Strain Fitness in Pantoea sp. MT58 around IAI47_17340

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,672,494	-		IAI47_17335	0.47	-0.3
3,672,632	-		IAI47_17335	0.55	-0.4
3,672,632	-		IAI47_17335	0.55	-0.4
3,672,637	+		IAI47_17335	0.55	-3.4
3,672,637	+		IAI47_17335	0.55	+1.1
3,672,637	+		IAI47_17335	0.55	+0.2
3,672,638	-		IAI47_17335	0.55	-0.2
3,672,647	+		IAI47_17335	0.56	+1.2
3,672,648	-		IAI47_17335	0.56	-0.6
3,672,648	-		IAI47_17335	0.56	+1.0
3,672,648	-		IAI47_17335	0.56	-2.0
3,672,648	-		IAI47_17335	0.56	+1.2
3,672,648	-		IAI47_17335	0.56	+0.5
3,672,649	+		IAI47_17335	0.56	-0.3
3,672,649	+		IAI47_17335	0.56	-1.9
3,672,699	-		IAI47_17335	0.59	+0.7
3,672,699	-		IAI47_17335	0.59	-1.6
3,672,718	-		IAI47_17335	0.60	-1.2
3,672,718	-		IAI47_17335	0.60	-1.0
3,672,732	+		IAI47_17335	0.61	-0.7
3,672,733	-		IAI47_17335	0.61	+0.8
3,672,733	-		IAI47_17335	0.61	+0.2
3,672,843	+		IAI47_17335	0.67	+0.9
3,672,844	-		IAI47_17335	0.67	-0.1
3,672,937	+		IAI47_17335	0.73	+2.5
3,672,938	-		IAI47_17335	0.73	-1.1
3,672,996	+		IAI47_17335	0.76	+0.5
3,673,026	+		IAI47_17335	0.78	-0.5
3,673,085	-		IAI47_17335	0.81	+0.8
3,673,117	+		IAI47_17335	0.83	+1.3
3,673,117	+		IAI47_17335	0.83	-0.0
3,673,117	+		IAI47_17335	0.83	+0.3
3,673,117	+		IAI47_17335	0.83	-0.1
3,673,117	+		IAI47_17335	0.83	+1.4
3,673,118	-		IAI47_17335	0.83	+1.9
3,673,118	-		IAI47_17335	0.83	+0.0
3,673,118	-		IAI47_17335	0.83	-1.2
3,673,118	-		IAI47_17335	0.83	+0.7
3,673,130	+		IAI47_17335	0.84	-0.5
3,673,169	+		IAI47_17335	0.86	+0.6
3,673,170	-		IAI47_17335	0.86	+0.6
3,673,172	-		IAI47_17335	0.86	+1.0
3,673,172	-		IAI47_17335	0.86	-1.9
3,673,172	-		IAI47_17335	0.86	-2.2
3,673,177	+		IAI47_17335	0.87	-1.0
3,673,177	+		IAI47_17335	0.87	+0.2
3,673,178	-		IAI47_17335	0.87	-1.6
3,673,178	-		IAI47_17335	0.87	+0.2
3,673,178	-		IAI47_17335	0.87	+1.5
3,673,178	-		IAI47_17335	0.87	+1.1
3,673,178	-		IAI47_17335	0.87	+2.4
3,673,212	+		IAI47_17335	0.89	-0.4
3,673,212	+		IAI47_17335	0.89	-0.3
3,673,212	+		IAI47_17335	0.89	-0.1
3,673,212	+		IAI47_17335	0.89	+0.8
3,673,212	+		IAI47_17335	0.89	+0.2
3,673,213	-		IAI47_17335	0.89	-2.3
3,673,213	-		IAI47_17335	0.89	+1.3
3,673,213	-		IAI47_17335	0.89	-0.9
3,673,218	+		IAI47_17335	0.89	+1.5
3,673,218	+		IAI47_17335	0.89	-2.2
3,673,218	+		IAI47_17335	0.89	-1.1
3,673,218	+		IAI47_17335	0.89	-0.6
3,673,218	+		IAI47_17335	0.89	+0.3
3,673,218	+		IAI47_17335	0.89	-1.1
3,673,218	+		IAI47_17335	0.89	-0.4
3,673,218	+		IAI47_17335	0.89	+0.3
3,673,218	+		IAI47_17335	0.89	+0.2
3,673,218	+		IAI47_17335	0.89	+1.0
3,673,219	-		IAI47_17335	0.89	-1.0
3,673,219	-		IAI47_17335	0.89	+1.0
3,673,219	-		IAI47_17335	0.89	+0.2
3,673,219	-		IAI47_17335	0.89	+2.8
3,673,219	-		IAI47_17335	0.89	+0.7
3,673,219	-		IAI47_17335	0.89	-0.8
3,673,219	-		IAI47_17335	0.89	-2.0
3,673,219	-		IAI47_17335	0.89	+0.1
3,673,219	-		IAI47_17335	0.89	+0.3
3,673,221	+		IAI47_17335	0.89	+3.1
3,673,221	+				+1.8
3,673,221	+		IAI47_17335	0.89	+0.3
3,673,221	+		IAI47_17335	0.89	-0.2
3,673,221	+		IAI47_17335	0.89	+0.9
3,673,222	-		IAI47_17335	0.89	-0.1
3,673,222	-		IAI47_17335	0.89	-0.4
3,673,228	+		IAI47_17335	0.90	+1.4
3,673,276	+				+0.0
3,673,276	+				+0.0
3,673,276	+				+0.6
3,673,276	+				+0.6
3,673,276	+				-0.2
3,673,276	+				-1.1
3,673,277	-				-1.6
3,673,277	-				+1.8
3,673,394	-				+0.4
3,673,394	-				+1.5
3,673,400	+				+0.3
3,673,400	+				+1.9
3,673,400	+				-0.6
3,673,400	+				-1.2
3,673,400	+				+0.6
3,673,448	+				+2.3
3,673,449	-				+0.4
3,673,481	+				-0.2
3,673,481	+				-0.1
3,673,481	+				+0.7
3,673,565	+		IAI47_17340	0.17	-1.8
3,673,565	+		IAI47_17340	0.17	-0.2
3,673,565	+		IAI47_17340	0.17	+0.0
3,673,615	+		IAI47_17340	0.26	-2.9
3,673,615	+		IAI47_17340	0.26	+3.4
3,673,615	-		IAI47_17340	0.26	+1.1
3,673,616	-		IAI47_17340	0.26	+3.1
3,673,616	-		IAI47_17340	0.26	-1.4
3,673,616	-		IAI47_17340	0.26	+0.0
3,673,616	-		IAI47_17340	0.26	-1.3
3,673,616	-		IAI47_17340	0.26	-1.6
3,673,616	-		IAI47_17340	0.26	-0.0
3,673,616	-		IAI47_17340	0.26	-0.9
3,673,714	+		IAI47_17340	0.43	-1.8
3,673,714	+		IAI47_17340	0.43	+0.5
3,673,714	+		IAI47_17340	0.43	+0.8
3,673,714	+		IAI47_17340	0.43	-0.2
3,673,715	-		IAI47_17340	0.43	+0.6
3,673,715	-		IAI47_17340	0.43	+0.6
3,673,767	+		IAI47_17340	0.52	+1.1
3,673,779	+		IAI47_17340	0.54	+0.4
3,673,786	+		IAI47_17340	0.55	-0.0
3,673,786	+		IAI47_17340	0.55	+0.4
3,673,786	+		IAI47_17340	0.55	+0.8
3,673,786	+		IAI47_17340	0.55	-0.5
3,673,787	-		IAI47_17340	0.56	-1.3
3,673,787	-		IAI47_17340	0.56	-0.8
3,673,787	-		IAI47_17340	0.56	-1.0
3,673,885	-		IAI47_17340	0.73	+0.4
3,673,893	+		IAI47_17340	0.74	-0.9
3,673,893	+		IAI47_17340	0.74	-1.6
3,673,893	+		IAI47_17340	0.74	-2.1
3,673,893	+		IAI47_17340	0.74	-1.1
3,673,893	+		IAI47_17340	0.74	+1.2
3,673,893	+		IAI47_17340	0.74	-0.1
3,673,893	+		IAI47_17340	0.74	-0.8
3,673,893	+		IAI47_17340	0.74	-1.4
3,673,894	-		IAI47_17340	0.74	-0.9
3,673,894	-		IAI47_17340	0.74	-0.7
3,673,894	-		IAI47_17340	0.74	-1.1
3,673,894	-		IAI47_17340	0.74	+0.1
3,673,894	-		IAI47_17340	0.74	-0.8
3,673,894	-		IAI47_17340	0.74	+1.3
3,673,894	-		IAI47_17340	0.74	-1.0
3,673,894	-		IAI47_17340	0.74	-0.3
3,673,894	-		IAI47_17340	0.74	-1.7
3,673,894	-		IAI47_17340	0.74	-1.6
3,673,956	+		IAI47_17340	0.85	-1.4
3,673,957	-		IAI47_17340	0.85	-0.4
3,673,957	-		IAI47_17340	0.85	-1.5
3,673,957	-		IAI47_17340	0.85	+1.0
3,673,957	-		IAI47_17340	0.85	-1.8
3,673,957	-		IAI47_17340	0.85	+0.3
3,673,957	-		IAI47_17340	0.85	-0.6
3,674,002	+				+1.5
3,674,002	+				-0.1
3,674,003	-				-0.5
3,674,003	-				+0.4
3,674,003	-				-2.5
3,674,003	-				+0.4
3,674,049	+				-0.0
3,674,050	-				+0.5
3,674,130	+				+1.8
3,674,130	+				+0.6
3,674,295	+				+0.4
3,674,295	+				-2.8
3,674,295	+				+1.8
3,674,296	-				+0.3
3,674,296	-				+0.6
3,674,297	+				+0.9
3,674,297	+				-0.5
3,674,297	+				+1.4
3,674,297	+				-2.2
3,674,297	+				+0.3
3,674,297	+				+2.1
3,674,297	+				-0.6
3,674,297	+				+0.6
3,674,298	-				+0.1
3,674,298	-				-0.2
3,674,298	-				+0.3
3,674,298	-				+1.8
3,674,324	-				+1.7
3,674,392	+				-0.8
3,674,392	+				-0.2
3,674,456	-				+0.2
3,674,458	-				+2.8
3,674,458	-				+0.8
3,674,483	+				-0.3
3,674,602	+				+2.0
3,674,602	+				+0.0
3,674,602	+				+0.1
3,674,603	-				-0.6
3,674,603	-				-0.8
3,674,603	-				-0.4
3,674,616	-				+0.2
3,674,616	-				+1.1
3,674,622	+				+0.8
3,674,641	-				+0.8
3,674,716	+				-1.0
3,674,716	+				-1.4
3,674,716	+				+0.4
3,674,716	+				+0.4
3,674,716	+				+0.6
3,674,716	+				+2.1
3,674,717	-				-0.1
3,674,717	-				-0.2
3,674,717	-				+0.5
3,674,717	-				+0.2
3,674,729	-				-1.4
3,674,741	+				-2.3
3,674,741	+				+1.0
3,674,742	-				-1.4
3,674,742	-				+0.2
3,674,761	+				-1.9
3,674,762	-				-2.6
3,674,769	-				-0.1
3,674,782	-				-0.6
3,674,782	-				+0.1
3,674,792	-				-0.0
3,674,792	-				+1.3
3,674,800	-				-2.1
3,674,841	-				+1.5
3,674,841	-				-3.0
3,674,848	-				+0.5
3,674,848	-				-0.0
3,674,848	-				-1.1
3,674,848	-				+0.6
3,674,853	+				+1.2
3,674,854	-				+0.2
3,674,912	+		IAI47_17350	0.11	-0.3
3,674,912	+		IAI47_17350	0.11	+1.4
3,674,912	+		IAI47_17350	0.11	-1.2
3,674,913	-		IAI47_17350	0.11	-0.3
3,674,963	+		IAI47_17350	0.15	-1.9
3,674,963	+		IAI47_17350	0.15	-0.0
3,674,964	-		IAI47_17350	0.15	+0.1
3,674,965	+		IAI47_17350	0.15	+0.6
3,674,965	+		IAI47_17350	0.15	-1.7
3,674,965	+		IAI47_17350	0.15	-1.8
3,674,965	+		IAI47_17350	0.15	+1.4
3,674,965	+		IAI47_17350	0.15	+2.9
3,674,966	-		IAI47_17350	0.15	+1.1
3,674,966	-		IAI47_17350	0.15	-0.6
3,674,966	-				+1.8
3,674,966	-		IAI47_17350	0.15	-1.0
3,674,966	-		IAI47_17350	0.15	-1.4
3,674,966	-		IAI47_17350	0.15	+1.6
3,674,966	-		IAI47_17350	0.15	-0.2
3,674,966	-		IAI47_17350	0.15	+2.1
3,674,966	-		IAI47_17350	0.15	+0.2
3,674,995	-		IAI47_17350	0.17	+1.3
3,674,995	-		IAI47_17350	0.17	+0.7