Experiment: With vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01280 and HSERO_RS01285 are separated by 41 nucleotides HSERO_RS01285 and HSERO_RS01290 are separated by 102 nucleotides HSERO_RS01290 and HSERO_RS01295 are separated by 237 nucleotides
HSERO_RS01280: HSERO_RS01280 - methyl-accepting chemotaxis protein, at 270,447 to 272,240
_RS01280
HSERO_RS01285: HSERO_RS01285 - diguanylate cyclase, at 272,282 to 273,436
_RS01285
HSERO_RS01290: HSERO_RS01290 - hypothetical protein, at 273,539 to 273,724
_RS01290
HSERO_RS01295: HSERO_RS01295 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 273,962 to 275,932
_RS01295
Position (kb) 272
273
274 Strain fitness (log2 ratio) -2
-1
0
1
2 at 271.352 kb on - strand, within HSERO_RS01280 at 271.585 kb on + strand, within HSERO_RS01280 at 271.881 kb on + strand, within HSERO_RS01280 at 271.883 kb on - strand, within HSERO_RS01280 at 272.225 kb on + strand at 272.225 kb on + strand at 272.265 kb on + strand at 272.334 kb on + strand at 272.391 kb on + strand at 272.399 kb on - strand, within HSERO_RS01285 at 272.474 kb on + strand, within HSERO_RS01285 at 272.641 kb on + strand, within HSERO_RS01285 at 272.696 kb on + strand, within HSERO_RS01285 at 272.735 kb on - strand, within HSERO_RS01285 at 272.987 kb on + strand, within HSERO_RS01285 at 272.995 kb on - strand, within HSERO_RS01285 at 273.000 kb on + strand, within HSERO_RS01285 at 273.107 kb on - strand, within HSERO_RS01285 at 273.207 kb on - strand, within HSERO_RS01285 at 273.286 kb on + strand, within HSERO_RS01285 at 273.406 kb on + strand at 273.407 kb on + strand at 273.451 kb on + strand at 273.451 kb on + strand at 273.451 kb on + strand at 273.459 kb on - strand at 273.485 kb on - strand at 273.515 kb on - strand at 273.608 kb on - strand, within HSERO_RS01290 at 273.682 kb on + strand, within HSERO_RS01290 at 273.682 kb on - strand, within HSERO_RS01290 at 273.732 kb on - strand at 273.950 kb on + strand at 273.950 kb on - strand at 274.027 kb on + strand at 274.027 kb on + strand at 274.091 kb on - strand at 274.123 kb on + strand at 274.123 kb on + strand at 274.123 kb on + strand at 274.131 kb on - strand at 274.242 kb on + strand, within HSERO_RS01295 at 274.304 kb on + strand, within HSERO_RS01295 at 274.392 kb on + strand, within HSERO_RS01295
Per-strain Table
Position Strand Gene LocusTag Fraction With vitamins t2 remove 271,352 - HSERO_RS01280 0.50 -0.9 271,585 + HSERO_RS01280 0.63 -0.1 271,881 + HSERO_RS01280 0.80 +2.1 271,883 - HSERO_RS01280 0.80 -0.1 272,225 + -0.6 272,225 + -2.5 272,265 + +0.7 272,334 + +0.4 272,391 + +0.3 272,399 - HSERO_RS01285 0.10 -0.7 272,474 + HSERO_RS01285 0.17 -0.3 272,641 + HSERO_RS01285 0.31 -0.1 272,696 + HSERO_RS01285 0.36 -0.5 272,735 - HSERO_RS01285 0.39 +1.7 272,987 + HSERO_RS01285 0.61 +0.5 272,995 - HSERO_RS01285 0.62 -0.4 273,000 + HSERO_RS01285 0.62 -1.0 273,107 - HSERO_RS01285 0.71 -0.2 273,207 - HSERO_RS01285 0.80 +1.1 273,286 + HSERO_RS01285 0.87 +0.6 273,406 + -0.3 273,407 + +1.9 273,451 + -0.4 273,451 + +0.1 273,451 + -0.9 273,459 - +0.7 273,485 - +0.3 273,515 - -0.0 273,608 - HSERO_RS01290 0.37 +0.5 273,682 + HSERO_RS01290 0.77 -0.4 273,682 - HSERO_RS01290 0.77 -1.9 273,732 - -0.5 273,950 + +0.3 273,950 - +0.1 274,027 + +1.1 274,027 + -2.0 274,091 - -1.9 274,123 + -0.3 274,123 + +0.5 274,123 + -0.9 274,131 - +0.3 274,242 + HSERO_RS01295 0.14 +0.7 274,304 + HSERO_RS01295 0.17 +2.6 274,392 + HSERO_RS01295 0.22 +0.5
Or see this region's nucleotide sequence