Strain Fitness in Pantoea sp. MT58 around IAI47_06660

Experiment: Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,385,926	+				+1.9
1,385,927	-				+0.9
1,385,927	-				+0.2
1,385,927	-				+0.8
1,385,941	+				+1.2
1,385,941	+				+1.6
1,385,941	+				+2.0
1,385,941	+				+1.3
1,385,941	+				+0.3
1,385,942	-				+2.4
1,385,942	-				+1.6
1,385,942	-				+2.0
1,385,944	-				+4.8
1,385,944	-				+2.8
1,386,024	+		IAI47_06655	0.15	+2.3
1,386,024	+		IAI47_06655	0.15	+1.7
1,386,024	+		IAI47_06655	0.15	+2.4
1,386,024	+		IAI47_06655	0.15	+1.7
1,386,159	+		IAI47_06655	0.29	+1.7
1,386,162	+		IAI47_06655	0.29	+2.0
1,386,163	-		IAI47_06655	0.29	+1.9
1,386,250	-		IAI47_06655	0.39	+2.7
1,386,360	+		IAI47_06655	0.50	-1.5
1,386,361	-		IAI47_06655	0.50	+1.0
1,386,606	+		IAI47_06655	0.77	+2.2
1,386,607	-		IAI47_06655	0.77	+3.5
1,386,673	+		IAI47_06655	0.84	+2.1
1,386,774	+				+3.1
1,386,774	+				+0.2
1,386,774	+				-0.9
1,386,775	-				+0.2
1,386,809	+				-0.9
1,386,809	+				-0.5
1,386,809	+				-0.7
1,386,809	+				-0.0
1,386,810	-				-2.9
1,386,810	-				+0.3
1,386,810	-				-2.3
1,386,841	-				+0.9
1,386,841	-				-0.7
1,386,859	+				-2.2
1,386,860	-				-1.0
1,386,868	+				+0.9
1,386,868	+				-0.7
1,386,869	-				+0.7
1,386,869	-				+0.5
1,386,869	-				+0.7
1,386,890	+				-0.5
1,386,890	+				-0.9
1,386,890	+				+1.8
1,386,890	+				-0.7
1,386,890	+				-0.2
1,386,890	+				+0.2
1,386,890	+				-0.7
1,386,890	+				+0.2
1,386,891	-				-0.3
1,386,891	-				-0.9
1,386,891	-				-0.5
1,386,891	-				-1.5
1,386,891	-				+1.1
1,386,891	-				+1.5
1,386,891	-				-0.7
1,386,891	-				+0.5
1,386,891	-				-0.2
1,386,892	+				-0.9
1,386,892	+				+1.7
1,386,892	+				-2.6
1,386,892	+				-1.3
1,386,892	+				+0.7
1,386,893	-				+1.1
1,386,893	-				+0.1
1,386,893	-				-0.5
1,386,985	+				-2.3
1,387,040	-		IAI47_06660	0.12	-0.8
1,387,097	-		IAI47_06660	0.15	-0.3
1,387,225	+		IAI47_06660	0.22	+0.1
1,387,225	+		IAI47_06660	0.22	+0.3
1,387,226	-		IAI47_06660	0.22	+1.2
1,387,226	-		IAI47_06660	0.22	-1.1
1,387,241	-		IAI47_06660	0.23	+0.3
1,387,241	-		IAI47_06660	0.23	+1.3
1,387,241	-		IAI47_06660	0.23	-0.3
1,387,406	+		IAI47_06660	0.33	-0.2
1,387,406	+		IAI47_06660	0.33	+1.1
1,387,406	+		IAI47_06660	0.33	-1.5
1,387,457	-		IAI47_06660	0.36	+1.2
1,387,481	+		IAI47_06660	0.37	-0.4
1,387,481	+		IAI47_06660	0.37	-0.8
1,387,481	+		IAI47_06660	0.37	+1.7
1,387,482	-		IAI47_06660	0.37	-2.3
1,387,482	-		IAI47_06660	0.37	-0.8
1,387,483	+		IAI47_06660	0.37	+1.2
1,387,483	+		IAI47_06660	0.37	-1.8
1,387,483	+		IAI47_06660	0.37	+0.1
1,387,483	+		IAI47_06660	0.37	+0.9
1,387,483	+		IAI47_06660	0.37	-0.9
1,387,483	+		IAI47_06660	0.37	-1.6
1,387,483	+		IAI47_06660	0.37	+0.1
1,387,483	+		IAI47_06660	0.37	+1.1
1,387,483	+		IAI47_06660	0.37	+0.2
1,387,483	+		IAI47_06660	0.37	-0.8
1,387,483	+		IAI47_06660	0.37	+2.9
1,387,483	+		IAI47_06660	0.37	-1.3
1,387,483	+		IAI47_06660	0.37	-0.1
1,387,483	+		IAI47_06660	0.37	+2.1
1,387,484	-		IAI47_06660	0.37	+0.8
1,387,484	-		IAI47_06660	0.37	-1.7
1,387,484	-		IAI47_06660	0.37	-1.1
1,387,484	-		IAI47_06660	0.37	-0.8
1,387,484	-		IAI47_06660	0.37	-1.1
1,387,484	-		IAI47_06660	0.37	+0.3
1,387,484	-		IAI47_06660	0.37	-1.1
1,387,484	-		IAI47_06660	0.37	-0.0
1,387,484	-		IAI47_06660	0.37	-1.9
1,387,484	-		IAI47_06660	0.37	+1.8
1,387,510	+		IAI47_06660	0.39	+0.1
1,387,510	+		IAI47_06660	0.39	+0.4
1,387,511	-		IAI47_06660	0.39	+0.8
1,387,511	-		IAI47_06660	0.39	+0.1
1,387,511	-		IAI47_06660	0.39	-2.5
1,387,511	-		IAI47_06660	0.39	+1.1
1,387,574	+		IAI47_06660	0.43	-2.1
1,387,574	+		IAI47_06660	0.43	+0.4
1,387,574	+		IAI47_06660	0.43	-1.0
1,387,574	+		IAI47_06660	0.43	-2.3
1,387,575	-		IAI47_06660	0.43	+2.1
1,387,575	-		IAI47_06660	0.43	+1.0
1,387,575	-		IAI47_06660	0.43	+0.1
1,387,575	-		IAI47_06660	0.43	+0.1
1,387,575	-		IAI47_06660	0.43	-2.4
1,387,634	-		IAI47_06660	0.46	-1.3
1,387,634	-		IAI47_06660	0.46	+0.2
1,387,645	+		IAI47_06660	0.47	+0.2
1,387,646	-		IAI47_06660	0.47	-2.2
1,387,714	-		IAI47_06660	0.51	-0.9
1,387,714	-		IAI47_06660	0.51	-1.8
1,387,733	-		IAI47_06660	0.52	-1.3
1,387,733	-		IAI47_06660	0.52	-1.7
1,387,786	+		IAI47_06660	0.55	-0.3
1,387,787	-		IAI47_06660	0.55	-0.7
1,387,818	+		IAI47_06660	0.57	+1.0
1,387,818	+		IAI47_06660	0.57	+2.0
1,387,818	+		IAI47_06660	0.57	+1.2
1,387,825	+		IAI47_06660	0.57	-1.5
1,387,829	-		IAI47_06660	0.58	+1.2
1,387,841	-		IAI47_06660	0.58	+0.2
1,387,894	+		IAI47_06660	0.61	-1.9
1,387,894	+		IAI47_06660	0.61	-1.4
1,387,894	+		IAI47_06660	0.61	-0.3
1,387,894	+		IAI47_06660	0.61	-0.1
1,387,894	+		IAI47_06660	0.61	-2.2
1,387,895	-		IAI47_06660	0.61	+1.7
1,387,921	+		IAI47_06660	0.63	+1.9
1,387,922	-		IAI47_06660	0.63	-0.6
1,387,964	+		IAI47_06660	0.65	+0.3
1,387,964	+		IAI47_06660	0.65	-2.2
1,387,964	+		IAI47_06660	0.65	-0.4
1,387,964	+		IAI47_06660	0.65	-0.3
1,387,964	+		IAI47_06660	0.65	+1.7
1,387,964	+		IAI47_06660	0.65	-0.9
1,387,964	+		IAI47_06660	0.65	-0.6
1,387,964	+		IAI47_06660	0.65	+0.8
1,387,964	+		IAI47_06660	0.65	-1.3
1,387,964	+		IAI47_06660	0.65	-2.0
1,387,964	+		IAI47_06660	0.65	-0.3
1,387,965	-		IAI47_06660	0.66	+1.9
1,387,965	-		IAI47_06660	0.66	-1.8
1,387,965	-		IAI47_06660	0.66	-1.3
1,387,965	-		IAI47_06660	0.66	+0.7
1,387,965	-		IAI47_06660	0.66	+1.3
1,387,965	-		IAI47_06660	0.66	+1.7
1,387,965	-		IAI47_06660	0.66	-1.7
1,388,020	+		IAI47_06660	0.69	-0.9
1,388,020	+		IAI47_06660	0.69	+0.5
1,388,111	+		IAI47_06660	0.74	+2.4
1,388,111	+		IAI47_06660	0.74	-0.6
1,388,112	-		IAI47_06660	0.74	-1.5
1,388,131	-		IAI47_06660	0.75	-1.4
1,388,147	+		IAI47_06660	0.76	+0.9
1,388,147	+		IAI47_06660	0.76	+0.3
1,388,147	+		IAI47_06660	0.76	-0.7
1,388,147	+		IAI47_06660	0.76	-0.3
1,388,147	+		IAI47_06660	0.76	-0.6
1,388,147	+		IAI47_06660	0.76	-0.8
1,388,147	+		IAI47_06660	0.76	-1.5
1,388,147	+		IAI47_06660	0.76	-0.1
1,388,148	-		IAI47_06660	0.76	-0.7
1,388,148	-		IAI47_06660	0.76	+0.7
1,388,148	-		IAI47_06660	0.76	-1.1
1,388,148	-		IAI47_06660	0.76	-1.0
1,388,148	-		IAI47_06660	0.76	+1.5
1,388,148	-		IAI47_06660	0.76	+0.7
1,388,148	-		IAI47_06660	0.76	+0.6
1,388,148	-		IAI47_06660	0.76	-1.9
1,388,148	-		IAI47_06660	0.76	-3.1
1,388,148	-		IAI47_06660	0.76	+1.7
1,388,209	+		IAI47_06660	0.80	+0.3
1,388,228	-		IAI47_06660	0.81	-1.0
1,388,257	+		IAI47_06660	0.83	-1.7
1,388,257	+		IAI47_06660	0.83	+0.7
1,388,257	+		IAI47_06660	0.83	+0.8
1,388,258	-		IAI47_06660	0.83	+0.6
1,388,287	+		IAI47_06660	0.84	-0.8
1,388,287	+		IAI47_06660	0.84	-0.9
1,388,288	-		IAI47_06660	0.84	+1.7
1,388,347	+		IAI47_06660	0.88	-0.6
1,388,348	-		IAI47_06660	0.88	-1.1
1,388,348	-		IAI47_06660	0.88	-1.1
1,388,427	+				+1.7
1,388,427	+				-2.0
1,388,428	-				-2.5
1,388,428	-				-0.7
1,388,450	-				+1.1
1,388,465	+				+0.7
1,388,488	+				-0.3
1,388,489	-				+0.8
1,388,511	-				-0.3
1,388,517	+				+1.8
1,388,569	+				-2.7
1,388,585	+				-0.8
1,388,585	+				-2.0
1,388,585	+				+0.4
1,388,586	-				-0.3
1,388,586	-				-1.0
1,388,586	-				-1.1
1,388,588	+				-1.1
1,388,588	+				+0.5
1,388,589	-				+1.7
1,388,620	+				-0.1
1,388,620	+				-1.9
1,388,620	+				+0.3
1,388,664	+				+0.4
1,388,664	+				-3.3
1,388,665	-				-0.7
1,388,665	-				-0.7
1,388,776	+				+0.6
1,388,779	+				+0.5
1,388,779	+				-1.0
1,388,779	+				+1.0
1,388,780	-				-1.1
1,388,780	-				-1.6
1,388,780	-				+0.3
1,388,780	-				+0.9
1,388,792	+				+0.2
1,388,793	-				-2.7
1,388,800	+				+0.1
1,388,800	+				+0.8
1,388,800	+				-1.0
1,388,800	+				-0.0
1,388,801	-				+0.8
1,388,801	-				+1.7
1,388,833	+		IAI47_06665	0.13	-0.7
1,388,833	+		IAI47_06665	0.13	+1.9
1,388,834	-		IAI47_06665	0.13	-0.3
1,388,834	-		IAI47_06665	0.13	+2.2
1,388,915	-		IAI47_06665	0.23	+0.1
1,388,915	-		IAI47_06665	0.23	+0.4
1,388,915	-		IAI47_06665	0.23	+1.9
1,388,934	+		IAI47_06665	0.25	-0.7
1,388,934	+		IAI47_06665	0.25	-1.4
1,388,934	+		IAI47_06665	0.25	-0.3
1,388,935	-		IAI47_06665	0.25	+0.8
1,388,935	-		IAI47_06665	0.25	+1.1
1,388,935	-		IAI47_06665	0.25	-0.4
1,388,935	-		IAI47_06665	0.25	-0.2
1,389,028	+		IAI47_06665	0.36	+0.3
1,389,028	+		IAI47_06665	0.36	+1.7
1,389,028	+		IAI47_06665	0.36	-0.1
1,389,029	-		IAI47_06665	0.37	-2.1
1,389,055	+		IAI47_06665	0.40	+0.3
1,389,056	-		IAI47_06665	0.40	-0.6
1,389,056	-		IAI47_06665	0.40	+2.0
1,389,056	-		IAI47_06665	0.40	-0.3
1,389,073	+		IAI47_06665	0.42	+0.8
1,389,073	+		IAI47_06665	0.42	-2.9
1,389,074	-		IAI47_06665	0.42	-0.9
1,389,074	-		IAI47_06665	0.42	+0.5
1,389,074	-		IAI47_06665	0.42	+2.7
1,389,074	-		IAI47_06665	0.42	-0.7
1,389,109	+		IAI47_06665	0.46	+0.3
1,389,127	+		IAI47_06665	0.48	+0.3
1,389,128	-		IAI47_06665	0.48	+0.3
1,389,281	+		IAI47_06665	0.66	-1.1
1,389,282	-		IAI47_06665	0.66	-0.8
1,389,282	-		IAI47_06665	0.66	+0.5
1,389,282	-		IAI47_06665	0.66	-0.7
1,389,292	+		IAI47_06665	0.68	-1.8
1,389,292	+		IAI47_06665	0.68	+3.4
1,389,293	-		IAI47_06665	0.68	-0.7
1,389,344	-		IAI47_06665	0.74	-0.8
1,389,391	-		IAI47_06665	0.79	-0.2
1,389,391	-		IAI47_06665	0.79	-3.1
1,389,391	-		IAI47_06665	0.79	-3.5
1,389,391	-		IAI47_06665	0.79	-0.3
1,389,470	-		IAI47_06665	0.89	-1.1
1,389,494	+				-0.6
1,389,495	-				+1.4
1,389,495	-				+2.7
1,389,495	-				+0.2
1,389,495	-				+0.1