Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0618 and Ga0059261_0619 overlap by 8 nucleotides Ga0059261_0619 and Ga0059261_0620 are separated by 449 nucleotides
Ga0059261_0618: Ga0059261_0618 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 656,356 to 658,143
_0618
Ga0059261_0619: Ga0059261_0619 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 658,136 to 659,476
_0619
Ga0059261_0620: Ga0059261_0620 - Outer membrane cobalamin receptor protein, at 659,926 to 661,821
_0620
Position (kb) 658
659
660 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 657.819 kb on - strand, within Ga0059261_0618 at 658.194 kb on + strand at 658.194 kb on + strand at 658.195 kb on - strand at 658.195 kb on - strand at 658.195 kb on - strand at 658.195 kb on - strand at 658.195 kb on - strand at 658.195 kb on - strand at 658.321 kb on + strand, within Ga0059261_0619 at 658.321 kb on + strand, within Ga0059261_0619 at 658.322 kb on - strand, within Ga0059261_0619 at 658.322 kb on - strand, within Ga0059261_0619 at 658.322 kb on - strand, within Ga0059261_0619 at 658.674 kb on + strand at 658.674 kb on + strand, within Ga0059261_0619 at 658.865 kb on - strand, within Ga0059261_0619 at 659.036 kb on + strand, within Ga0059261_0619 at 659.036 kb on + strand, within Ga0059261_0619 at 659.036 kb on + strand, within Ga0059261_0619 at 659.318 kb on + strand, within Ga0059261_0619 at 659.318 kb on + strand, within Ga0059261_0619 at 659.319 kb on - strand, within Ga0059261_0619 at 659.319 kb on - strand, within Ga0059261_0619 at 659.411 kb on + strand at 659.411 kb on + strand at 659.412 kb on - strand at 659.510 kb on - strand at 659.510 kb on - strand at 659.639 kb on + strand at 659.639 kb on + strand at 659.639 kb on + strand at 659.639 kb on + strand at 659.640 kb on - strand at 659.640 kb on - strand at 659.640 kb on - strand at 659.640 kb on - strand at 659.956 kb on + strand at 659.956 kb on + strand at 659.956 kb on + strand at 659.956 kb on + strand at 659.957 kb on - strand at 659.957 kb on - strand at 659.957 kb on - strand at 659.962 kb on + strand at 659.963 kb on - strand at 659.963 kb on - strand at 660.241 kb on + strand, within Ga0059261_0620 at 660.241 kb on + strand, within Ga0059261_0620 at 660.241 kb on + strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.242 kb on - strand, within Ga0059261_0620 at 660.292 kb on + strand, within Ga0059261_0620 at 660.292 kb on + strand, within Ga0059261_0620 at 660.292 kb on + strand, within Ga0059261_0620 at 660.364 kb on + strand, within Ga0059261_0620 at 660.364 kb on + strand, within Ga0059261_0620 at 660.452 kb on - strand, within Ga0059261_0620 at 660.452 kb on - strand, within Ga0059261_0620 at 660.460 kb on + strand, within Ga0059261_0620 at 660.460 kb on + strand, within Ga0059261_0620 at 660.460 kb on + strand, within Ga0059261_0620 at 660.460 kb on + strand, within Ga0059261_0620
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 657,819 - Ga0059261_0618 0.82 -1.2 658,194 + +0.5 658,194 + +0.5 658,195 - -0.2 658,195 - -0.8 658,195 - +1.8 658,195 - -0.5 658,195 - -1.4 658,195 - -0.4 658,321 + Ga0059261_0619 0.14 -2.4 658,321 + Ga0059261_0619 0.14 +0.1 658,322 - Ga0059261_0619 0.14 +0.3 658,322 - Ga0059261_0619 0.14 -0.0 658,322 - Ga0059261_0619 0.14 -0.5 658,674 + +2.8 658,674 + Ga0059261_0619 0.40 -1.9 658,865 - Ga0059261_0619 0.54 -1.1 659,036 + Ga0059261_0619 0.67 +0.7 659,036 + Ga0059261_0619 0.67 +1.6 659,036 + Ga0059261_0619 0.67 -0.5 659,318 + Ga0059261_0619 0.88 -0.0 659,318 + Ga0059261_0619 0.88 +0.5 659,319 - Ga0059261_0619 0.88 +2.0 659,319 - Ga0059261_0619 0.88 -0.7 659,411 + -0.9 659,411 + +0.2 659,412 - -1.7 659,510 - -0.6 659,510 - -1.1 659,639 + -0.7 659,639 + +2.0 659,639 + -0.5 659,639 + +1.3 659,640 - +0.3 659,640 - +1.8 659,640 - +0.2 659,640 - -1.4 659,956 + -0.2 659,956 + +0.3 659,956 + -2.0 659,956 + -0.0 659,957 - -1.8 659,957 - -1.6 659,957 - -1.1 659,962 + -1.7 659,963 - -0.9 659,963 - -1.2 660,241 + Ga0059261_0620 0.17 -1.4 660,241 + Ga0059261_0620 0.17 -0.6 660,241 + Ga0059261_0620 0.17 +1.6 660,242 - Ga0059261_0620 0.17 +1.9 660,242 - Ga0059261_0620 0.17 -0.6 660,242 - Ga0059261_0620 0.17 +0.5 660,242 - Ga0059261_0620 0.17 -1.2 660,242 - Ga0059261_0620 0.17 -0.9 660,242 - Ga0059261_0620 0.17 +0.4 660,292 + Ga0059261_0620 0.19 +0.3 660,292 + Ga0059261_0620 0.19 -1.8 660,292 + Ga0059261_0620 0.19 +0.8 660,364 + Ga0059261_0620 0.23 -1.2 660,364 + Ga0059261_0620 0.23 +0.4 660,452 - Ga0059261_0620 0.28 -1.4 660,452 - Ga0059261_0620 0.28 +0.8 660,460 + Ga0059261_0620 0.28 -0.2 660,460 + Ga0059261_0620 0.28 -0.4 660,460 + Ga0059261_0620 0.28 +0.2 660,460 + Ga0059261_0620 0.28 -1.8
Or see this region's nucleotide sequence