Strain Fitness in Pantoea sp. MT58 around IAI47_12395

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,615,002	-		IAI47_12385	0.85	-0.8
2,615,058	+				+0.6
2,615,095	+				-1.5
2,615,128	+				+3.7
2,615,128	+				+1.3
2,615,128	+				+0.3
2,615,128	+				-0.6
2,615,128	+				-0.5
2,615,128	+				-2.1
2,615,128	+				+2.1
2,615,128	+				+2.7
2,615,128	+				+1.4
2,615,128	+				-0.4
2,615,128	+				+0.1
2,615,129	-				-2.5
2,615,129	-				-0.6
2,615,129	-				-1.9
2,615,129	-				+0.6
2,615,129	-				+1.7
2,615,129	-				+1.0
2,615,209	-				-2.7
2,615,225	+				+1.3
2,615,233	+				-0.7
2,615,233	+				-1.3
2,615,234	-				+0.1
2,615,234	-				+1.1
2,615,252	-				-0.3
2,615,292	+				+0.7
2,615,298	+				+0.1
2,615,298	+				-0.9
2,615,318	+				-1.1
2,615,318	+				-0.5
2,615,372	+				+0.1
2,615,373	-				+1.4
2,615,468	-		IAI47_12390	0.34	-1.1
2,615,482	+		IAI47_12390	0.37	-1.3
2,615,482	+		IAI47_12390	0.37	-0.9
2,615,482	+		IAI47_12390	0.37	-2.2
2,615,482	+		IAI47_12390	0.37	+0.7
2,615,482	+		IAI47_12390	0.37	-0.7
2,615,482	+		IAI47_12390	0.37	-1.6
2,615,482	+		IAI47_12390	0.37	+0.6
2,615,482	+		IAI47_12390	0.37	+0.9
2,615,483	-		IAI47_12390	0.38	-1.1
2,615,483	-		IAI47_12390	0.38	+0.8
2,615,483	-		IAI47_12390	0.38	+0.7
2,615,483	-		IAI47_12390	0.38	-0.6
2,615,483	-		IAI47_12390	0.38	+1.7
2,615,483	-		IAI47_12390	0.38	+1.2
2,615,483	-		IAI47_12390	0.38	+1.0
2,615,487	-		IAI47_12390	0.39	-1.2
2,615,487	-		IAI47_12390	0.39	+1.2
2,615,487	-		IAI47_12390	0.39	+0.7
2,615,535	+		IAI47_12390	0.51	+0.1
2,615,535	+		IAI47_12390	0.51	-1.8
2,615,535	+		IAI47_12390	0.51	-0.3
2,615,535	+		IAI47_12390	0.51	+0.5
2,615,535	+		IAI47_12390	0.51	+0.8
2,615,535	+		IAI47_12390	0.51	-2.0
2,615,536	-		IAI47_12390	0.51	-1.5
2,615,536	-		IAI47_12390	0.51	+0.4
2,615,536	-		IAI47_12390	0.51	-0.6
2,615,536	-		IAI47_12390	0.51	+0.1
2,615,576	+		IAI47_12390	0.62	-1.0
2,615,609	+		IAI47_12390	0.70	-1.5
2,615,646	-		IAI47_12390	0.80	+0.7
2,615,646	-		IAI47_12390	0.80	+0.7
2,615,677	-		IAI47_12390	0.88	-1.5
2,615,723	+				-2.5
2,615,723	+				-2.8
2,615,724	-				+1.7
2,615,750	-				+1.4
2,615,788	+				+2.0
2,615,788	+				-2.9
2,615,794	+				+0.4
2,615,795	-				-0.3
2,615,795	-				-1.4
2,615,795	-				-0.4
2,615,837	+				+0.8
2,615,837	+				+2.5
2,615,837	+				-1.2
2,615,838	-				-2.9
2,615,838	-				+1.2
2,615,849	+				+0.6
2,615,850	-				+4.6
2,615,859	+				+1.4
2,615,860	-				+1.4
2,615,860	-				-0.9
2,615,860	-				-0.2
2,615,869	+				-0.4
2,615,869	+				+0.5
2,615,869	+				+1.0
2,615,869	+				+0.5
2,615,869	+				+0.4
2,615,869	+				+2.3
2,615,869	+				+0.8
2,615,869	+				-0.8
2,615,869	+				+3.1
2,615,869	+				+2.3
2,615,869	+				-0.4
2,615,870	-				-2.2
2,615,870	-				+1.4
2,615,870	-				+0.7
2,615,870	-				+0.9
2,615,870	-				+1.0
2,615,870	-				-0.5
2,615,870	-				-2.7
2,615,870	-				-0.6
2,615,873	+				+0.3
2,615,873	+				+0.5
2,615,874	-				+0.1
2,615,874	-				+0.7
2,615,874	-				+0.4
2,615,874	-				+1.7
2,615,874	-				+0.2
2,615,875	+				+0.9
2,615,875	+				-1.6
2,615,875	+				-0.1
2,615,876	-				-1.2
2,615,890	+				-3.7
2,615,890	+				-0.3
2,615,890	+				+1.2
2,615,890	+				+2.8
2,615,891	-				+1.3
2,615,912	+				-0.5
2,615,967	+				-0.2
2,615,968	-				+1.9
2,615,968	-				+0.5
2,616,036	+				+0.7
2,616,037	-				-2.1
2,616,133	-		IAI47_12395	0.10	-1.0
2,616,141	+		IAI47_12395	0.11	-0.9
2,616,141	+		IAI47_12395	0.11	+2.7
2,616,142	-		IAI47_12395	0.11	+0.3
2,616,185	+		IAI47_12395	0.14	-0.1
2,616,186	-		IAI47_12395	0.14	+1.8
2,616,186	-		IAI47_12395	0.14	+1.5
2,616,189	+		IAI47_12395	0.14	+0.0
2,616,189	+		IAI47_12395	0.14	-1.9
2,616,189	+		IAI47_12395	0.14	+0.9
2,616,189	+		IAI47_12395	0.14	+1.4
2,616,189	+		IAI47_12395	0.14	+1.2
2,616,189	+		IAI47_12395	0.14	-0.5
2,616,190	-		IAI47_12395	0.14	+0.5
2,616,291	+		IAI47_12395	0.22	+1.0
2,616,297	+		IAI47_12395	0.22	-0.2
2,616,297	+		IAI47_12395	0.22	+0.3
2,616,297	+		IAI47_12395	0.22	-2.5
2,616,297	+		IAI47_12395	0.22	-1.5
2,616,298	-		IAI47_12395	0.22	-0.6
2,616,518	+		IAI47_12395	0.38	-0.2
2,616,519	-		IAI47_12395	0.38	+0.8
2,616,519	-		IAI47_12395	0.38	+0.1
2,616,556	+		IAI47_12395	0.41	+1.3
2,616,556	+		IAI47_12395	0.41	-1.3
2,616,596	+		IAI47_12395	0.44	+2.3
2,616,597	-		IAI47_12395	0.44	+0.7
2,616,597	-		IAI47_12395	0.44	-0.3
2,616,631	+		IAI47_12395	0.46	+2.2
2,616,631	+		IAI47_12395	0.46	+0.2
2,616,631	+		IAI47_12395	0.46	-1.2
2,616,632	-		IAI47_12395	0.46	+2.1
2,616,701	+		IAI47_12395	0.51	-1.9
2,616,724	-		IAI47_12395	0.53	-1.3
2,616,762	+		IAI47_12395	0.56	+0.2
2,616,762	+		IAI47_12395	0.56	+1.3
2,616,762	+		IAI47_12395	0.56	-1.1
2,616,762	+		IAI47_12395	0.56	+0.2
2,616,762	+		IAI47_12395	0.56	+0.6
2,616,763	-		IAI47_12395	0.56	+0.4
2,616,789	-		IAI47_12395	0.58	-0.5
2,616,868	-		IAI47_12395	0.63	-1.5
2,616,868	-		IAI47_12395	0.63	+1.9
2,616,933	-		IAI47_12395	0.68	+1.7
2,616,959	-		IAI47_12395	0.70	+0.7
2,616,959	-		IAI47_12395	0.70	-0.6
2,616,959	-		IAI47_12395	0.70	-0.5
2,616,965	-		IAI47_12395	0.70	+0.9
2,617,002	-		IAI47_12395	0.73	+1.0
2,617,002	-		IAI47_12395	0.73	-0.1
2,617,002	-		IAI47_12395	0.73	+1.9
2,617,030	-		IAI47_12395	0.75	-0.4
2,617,166	-		IAI47_12395	0.85	-0.0
2,617,209	+		IAI47_12395	0.88	+0.7
2,617,209	+		IAI47_12395	0.88	+0.9
2,617,209	+		IAI47_12395	0.88	+2.5
2,617,210	-		IAI47_12395	0.88	+0.5
2,617,210	-		IAI47_12395	0.88	+1.7
2,617,355	+				-0.2
2,617,355	+				-0.5
2,617,355	+				-1.0
2,617,356	-				-0.6
2,617,356	-				-0.6
2,617,356	-				+2.8
2,617,356	-				+1.0
2,617,361	+				-3.1
2,617,455	+				-2.0
2,617,455	+				-0.1
2,617,455	+				-0.8
2,617,455	+				-1.5
2,617,455	+				-2.4
2,617,455	+				-0.2
2,617,455	+				+1.0
2,617,471	-				-0.5
2,617,488	+		IAI47_12400	0.10	-0.9
2,617,488	+		IAI47_12400	0.10	-1.4
2,617,503	+		IAI47_12400	0.12	-0.1
2,617,536	+		IAI47_12400	0.15	-2.2
2,617,536	+		IAI47_12400	0.15	+2.8
2,617,570	-		IAI47_12400	0.18	-0.9
2,617,587	+		IAI47_12400	0.19	+0.2
2,617,588	-		IAI47_12400	0.19	-0.9
2,617,716	+		IAI47_12400	0.31	-2.0
2,617,730	+		IAI47_12400	0.32	-2.4
2,617,730	+		IAI47_12400	0.32	+0.5
2,617,731	-		IAI47_12400	0.33	+1.5
2,617,731	-		IAI47_12400	0.33	-0.7
2,617,731	-		IAI47_12400	0.33	+1.5
2,617,731	-		IAI47_12400	0.33	-1.8
2,617,975	+		IAI47_12400	0.55	-1.1
2,617,975	+		IAI47_12400	0.55	-1.8
2,617,976	-		IAI47_12400	0.55	-0.1
2,618,034	+		IAI47_12400	0.60	-0.2
2,618,034	+		IAI47_12400	0.60	-1.8
2,618,034	+		IAI47_12400	0.60	+0.6
2,618,034	+		IAI47_12400	0.60	-0.6
2,618,035	-		IAI47_12400	0.60	-2.0
2,618,035	-		IAI47_12400	0.60	-0.2
2,618,070	+		IAI47_12400	0.63	-1.1
2,618,071	-		IAI47_12400	0.64	+0.1
2,618,071	-		IAI47_12400	0.64	-1.8
2,618,177	+		IAI47_12400	0.73	-1.4
2,618,178	-		IAI47_12400	0.73	+1.7
2,618,178	-		IAI47_12400	0.73	+1.0
2,618,243	-		IAI47_12400	0.79	-2.8
2,618,255	+		IAI47_12400	0.80	-1.3
2,618,255	+		IAI47_12400	0.80	-0.3
2,618,255	+		IAI47_12400	0.80	-0.9
2,618,255	+		IAI47_12400	0.80	+0.6
2,618,256	-		IAI47_12400	0.80	-1.9
2,618,256	-		IAI47_12400	0.80	+1.0
2,618,256	-		IAI47_12400	0.80	+0.5
2,618,278	-		IAI47_12400	0.82	-0.9
2,618,300	+		IAI47_12400	0.84	-1.9
2,618,300	+		IAI47_12400	0.84	+1.7
2,618,300	+		IAI47_12400	0.84	-2.8
2,618,300	+		IAI47_12400	0.84	+1.0
2,618,300	+		IAI47_12400	0.84	-0.1
2,618,300	+		IAI47_12400	0.84	+0.5
2,618,300	+		IAI47_12400	0.84	-2.0
2,618,301	-		IAI47_12400	0.85	-0.3
2,618,301	-		IAI47_12400	0.85	-1.9
2,618,301	-		IAI47_12400	0.85	-0.1
2,618,301	-		IAI47_12400	0.85	-2.4
2,618,321	-		IAI47_12400	0.86	+0.4
2,618,321	-		IAI47_12400	0.86	+0.6
2,618,321	-		IAI47_12400	0.86	-0.5
2,618,321	-		IAI47_12400	0.86	-2.1
2,618,332	-		IAI47_12400	0.87	-0.1
2,618,354	+		IAI47_12400	0.89	+1.7
2,618,354	+		IAI47_12400	0.89	-0.6
2,618,354	+		IAI47_12400	0.89	-2.8
2,618,355	-		IAI47_12400	0.89	+0.9
2,618,355	-		IAI47_12400	0.89	-1.5
2,618,355	-		IAI47_12400	0.89	-0.6
2,618,355	-		IAI47_12400	0.89	-0.6
2,618,355	-		IAI47_12400	0.89	-0.7
2,618,355	-		IAI47_12400	0.89	-0.3
2,618,369	-				-1.1