Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0747

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0746 and Ga0059261_0747 are separated by 92 nucleotidesGa0059261_0747 and Ga0059261_0748 overlap by 1 nucleotidesGa0059261_0748 and Ga0059261_0749 are separated by 109 nucleotidesGa0059261_0749 and Ga0059261_0750 are separated by 93 nucleotides Ga0059261_0746: Ga0059261_0746 - Predicted permease, DMT superfamily, at 775,534 to 776,433 _0746 Ga0059261_0747: Ga0059261_0747 - Protein of unknown function (DUF2975), at 776,526 to 777,041 _0747 Ga0059261_0748: Ga0059261_0748 - Predicted transcriptional regulator, at 777,041 to 777,250 _0748 Ga0059261_0749: Ga0059261_0749 - Membrane transporters of cations and cationic drugs, at 777,360 to 777,680 _0749 Ga0059261_0750: Ga0059261_0750 - NADH:ubiquinone oxidoreductase subunit 3 (chain A), at 777,774 to 778,151 _0750 Position (kb) 776 777 778Strain fitness (log2 ratio) -2 -1 0 1 2 3at 775.623 kb on + strandat 775.623 kb on + strandat 775.624 kb on - strand, within Ga0059261_0746at 775.636 kb on + strand, within Ga0059261_0746at 775.636 kb on + strand, within Ga0059261_0746at 775.651 kb on + strand, within Ga0059261_0746at 775.651 kb on + strand, within Ga0059261_0746at 775.681 kb on + strand, within Ga0059261_0746at 775.682 kb on - strand, within Ga0059261_0746at 775.682 kb on - strand, within Ga0059261_0746at 775.927 kb on + strand, within Ga0059261_0746at 775.928 kb on - strand, within Ga0059261_0746at 775.928 kb on - strand, within Ga0059261_0746at 775.930 kb on - strand, within Ga0059261_0746at 776.041 kb on + strand, within Ga0059261_0746at 776.099 kb on - strand, within Ga0059261_0746at 776.125 kb on + strand, within Ga0059261_0746at 776.125 kb on + strand, within Ga0059261_0746at 776.125 kb on + strand, within Ga0059261_0746at 776.206 kb on + strand, within Ga0059261_0746at 776.207 kb on - strand, within Ga0059261_0746at 776.207 kb on - strand, within Ga0059261_0746at 776.281 kb on + strand, within Ga0059261_0746at 776.281 kb on + strand, within Ga0059261_0746at 776.281 kb on + strand, within Ga0059261_0746at 776.281 kb on + strand, within Ga0059261_0746at 776.281 kb on + strand, within Ga0059261_0746at 776.281 kb on + strand, within Ga0059261_0746at 776.282 kb on - strand, within Ga0059261_0746at 776.282 kb on - strand, within Ga0059261_0746at 776.282 kb on - strand, within Ga0059261_0746at 776.282 kb on - strand, within Ga0059261_0746at 776.282 kb on - strand, within Ga0059261_0746at 776.282 kb on - strand, within Ga0059261_0746at 776.332 kb on - strand, within Ga0059261_0746at 776.444 kb on + strandat 776.444 kb on + strandat 776.511 kb on + strandat 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 776.745 kb on + strand, within Ga0059261_0747at 777.233 kb on + strandat 777.270 kb on + strandat 777.270 kb on + strandat 777.270 kb on + strandat 777.343 kb on + strandat 777.343 kb on + strandat 777.344 kb on - strandat 777.344 kb on - strandat 777.344 kb on - strandat 777.372 kb on + strandat 777.372 kb on + strandat 777.372 kb on + strandat 777.372 kb on + strandat 777.373 kb on - strandat 777.373 kb on - strandat 777.534 kb on + strand, within Ga0059261_0749at 777.535 kb on - strand, within Ga0059261_0749at 777.535 kb on - strand, within Ga0059261_0749at 777.535 kb on - strand, within Ga0059261_0749at 777.535 kb on - strand, within Ga0059261_0749at 777.535 kb on - strand, within Ga0059261_0749at 777.640 kb on + strandat 777.640 kb on + strand, within Ga0059261_0749at 777.640 kb on + strand, within Ga0059261_0749at 777.641 kb on - strand, within Ga0059261_0749at 777.641 kb on - strand, within Ga0059261_0749at 777.641 kb on - strand, within Ga0059261_0749at 777.829 kb on + strand, within Ga0059261_0750at 777.830 kb on - strand, within Ga0059261_0750at 777.918 kb on + strand, within Ga0059261_0750at 777.919 kb on - strand, within Ga0059261_0750at 777.919 kb on - strand, within Ga0059261_0750at 777.919 kb on - strand, within Ga0059261_0750at 777.975 kb on + strand, within Ga0059261_0750at 777.975 kb on + strand, within Ga0059261_0750at 777.976 kb on - strand, within Ga0059261_0750at 777.976 kb on - strand, within Ga0059261_0750

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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775,623 + +0.2
775,623 + -0.1
775,624 - Ga0059261_0746 0.10 +1.2
775,636 + Ga0059261_0746 0.11 -0.2
775,636 + Ga0059261_0746 0.11 +0.2
775,651 + Ga0059261_0746 0.13 -0.7
775,651 + Ga0059261_0746 0.13 -0.8
775,681 + Ga0059261_0746 0.16 -0.5
775,682 - Ga0059261_0746 0.16 -1.3
775,682 - Ga0059261_0746 0.16 -0.7
775,927 + Ga0059261_0746 0.44 -0.7
775,928 - Ga0059261_0746 0.44 -0.0
775,928 - Ga0059261_0746 0.44 -1.5
775,930 - Ga0059261_0746 0.44 +0.4
776,041 + Ga0059261_0746 0.56 -0.5
776,099 - Ga0059261_0746 0.63 +0.0
776,125 + Ga0059261_0746 0.66 -1.7
776,125 + Ga0059261_0746 0.66 -0.7
776,125 + Ga0059261_0746 0.66 -0.9
776,206 + Ga0059261_0746 0.75 +1.2
776,207 - Ga0059261_0746 0.75 -0.6
776,207 - Ga0059261_0746 0.75 +0.3
776,281 + Ga0059261_0746 0.83 -0.8
776,281 + Ga0059261_0746 0.83 -1.4
776,281 + Ga0059261_0746 0.83 -1.4
776,281 + Ga0059261_0746 0.83 -0.9
776,281 + Ga0059261_0746 0.83 +0.6
776,281 + Ga0059261_0746 0.83 -0.7
776,282 - Ga0059261_0746 0.83 -2.1
776,282 - Ga0059261_0746 0.83 -2.5
776,282 - Ga0059261_0746 0.83 +0.3
776,282 - Ga0059261_0746 0.83 +0.8
776,282 - Ga0059261_0746 0.83 +0.3
776,282 - Ga0059261_0746 0.83 +1.7
776,332 - Ga0059261_0746 0.89 -0.8
776,444 + +0.2
776,444 + +0.5
776,511 + +1.2
776,745 + Ga0059261_0747 0.42 -0.8
776,745 + Ga0059261_0747 0.42 +0.1
776,745 + Ga0059261_0747 0.42 -2.1
776,745 + Ga0059261_0747 0.42 -0.2
776,745 + Ga0059261_0747 0.42 +1.6
776,745 + Ga0059261_0747 0.42 -0.3
776,745 + Ga0059261_0747 0.42 +0.8
776,745 + Ga0059261_0747 0.42 -1.8
776,745 + Ga0059261_0747 0.42 +0.3
777,233 + -2.1
777,270 + -0.5
777,270 + -2.2
777,270 + -1.0
777,343 + -0.8
777,343 + +1.9
777,344 - +1.5
777,344 - +0.3
777,344 - -0.3
777,372 + -1.0
777,372 + +0.7
777,372 + -1.6
777,372 + -0.0
777,373 - +0.2
777,373 - -0.2
777,534 + Ga0059261_0749 0.54 -1.2
777,535 - Ga0059261_0749 0.55 -0.7
777,535 - Ga0059261_0749 0.55 -2.0
777,535 - Ga0059261_0749 0.55 -2.1
777,535 - Ga0059261_0749 0.55 -0.0
777,535 - Ga0059261_0749 0.55 -0.0
777,640 + +3.2
777,640 + Ga0059261_0749 0.87 +3.7
777,640 + Ga0059261_0749 0.87 -0.5
777,641 - Ga0059261_0749 0.88 -0.6
777,641 - Ga0059261_0749 0.88 +0.1
777,641 - Ga0059261_0749 0.88 +1.0
777,829 + Ga0059261_0750 0.15 -0.1
777,830 - Ga0059261_0750 0.15 -1.3
777,918 + Ga0059261_0750 0.38 +0.8
777,919 - Ga0059261_0750 0.38 -1.7
777,919 - Ga0059261_0750 0.38 +2.2
777,919 - Ga0059261_0750 0.38 -0.3
777,975 + Ga0059261_0750 0.53 +0.7
777,975 + Ga0059261_0750 0.53 -0.8
777,976 - Ga0059261_0750 0.53 -0.7
777,976 - Ga0059261_0750 0.53 -0.5

Or see this region's nucleotide sequence