Strain Fitness in Pantoea sp. MT58 around IAI47_07865

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,666,371	-				+0.8
1,666,757	-				+4.1
1,666,757	-				+0.3
1,666,757	-				-1.0
1,666,757	-				-2.0
1,666,779	-				+0.2
1,667,051	+				-0.7
1,667,051	+				-0.2
1,667,051	+				+0.5
1,667,051	+				-1.5
1,667,051	+				-2.5
1,667,087	+				-2.2
1,667,087	+				-0.0
1,667,151	+				-0.4
1,667,189	+				+0.6
1,667,189	+				-0.0
1,667,190	-				+0.2
1,667,190	-				-1.6
1,667,210	+				-1.8
1,667,210	+				-1.0
1,667,211	-				-1.5
1,667,211	-				-1.0
1,667,211	-				+0.6
1,667,211	-				+0.2
1,667,211	-				-3.1
1,667,211	-				+0.6
1,667,283	-				+2.8
1,667,331	+				-0.5
1,667,331	+				-0.8
1,667,331	+				-0.7
1,667,331	+				+0.0
1,667,332	-				+0.9
1,667,332	-				-1.3
1,667,332	-				+2.0
1,667,332	-				-1.2
1,667,332	-				+0.6
1,667,402	+				+1.6
1,667,403	-				-0.8
1,667,403	-				-0.2
1,667,430	+		IAI47_07865	0.10	-0.2
1,667,430	+		IAI47_07865	0.10	+0.6
1,667,430	+		IAI47_07865	0.10	+1.1
1,667,430	+		IAI47_07865	0.10	+0.5
1,667,526	+		IAI47_07865	0.17	+0.8
1,667,581	+		IAI47_07865	0.21	-2.4
1,667,581	+		IAI47_07865	0.21	-1.0
1,667,581	+		IAI47_07865	0.21	-1.0
1,667,581	+		IAI47_07865	0.21	+0.4
1,667,581	+		IAI47_07865	0.21	-1.2
1,667,581	+		IAI47_07865	0.21	+1.9
1,667,582	-		IAI47_07865	0.21	+0.6
1,667,582	-		IAI47_07865	0.21	+0.2
1,667,582	-		IAI47_07865	0.21	-0.9
1,667,582	-		IAI47_07865	0.21	+0.5
1,667,582	-		IAI47_07865	0.21	+1.6
1,667,582	-		IAI47_07865	0.21	-3.1
1,667,582	-		IAI47_07865	0.21	+0.3
1,667,623	-		IAI47_07865	0.24	+1.9
1,667,623	-		IAI47_07865	0.24	+0.7
1,667,655	+		IAI47_07865	0.26	-1.4
1,667,655	+		IAI47_07865	0.26	+0.5
1,667,656	-		IAI47_07865	0.26	+0.7
1,667,656	-		IAI47_07865	0.26	+1.7
1,667,656	-		IAI47_07865	0.26	-0.9
1,667,658	+		IAI47_07865	0.26	+0.1
1,667,658	+		IAI47_07865	0.26	-0.4
1,667,659	-		IAI47_07865	0.26	-0.7
1,667,659	-		IAI47_07865	0.26	-0.9
1,667,709	+		IAI47_07865	0.29	+0.4
1,667,709	+		IAI47_07865	0.29	-2.4
1,667,709	+		IAI47_07865	0.29	+0.5
1,667,709	+		IAI47_07865	0.29	-0.7
1,667,709	+		IAI47_07865	0.29	+0.6
1,667,710	-		IAI47_07865	0.29	+2.8
1,667,765	+		IAI47_07865	0.33	+0.6
1,667,765	+		IAI47_07865	0.33	+0.6
1,667,765	+		IAI47_07865	0.33	+0.1
1,667,783	+		IAI47_07865	0.35	-1.2
1,667,783	+		IAI47_07865	0.35	-1.7
1,667,784	-		IAI47_07865	0.35	-0.4
1,667,784	-		IAI47_07865	0.35	+0.4
1,667,784	-		IAI47_07865	0.35	+1.1
1,667,880	+		IAI47_07865	0.41	-1.7
1,667,916	+		IAI47_07865	0.44	-1.7
1,667,916	+		IAI47_07865	0.44	+0.8
1,667,916	+		IAI47_07865	0.44	-0.4
1,667,917	-		IAI47_07865	0.44	+0.0
1,667,917	-		IAI47_07865	0.44	+0.3
1,667,917	-		IAI47_07865	0.44	+1.0
1,667,920	-		IAI47_07865	0.44	-1.2
1,668,025	+		IAI47_07865	0.51	-1.8
1,668,025	+		IAI47_07865	0.51	-0.0
1,668,025	+		IAI47_07865	0.51	+0.8
1,668,025	+		IAI47_07865	0.51	-0.8
1,668,025	+		IAI47_07865	0.51	+2.6
1,668,025	+		IAI47_07865	0.51	-0.1
1,668,025	+		IAI47_07865	0.51	-0.2
1,668,025	+		IAI47_07865	0.51	+2.2
1,668,025	+		IAI47_07865	0.51	-1.7
1,668,026	-		IAI47_07865	0.51	-0.7
1,668,026	-		IAI47_07865	0.51	+1.0
1,668,026	-		IAI47_07865	0.51	-1.4
1,668,026	-		IAI47_07865	0.51	-1.1
1,668,026	-		IAI47_07865	0.51	-0.0
1,668,054	-		IAI47_07865	0.53	-1.4
1,668,061	-		IAI47_07865	0.54	-1.1
1,668,073	+		IAI47_07865	0.54	-0.3
1,668,073	+		IAI47_07865	0.54	+1.4
1,668,073	+		IAI47_07865	0.54	+0.6
1,668,074	-		IAI47_07865	0.55	-1.1
1,668,111	-		IAI47_07865	0.57	-0.5
1,668,111	-		IAI47_07865	0.57	+0.2
1,668,111	-		IAI47_07865	0.57	-1.0
1,668,111	-		IAI47_07865	0.57	+0.5
1,668,119	+		IAI47_07865	0.58	-1.8
1,668,119	+		IAI47_07865	0.58	+2.2
1,668,120	-		IAI47_07865	0.58	+1.9
1,668,120	-		IAI47_07865	0.58	-0.8
1,668,120	-		IAI47_07865	0.58	+0.3
1,668,120	-		IAI47_07865	0.58	+3.0
1,668,123	+		IAI47_07865	0.58	+0.3
1,668,123	+		IAI47_07865	0.58	-1.7
1,668,123	+		IAI47_07865	0.58	-1.0
1,668,123	+		IAI47_07865	0.58	+1.3
1,668,124	-		IAI47_07865	0.58	-1.1
1,668,170	+		IAI47_07865	0.61	+0.4
1,668,171	-		IAI47_07865	0.61	+0.8
1,668,171	-		IAI47_07865	0.61	-0.3
1,668,362	+		IAI47_07865	0.74	+0.5
1,668,362	+		IAI47_07865	0.74	+2.6
1,668,362	+		IAI47_07865	0.74	+0.8
1,668,362	+		IAI47_07865	0.74	-1.1
1,668,362	+		IAI47_07865	0.74	-0.5
1,668,362	+		IAI47_07865	0.74	-1.5
1,668,362	+		IAI47_07865	0.74	+1.6
1,668,363	-		IAI47_07865	0.74	+1.5
1,668,363	-		IAI47_07865	0.74	-0.1
1,668,363	-		IAI47_07865	0.74	-1.1
1,668,363	-		IAI47_07865	0.74	+0.8
1,668,363	-		IAI47_07865	0.74	-1.2
1,668,413	+		IAI47_07865	0.78	-0.5
1,668,413	+		IAI47_07865	0.78	-0.3
1,668,414	-		IAI47_07865	0.78	+1.1
1,668,447	+		IAI47_07865	0.80	-1.5
1,668,447	+		IAI47_07865	0.80	+0.6
1,668,447	+		IAI47_07865	0.80	+0.9
1,668,447	+		IAI47_07865	0.80	+0.9
1,668,447	+		IAI47_07865	0.80	-0.5
1,668,448	-		IAI47_07865	0.80	+1.4
1,668,448	-		IAI47_07865	0.80	-0.1
1,668,448	-		IAI47_07865	0.80	-2.0
1,668,448	-		IAI47_07865	0.80	+1.5
1,668,449	+		IAI47_07865	0.80	+1.0
1,668,449	+		IAI47_07865	0.80	+2.2
1,668,449	+		IAI47_07865	0.80	+0.1
1,668,449	+		IAI47_07865	0.80	-1.2
1,668,449	+		IAI47_07865	0.80	+1.0
1,668,449	+		IAI47_07865	0.80	-0.7
1,668,449	+		IAI47_07865	0.80	+1.6
1,668,450	-		IAI47_07865	0.80	+0.1
1,668,450	-		IAI47_07865	0.80	-1.1
1,668,450	-		IAI47_07865	0.80	-1.2
1,668,450	-		IAI47_07865	0.80	+0.0
1,668,488	+		IAI47_07865	0.83	+1.5
1,668,488	+		IAI47_07865	0.83	-1.4
1,668,489	-		IAI47_07865	0.83	-1.7
1,668,505	-		IAI47_07865	0.84	+1.9
1,668,640	-				+0.3
1,668,674	+				+1.2
1,668,675	-				-0.2
1,668,675	-				-1.2
1,668,675	-				-1.0
1,668,864	-				+1.6
1,668,893	+				-0.2
1,668,905	+				-0.2
1,668,909	-				+0.5
1,668,909	-				+0.5
1,668,934	+				+0.0
1,668,934	+				+4.7
1,668,935	-				+1.3
1,668,935	-				+0.0
1,668,935	-				+2.5
1,668,974	+				-2.4
1,668,974	+				+0.9
1,668,974	+				+0.2
1,668,974	+				+3.4
1,668,974	+				+0.3
1,668,974	+				-1.4
1,668,975	-				+0.0
1,668,975	-				-0.8
1,668,975	-				-1.4
1,668,975	-				-1.0
1,668,994	+				-1.5
1,668,994	+				-1.1
1,668,994	+				-0.2
1,668,995	-				+0.6
1,668,995	-				-0.9
1,668,995	-				+1.9
1,668,995	-				+1.8
1,668,999	+				+1.0
1,668,999	+				+2.5
1,669,000	-				+1.3
1,669,000	-				-1.2
1,669,009	+				-0.9
1,669,010	-				-1.0
1,669,013	+				-1.0
1,669,014	-				+0.1
1,669,115	+				+0.5
1,669,115	+				-0.1
1,669,116	-				+0.1
1,669,116	-				+0.8
1,669,130	+				+1.8
1,669,131	-				+0.3
1,669,131	-				-1.8
1,669,139	+				+0.1
1,669,139	+				-0.7
1,669,139	+				+0.0
1,669,139	+				-2.3
1,669,139	+				+2.2
1,669,139	+				-2.1
1,669,139	+				-1.1
1,669,139	+				+0.7
1,669,140	-				-0.0
1,669,140	-				-0.6
1,669,140	-				-0.2
1,669,140	-				-1.0
1,669,140	-				-1.4
1,669,140	-				-2.3
1,669,149	-				+0.6
1,669,149	-				+0.3
1,669,193	+				-3.2
1,669,193	+				-1.1
1,669,194	-				-0.0
1,669,194	-				+0.3
1,669,229	-				+0.8
1,669,247	-				+1.2
1,669,259	-				-1.0
1,669,272	-				+0.9
1,669,290	+				+0.5
1,669,290	+				-2.0
1,669,290	+				+0.6
1,669,290	+				+0.1
1,669,290	+				+1.1
1,669,291	-				+1.2
1,669,291	-				+0.8
1,669,291	-				-1.0
1,669,291	-				+1.0
1,669,291	-				+0.9
1,669,360	-		IAI47_07870	0.11	+0.6
1,669,518	+		IAI47_07870	0.22	+1.5
1,669,519	-		IAI47_07870	0.23	+0.6
1,669,519	-		IAI47_07870	0.23	+1.2
1,669,529	+		IAI47_07870	0.23	-1.7
1,669,529	+		IAI47_07870	0.23	+1.0
1,669,529	+		IAI47_07870	0.23	+5.0
1,669,529	+		IAI47_07870	0.23	-2.5
1,669,529	+		IAI47_07870	0.23	-1.0
1,669,530	-		IAI47_07870	0.23	-0.4
1,669,530	-		IAI47_07870	0.23	-2.3
1,669,530	-		IAI47_07870	0.23	+0.2
1,669,530	-		IAI47_07870	0.23	+0.8
1,669,530	-		IAI47_07870	0.23	-0.0
1,669,530	-		IAI47_07870	0.23	+0.8
1,669,633	+		IAI47_07870	0.31	-1.2
1,669,633	+		IAI47_07870	0.31	-1.7
1,669,633	+		IAI47_07870	0.31	-0.4
1,669,633	+		IAI47_07870	0.31	+1.6
1,669,633	+		IAI47_07870	0.31	-1.0
1,669,658	-		IAI47_07870	0.32	+1.1