,993,781	+		IAI47_18720	0.83	+1.9
3,993,781	+		IAI47_18720	0.83	+0.7
3,993,782	-		IAI47_18720	0.83	-0.5
3,993,782	-		IAI47_18720	0.83	+0.8
3,993,782	-		IAI47_18720	0.83	+0.1
3,993,782	-		IAI47_18720	0.83	-0.1
3,993,804	+		IAI47_18720	0.85	-2.0
3,993,804	+		IAI47_18720	0.85	+0.3
3,993,807	+		IAI47_18720	0.86	+0.5
3,993,808	-		IAI47_18720	0.86	-0.4
3,993,868	+				-0.0
3,993,869	-				-1.3
3,993,882	+				-0.4
3,993,883	-				+0.9
3,993,929	+				-2.0
3,993,929	+				+0.9
3,993,930	-				-1.2
3,993,930	-				-1.3
3,993,930	-				+0.8
3,993,930	-				-0.1
3,993,933	+				+0.3
3,993,933	+				+1.0
3,993,933	+				-1.8
3,993,933	+				+0.5
3,993,933	+				-1.7
3,993,934	-				-0.3
3,993,934	-				+0.4
3,993,934	-				+2.2
3,993,934	-				+0.9
3,993,935	+				-0.2
3,993,935	+				+1.1
3,993,935	+				-2.4
3,993,936	-				-1.3
3,993,936	-				-0.3
3,993,936	-				-1.6
3,993,944	+				+0.7
3,993,944	+				-1.7
3,993,945	-				+1.0
3,993,967	-				-2.1
3,993,967	-				+0.8
3,993,988	+				-3.0
3,993,988	+				+1.2
3,993,989	-				+0.9
3,993,989	-				+1.1
3,993,993	+				+2.2
3,993,993	+				+0.5
3,994,000	+				+0.0
3,994,030	+				-0.6
3,994,030	+				-0.7
3,994,030	+				-1.4
3,994,031	-				-0.8
3,994,039	+				+3.4
3,994,039	+				+0.6
3,994,040	-				-2.3
3,994,040	-				-0.7
3,994,040	-				+0.6
3,994,070	+				-0.5
3,994,079	-				+0.3
3,994,084	+				-0.3
3,994,103	-				+1.5
3,994,117	+				+0.1
3,994,117	+				+1.3
3,994,133	-				+0.1
3,994,143	-				+0.2
3,994,147	+				-2.6
3,994,147	+				+0.3
3,994,148	-				+0.3
3,994,148	-				+0.5
3,994,781	-				+0.5
3,994,833	+				-0.6
3,994,833	+				-0.7
3,994,833	+				-1.0
3,994,834	-				-0.2
3,994,834	-				-2.4
3,994,834	-				+0.6
3,994,834	-				-0.6
3,994,835	+				-0.5
3,994,835	+				-0.2
3,994,835	+				-0.5
3,994,835	+				-1.3
3,994,835	+				+0.1
3,994,835	+				+1.9
3,994,835	+				-0.6
3,994,836	-				-1.1
3,994,836	-				-0.8
3,994,836	-				+1.0
3,994,836	-				-0.3
3,994,839	+				-1.0
3,994,839	+				-1.6
3,994,840	-				+2.1
3,994,850	-				+0.3
3,994,850	-				-0.8
3,994,854	+				+0.7
3,994,854	+				+1.9
3,994,854	+				+0.8
3,994,855	-				-0.2
3,994,855	-				+0.0
3,994,862	+				-0.7
3,994,862	+				-0.7
3,994,874	+				-1.3
3,994,874	+				+0.2
3,994,874	+				-0.1
3,994,875	-				-0.4
3,994,875	-				-1.3
3,994,875	-				-1.3
3,994,875	-				-1.8
3,994,883	+				-1.3
3,994,906	+				+1.6
3,994,906	+				-0.1
3,994,923	+				-2.4
3,994,923	+				+1.3