Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0839

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0838 and Ga0059261_0839 overlap by 4 nucleotidesGa0059261_0839 and Ga0059261_0840 are separated by 94 nucleotides Ga0059261_0838: Ga0059261_0838 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases, at 877,795 to 879,156 _0838 Ga0059261_0839: Ga0059261_0839 - Acyl-CoA dehydrogenases, at 879,153 to 880,334 _0839 Ga0059261_0840: Ga0059261_0840 - Acyl-CoA dehydrogenases, at 880,429 to 881,556 _0840 Position (kb) 879 880 881Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 878.242 kb on + strandat 878.242 kb on + strand, within Ga0059261_0838at 878.242 kb on + strand, within Ga0059261_0838at 878.242 kb on + strand, within Ga0059261_0838at 878.242 kb on + strand, within Ga0059261_0838at 878.243 kb on - strand, within Ga0059261_0838at 878.243 kb on - strand, within Ga0059261_0838at 878.243 kb on - strand, within Ga0059261_0838at 878.243 kb on - strand, within Ga0059261_0838at 878.413 kb on + strand, within Ga0059261_0838at 878.413 kb on + strand, within Ga0059261_0838at 878.413 kb on + strand, within Ga0059261_0838at 878.414 kb on - strand, within Ga0059261_0838at 878.414 kb on - strand, within Ga0059261_0838at 878.414 kb on - strand, within Ga0059261_0838at 878.414 kb on - strand, within Ga0059261_0838at 878.431 kb on + strand, within Ga0059261_0838at 878.431 kb on + strand, within Ga0059261_0838at 878.431 kb on + strand, within Ga0059261_0838at 878.432 kb on - strand, within Ga0059261_0838at 878.530 kb on - strand, within Ga0059261_0838at 878.541 kb on + strand, within Ga0059261_0838at 878.542 kb on - strand, within Ga0059261_0838at 878.542 kb on - strand, within Ga0059261_0838at 878.591 kb on + strand, within Ga0059261_0838at 878.591 kb on + strand, within Ga0059261_0838at 878.591 kb on + strand, within Ga0059261_0838at 878.591 kb on + strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.592 kb on - strand, within Ga0059261_0838at 878.740 kb on + strand, within Ga0059261_0838at 878.740 kb on + strand, within Ga0059261_0838at 878.740 kb on + strand, within Ga0059261_0838at 878.938 kb on + strand, within Ga0059261_0838at 878.939 kb on - strand, within Ga0059261_0838at 878.939 kb on - strand, within Ga0059261_0838at 878.939 kb on - strand, within Ga0059261_0838at 878.939 kb on - strand, within Ga0059261_0838at 878.939 kb on - strand, within Ga0059261_0838at 878.974 kb on - strand, within Ga0059261_0838at 878.980 kb on + strand, within Ga0059261_0838at 878.980 kb on + strand, within Ga0059261_0838at 878.980 kb on + strand, within Ga0059261_0838at 878.980 kb on + strandat 878.980 kb on + strand, within Ga0059261_0838at 878.980 kb on + strand, within Ga0059261_0838at 878.981 kb on - strand, within Ga0059261_0838at 878.981 kb on - strand, within Ga0059261_0838at 878.981 kb on - strand, within Ga0059261_0838at 878.981 kb on - strand, within Ga0059261_0838at 878.981 kb on - strand, within Ga0059261_0838at 878.981 kb on - strand, within Ga0059261_0838at 878.981 kb on - strandat 878.981 kb on - strand, within Ga0059261_0838at 878.981 kb on - strand, within Ga0059261_0838at 879.016 kb on + strand, within Ga0059261_0838at 879.016 kb on + strand, within Ga0059261_0838at 879.017 kb on - strand, within Ga0059261_0838at 879.017 kb on - strand, within Ga0059261_0838at 879.034 kb on - strandat 879.354 kb on + strand, within Ga0059261_0839at 879.355 kb on - strand, within Ga0059261_0839at 879.355 kb on - strand, within Ga0059261_0839at 879.355 kb on - strand, within Ga0059261_0839at 879.355 kb on - strand, within Ga0059261_0839at 879.355 kb on - strand, within Ga0059261_0839at 879.477 kb on + strand, within Ga0059261_0839at 879.477 kb on + strand, within Ga0059261_0839at 879.477 kb on + strand, within Ga0059261_0839at 879.478 kb on - strand, within Ga0059261_0839at 879.478 kb on - strand, within Ga0059261_0839at 879.478 kb on - strand, within Ga0059261_0839at 879.550 kb on - strand, within Ga0059261_0839at 879.605 kb on + strand, within Ga0059261_0839at 879.605 kb on + strand, within Ga0059261_0839at 879.606 kb on - strand, within Ga0059261_0839at 879.618 kb on + strand, within Ga0059261_0839at 879.618 kb on + strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.619 kb on - strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.651 kb on + strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.652 kb on - strand, within Ga0059261_0839at 879.807 kb on + strand, within Ga0059261_0839at 879.879 kb on + strand, within Ga0059261_0839at 879.879 kb on + strand, within Ga0059261_0839at 879.879 kb on + strand, within Ga0059261_0839at 879.879 kb on + strand, within Ga0059261_0839at 879.880 kb on - strand, within Ga0059261_0839at 879.880 kb on - strand, within Ga0059261_0839at 879.880 kb on - strand, within Ga0059261_0839at 879.880 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.129 kb on - strand, within Ga0059261_0839at 880.132 kb on - strand, within Ga0059261_0839at 880.132 kb on - strand, within Ga0059261_0839at 880.264 kb on - strandat 880.332 kb on + strandat 880.332 kb on + strandat 880.332 kb on + strandat 880.332 kb on + strandat 880.332 kb on + strandat 880.333 kb on - strandat 880.333 kb on - strandat 880.333 kb on - strandat 880.333 kb on - strandat 880.333 kb on - strandat 880.438 kb on + strandat 880.438 kb on + strandat 880.439 kb on - strandat 881.203 kb on + strand, within Ga0059261_0840at 881.203 kb on + strand, within Ga0059261_0840at 881.203 kb on + strand, within Ga0059261_0840at 881.203 kb on + strand, within Ga0059261_0840at 881.204 kb on - strand, within Ga0059261_0840at 881.204 kb on - strand, within Ga0059261_0840at 881.278 kb on + strand, within Ga0059261_0840at 881.278 kb on + strand, within Ga0059261_0840at 881.279 kb on - strand, within Ga0059261_0840at 881.279 kb on - strandat 881.279 kb on - strand, within Ga0059261_0840at 881.279 kb on - strand, within Ga0059261_0840at 881.279 kb on - strand, within Ga0059261_0840at 881.279 kb on - strand, within Ga0059261_0840

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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878,242 + +2.8
878,242 + Ga0059261_0838 0.33 +0.1
878,242 + Ga0059261_0838 0.33 -0.6
878,242 + Ga0059261_0838 0.33 -2.2
878,242 + Ga0059261_0838 0.33 +0.0
878,243 - Ga0059261_0838 0.33 +0.3
878,243 - Ga0059261_0838 0.33 +0.8
878,243 - Ga0059261_0838 0.33 -0.2
878,243 - Ga0059261_0838 0.33 -1.2
878,413 + Ga0059261_0838 0.45 -1.2
878,413 + Ga0059261_0838 0.45 +1.2
878,413 + Ga0059261_0838 0.45 +2.1
878,414 - Ga0059261_0838 0.45 -1.5
878,414 - Ga0059261_0838 0.45 -0.1
878,414 - Ga0059261_0838 0.45 +0.6
878,414 - Ga0059261_0838 0.45 -1.5
878,431 + Ga0059261_0838 0.47 -1.3
878,431 + Ga0059261_0838 0.47 -0.2
878,431 + Ga0059261_0838 0.47 -1.3
878,432 - Ga0059261_0838 0.47 +0.4
878,530 - Ga0059261_0838 0.54 -1.4
878,541 + Ga0059261_0838 0.55 -0.5
878,542 - Ga0059261_0838 0.55 +0.4
878,542 - Ga0059261_0838 0.55 -1.2
878,591 + Ga0059261_0838 0.58 -0.9
878,591 + Ga0059261_0838 0.58 -1.4
878,591 + Ga0059261_0838 0.58 +0.3
878,591 + Ga0059261_0838 0.58 +1.3
878,592 - Ga0059261_0838 0.59 +0.3
878,592 - Ga0059261_0838 0.59 +0.5
878,592 - Ga0059261_0838 0.59 +1.3
878,592 - Ga0059261_0838 0.59 +0.4
878,592 - Ga0059261_0838 0.59 -0.1
878,592 - Ga0059261_0838 0.59 -0.9
878,592 - Ga0059261_0838 0.59 -0.2
878,740 + Ga0059261_0838 0.69 +0.9
878,740 + Ga0059261_0838 0.69 -0.4
878,740 + Ga0059261_0838 0.69 -0.7
878,938 + Ga0059261_0838 0.84 -0.6
878,939 - Ga0059261_0838 0.84 -0.9
878,939 - Ga0059261_0838 0.84 -1.2
878,939 - Ga0059261_0838 0.84 +0.6
878,939 - Ga0059261_0838 0.84 -0.6
878,939 - Ga0059261_0838 0.84 +0.4
878,974 - Ga0059261_0838 0.87 -0.8
878,980 + Ga0059261_0838 0.87 -0.2
878,980 + Ga0059261_0838 0.87 -1.4
878,980 + Ga0059261_0838 0.87 -0.6
878,980 + +2.8
878,980 + Ga0059261_0838 0.87 +3.8
878,980 + Ga0059261_0838 0.87 +0.5
878,981 - Ga0059261_0838 0.87 -0.1
878,981 - Ga0059261_0838 0.87 -0.9
878,981 - Ga0059261_0838 0.87 -0.1
878,981 - Ga0059261_0838 0.87 -0.2
878,981 - Ga0059261_0838 0.87 -0.7
878,981 - Ga0059261_0838 0.87 +1.2
878,981 - +0.8
878,981 - Ga0059261_0838 0.87 -2.3
878,981 - Ga0059261_0838 0.87 -0.1
879,016 + Ga0059261_0838 0.90 -1.7
879,016 + Ga0059261_0838 0.90 +0.4
879,017 - Ga0059261_0838 0.90 -0.7
879,017 - Ga0059261_0838 0.90 +3.9
879,034 - -0.6
879,354 + Ga0059261_0839 0.17 -0.5
879,355 - Ga0059261_0839 0.17 +3.3
879,355 - Ga0059261_0839 0.17 -1.2
879,355 - Ga0059261_0839 0.17 +4.4
879,355 - Ga0059261_0839 0.17 +1.0
879,355 - Ga0059261_0839 0.17 +2.8
879,477 + Ga0059261_0839 0.27 +1.6
879,477 + Ga0059261_0839 0.27 -1.6
879,477 + Ga0059261_0839 0.27 +0.6
879,478 - Ga0059261_0839 0.27 -1.8
879,478 - Ga0059261_0839 0.27 -0.7
879,478 - Ga0059261_0839 0.27 -0.5
879,550 - Ga0059261_0839 0.34 -2.4
879,605 + Ga0059261_0839 0.38 -0.7
879,605 + Ga0059261_0839 0.38 +0.6
879,606 - Ga0059261_0839 0.38 +0.8
879,618 + Ga0059261_0839 0.39 +0.4
879,618 + Ga0059261_0839 0.39 +0.2
879,619 - Ga0059261_0839 0.39 -0.1
879,619 - Ga0059261_0839 0.39 +0.2
879,619 - Ga0059261_0839 0.39 -0.3
879,619 - Ga0059261_0839 0.39 -1.2
879,619 - Ga0059261_0839 0.39 +2.8
879,619 - Ga0059261_0839 0.39 -0.7
879,619 - Ga0059261_0839 0.39 -0.5
879,651 + Ga0059261_0839 0.42 +1.0
879,651 + Ga0059261_0839 0.42 +1.3
879,651 + Ga0059261_0839 0.42 -0.1
879,651 + Ga0059261_0839 0.42 +0.2
879,651 + Ga0059261_0839 0.42 -0.8
879,652 - Ga0059261_0839 0.42 -0.7
879,652 - Ga0059261_0839 0.42 -0.7
879,652 - Ga0059261_0839 0.42 +0.9
879,652 - Ga0059261_0839 0.42 +1.2
879,652 - Ga0059261_0839 0.42 +1.0
879,807 + Ga0059261_0839 0.55 +1.8
879,879 + Ga0059261_0839 0.61 -2.2
879,879 + Ga0059261_0839 0.61 +0.8
879,879 + Ga0059261_0839 0.61 +0.8
879,879 + Ga0059261_0839 0.61 -1.2
879,880 - Ga0059261_0839 0.62 -1.5
879,880 - Ga0059261_0839 0.62 -2.2
879,880 - Ga0059261_0839 0.62 -1.4
879,880 - Ga0059261_0839 0.62 -0.2
880,129 - Ga0059261_0839 0.83 +0.6
880,129 - Ga0059261_0839 0.83 -0.8
880,129 - Ga0059261_0839 0.83 -1.3
880,129 - Ga0059261_0839 0.83 +0.6
880,129 - Ga0059261_0839 0.83 -1.6
880,129 - Ga0059261_0839 0.83 -0.5
880,132 - Ga0059261_0839 0.83 -1.7
880,132 - Ga0059261_0839 0.83 -0.4
880,264 - +1.8
880,332 + -1.3
880,332 + -0.8
880,332 + +2.4
880,332 + +2.8
880,332 + -0.2
880,333 - +0.4
880,333 - +0.1
880,333 - -0.2
880,333 - +1.0
880,333 - +0.3
880,438 + -1.7
880,438 + +1.4
880,439 - +1.4
881,203 + Ga0059261_0840 0.69 -0.1
881,203 + Ga0059261_0840 0.69 -2.2
881,203 + Ga0059261_0840 0.69 -1.5
881,203 + Ga0059261_0840 0.69 +1.8
881,204 - Ga0059261_0840 0.69 +1.3
881,204 - Ga0059261_0840 0.69 +0.3
881,278 + Ga0059261_0840 0.75 -0.3
881,278 + Ga0059261_0840 0.75 +0.8
881,279 - Ga0059261_0840 0.75 -0.3
881,279 - +2.8
881,279 - Ga0059261_0840 0.75 -0.7
881,279 - Ga0059261_0840 0.75 -2.8
881,279 - Ga0059261_0840 0.75 +1.2
881,279 - Ga0059261_0840 0.75 -1.6

Or see this region's nucleotide sequence