Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0912

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0910 and Ga0059261_0911 are separated by 191 nucleotidesGa0059261_0911 and Ga0059261_0912 are separated by 6 nucleotidesGa0059261_0912 and Ga0059261_0913 are separated by 43 nucleotides Ga0059261_0910: Ga0059261_0910 - hypothetical protein, at 944,805 to 945,161 _0910 Ga0059261_0911: Ga0059261_0911 - Domain of unknown function (DUF3597), at 945,353 to 945,742 _0911 Ga0059261_0912: Ga0059261_0912 - hypothetical protein, at 945,749 to 946,192 _0912 Ga0059261_0913: Ga0059261_0913 - phosphoenolpyruvate carboxykinase (ATP), at 946,236 to 947,858 _0913 Position (kb) 945 946 947Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 944.807 kb on - strandat 944.807 kb on - strandat 944.807 kb on - strandat 944.807 kb on - strandat 945.035 kb on + strand, within Ga0059261_0910at 945.035 kb on + strand, within Ga0059261_0910at 945.035 kb on + strand, within Ga0059261_0910at 945.035 kb on + strand, within Ga0059261_0910at 945.035 kb on + strand, within Ga0059261_0910at 945.035 kb on + strand, within Ga0059261_0910at 945.035 kb on + strand, within Ga0059261_0910at 945.035 kb on + strand, within Ga0059261_0910at 945.035 kb on + strand, within Ga0059261_0910at 945.035 kb on + strand, within Ga0059261_0910at 945.036 kb on - strand, within Ga0059261_0910at 945.036 kb on - strand, within Ga0059261_0910at 945.036 kb on - strand, within Ga0059261_0910at 945.040 kb on + strand, within Ga0059261_0910at 945.040 kb on + strand, within Ga0059261_0910at 945.041 kb on - strand, within Ga0059261_0910at 945.041 kb on - strand, within Ga0059261_0910at 945.041 kb on - strand, within Ga0059261_0910at 945.041 kb on - strand, within Ga0059261_0910at 945.107 kb on + strand, within Ga0059261_0910at 945.108 kb on - strand, within Ga0059261_0910at 945.108 kb on - strand, within Ga0059261_0910at 945.108 kb on - strand, within Ga0059261_0910at 945.179 kb on + strandat 945.179 kb on + strandat 945.179 kb on + strandat 945.179 kb on + strandat 945.179 kb on + strandat 945.180 kb on - strandat 945.180 kb on - strandat 945.180 kb on - strandat 945.201 kb on + strandat 945.201 kb on + strandat 945.201 kb on + strandat 945.202 kb on - strandat 945.202 kb on - strandat 945.255 kb on + strandat 945.256 kb on - strandat 945.632 kb on + strand, within Ga0059261_0911at 945.632 kb on + strand, within Ga0059261_0911at 945.633 kb on - strand, within Ga0059261_0911at 945.633 kb on - strand, within Ga0059261_0911at 945.633 kb on - strand, within Ga0059261_0911at 945.635 kb on - strand, within Ga0059261_0911at 945.822 kb on + strand, within Ga0059261_0912at 945.823 kb on - strand, within Ga0059261_0912at 945.823 kb on - strand, within Ga0059261_0912at 945.936 kb on + strandat 945.936 kb on + strand, within Ga0059261_0912at 945.936 kb on + strand, within Ga0059261_0912at 945.936 kb on + strand, within Ga0059261_0912at 945.936 kb on + strand, within Ga0059261_0912at 945.936 kb on + strand, within Ga0059261_0912at 945.936 kb on + strand, within Ga0059261_0912at 945.937 kb on - strand, within Ga0059261_0912at 945.937 kb on - strand, within Ga0059261_0912at 945.937 kb on - strand, within Ga0059261_0912at 945.937 kb on - strand, within Ga0059261_0912at 945.937 kb on - strand, within Ga0059261_0912at 945.961 kb on - strand, within Ga0059261_0912at 946.039 kb on - strand, within Ga0059261_0912at 946.043 kb on - strand, within Ga0059261_0912at 946.065 kb on + strand, within Ga0059261_0912at 946.065 kb on + strand, within Ga0059261_0912at 946.065 kb on + strand, within Ga0059261_0912at 946.065 kb on + strand, within Ga0059261_0912at 946.065 kb on + strand, within Ga0059261_0912at 946.065 kb on + strand, within Ga0059261_0912at 946.065 kb on + strand, within Ga0059261_0912at 946.066 kb on - strand, within Ga0059261_0912at 946.066 kb on - strand, within Ga0059261_0912at 946.066 kb on - strand, within Ga0059261_0912at 946.066 kb on - strand, within Ga0059261_0912at 946.282 kb on - strandat 946.360 kb on + strandat 946.360 kb on + strandat 946.360 kb on + strandat 946.360 kb on + strandat 946.361 kb on - strandat 946.361 kb on - strandat 946.361 kb on - strandat 946.633 kb on + strand, within Ga0059261_0913at 946.633 kb on + strand, within Ga0059261_0913at 946.633 kb on + strand, within Ga0059261_0913at 946.634 kb on - strand, within Ga0059261_0913at 946.735 kb on + strand, within Ga0059261_0913at 946.735 kb on + strand, within Ga0059261_0913at 946.801 kb on + strand, within Ga0059261_0913at 946.801 kb on + strand, within Ga0059261_0913at 946.801 kb on + strand, within Ga0059261_0913at 946.801 kb on + strand, within Ga0059261_0913at 946.802 kb on - strand, within Ga0059261_0913at 946.886 kb on - strand, within Ga0059261_0913at 946.886 kb on - strand, within Ga0059261_0913at 947.041 kb on + strand, within Ga0059261_0913at 947.041 kb on + strand, within Ga0059261_0913at 947.041 kb on + strand, within Ga0059261_0913at 947.042 kb on - strand, within Ga0059261_0913at 947.190 kb on - strand, within Ga0059261_0913

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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944,807 - -2.7
944,807 - -0.8
944,807 - -0.5
944,807 - -0.8
945,035 + Ga0059261_0910 0.64 -0.0
945,035 + Ga0059261_0910 0.64 -2.6
945,035 + Ga0059261_0910 0.64 -0.0
945,035 + Ga0059261_0910 0.64 -1.8
945,035 + Ga0059261_0910 0.64 +0.2
945,035 + Ga0059261_0910 0.64 +0.5
945,035 + Ga0059261_0910 0.64 +3.9
945,035 + Ga0059261_0910 0.64 +0.8
945,035 + Ga0059261_0910 0.64 -1.3
945,035 + Ga0059261_0910 0.64 -1.1
945,036 - Ga0059261_0910 0.65 -0.3
945,036 - Ga0059261_0910 0.65 +0.2
945,036 - Ga0059261_0910 0.65 -0.2
945,040 + Ga0059261_0910 0.66 -0.9
945,040 + Ga0059261_0910 0.66 -1.1
945,041 - Ga0059261_0910 0.66 -1.2
945,041 - Ga0059261_0910 0.66 +0.2
945,041 - Ga0059261_0910 0.66 +0.5
945,041 - Ga0059261_0910 0.66 -0.4
945,107 + Ga0059261_0910 0.85 +0.5
945,108 - Ga0059261_0910 0.85 -1.2
945,108 - Ga0059261_0910 0.85 -1.5
945,108 - Ga0059261_0910 0.85 -0.8
945,179 + +0.8
945,179 + +0.8
945,179 + -0.1
945,179 + +0.2
945,179 + +0.3
945,180 - +1.8
945,180 - -1.5
945,180 - +0.3
945,201 + -2.3
945,201 + -1.5
945,201 + -0.2
945,202 - -0.7
945,202 - -0.6
945,255 + +1.2
945,256 - +0.9
945,632 + Ga0059261_0911 0.72 -0.4
945,632 + Ga0059261_0911 0.72 +2.1
945,633 - Ga0059261_0911 0.72 +0.8
945,633 - Ga0059261_0911 0.72 +0.2
945,633 - Ga0059261_0911 0.72 -1.8
945,635 - Ga0059261_0911 0.72 +0.8
945,822 + Ga0059261_0912 0.16 +1.4
945,823 - Ga0059261_0912 0.17 -0.8
945,823 - Ga0059261_0912 0.17 -0.4
945,936 + +1.2
945,936 + Ga0059261_0912 0.42 +3.3
945,936 + Ga0059261_0912 0.42 -2.6
945,936 + Ga0059261_0912 0.42 -0.4
945,936 + Ga0059261_0912 0.42 +0.7
945,936 + Ga0059261_0912 0.42 +0.7
945,936 + Ga0059261_0912 0.42 +0.1
945,937 - Ga0059261_0912 0.42 +2.6
945,937 - Ga0059261_0912 0.42 +0.9
945,937 - Ga0059261_0912 0.42 +1.6
945,937 - Ga0059261_0912 0.42 -0.6
945,937 - Ga0059261_0912 0.42 -0.1
945,961 - Ga0059261_0912 0.48 +1.5
946,039 - Ga0059261_0912 0.65 -0.1
946,043 - Ga0059261_0912 0.66 -2.3
946,065 + Ga0059261_0912 0.71 +1.5
946,065 + Ga0059261_0912 0.71 -1.5
946,065 + Ga0059261_0912 0.71 -1.1
946,065 + Ga0059261_0912 0.71 -1.5
946,065 + Ga0059261_0912 0.71 -0.2
946,065 + Ga0059261_0912 0.71 +1.9
946,065 + Ga0059261_0912 0.71 -0.7
946,066 - Ga0059261_0912 0.71 -1.4
946,066 - Ga0059261_0912 0.71 -0.0
946,066 - Ga0059261_0912 0.71 -0.4
946,066 - Ga0059261_0912 0.71 -0.1
946,282 - +0.7
946,360 + +0.5
946,360 + +2.3
946,360 + -1.6
946,360 + +0.3
946,361 - -0.2
946,361 - -2.0
946,361 - +0.1
946,633 + Ga0059261_0913 0.24 -0.8
946,633 + Ga0059261_0913 0.24 +0.1
946,633 + Ga0059261_0913 0.24 -1.8
946,634 - Ga0059261_0913 0.25 +0.6
946,735 + Ga0059261_0913 0.31 +0.2
946,735 + Ga0059261_0913 0.31 +0.2
946,801 + Ga0059261_0913 0.35 +0.5
946,801 + Ga0059261_0913 0.35 +1.5
946,801 + Ga0059261_0913 0.35 -1.6
946,801 + Ga0059261_0913 0.35 -0.9
946,802 - Ga0059261_0913 0.35 -1.9
946,886 - Ga0059261_0913 0.40 +0.7
946,886 - Ga0059261_0913 0.40 -2.0
947,041 + Ga0059261_0913 0.50 +0.2
947,041 + Ga0059261_0913 0.50 -1.9
947,041 + Ga0059261_0913 0.50 -0.3
947,042 - Ga0059261_0913 0.50 -1.3
947,190 - Ga0059261_0913 0.59 -0.2

Or see this region's nucleotide sequence