Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0552 and Ga0059261_0553 are separated by 2 nucleotides Ga0059261_0553 and Ga0059261_0554 overlap by 4 nucleotides
Ga0059261_0552: Ga0059261_0552 - Predicted dehydrogenases and related proteins, at 566,000 to 567,166
_0552
Ga0059261_0553: Ga0059261_0553 - Sugar phosphate isomerases/epimerases, at 567,169 to 568,218
_0553
Ga0059261_0554: Ga0059261_0554 - Nucleoside H+ symporter, at 568,215 to 569,465
_0554
Position (kb) 567
568
569 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 566.172 kb on + strand, within Ga0059261_0552 at 566.172 kb on + strand, within Ga0059261_0552 at 566.176 kb on + strand, within Ga0059261_0552 at 566.176 kb on + strand, within Ga0059261_0552 at 566.176 kb on + strand, within Ga0059261_0552 at 566.177 kb on - strand, within Ga0059261_0552 at 566.177 kb on - strand, within Ga0059261_0552 at 566.177 kb on - strand at 566.177 kb on - strand, within Ga0059261_0552 at 566.177 kb on - strand at 566.196 kb on + strand, within Ga0059261_0552 at 566.664 kb on + strand, within Ga0059261_0552 at 566.664 kb on + strand, within Ga0059261_0552 at 566.675 kb on + strand, within Ga0059261_0552 at 566.675 kb on + strand, within Ga0059261_0552 at 566.675 kb on + strand, within Ga0059261_0552 at 566.676 kb on - strand at 566.676 kb on - strand at 566.740 kb on - strand, within Ga0059261_0552 at 566.748 kb on + strand, within Ga0059261_0552 at 566.749 kb on - strand, within Ga0059261_0552 at 566.749 kb on - strand, within Ga0059261_0552 at 566.749 kb on - strand, within Ga0059261_0552 at 567.255 kb on + strand at 567.255 kb on + strand at 567.255 kb on + strand at 567.256 kb on - strand at 567.256 kb on - strand at 567.256 kb on - strand at 567.342 kb on + strand, within Ga0059261_0553 at 567.344 kb on + strand, within Ga0059261_0553 at 567.344 kb on + strand, within Ga0059261_0553 at 567.345 kb on - strand, within Ga0059261_0553 at 567.345 kb on - strand, within Ga0059261_0553 at 567.345 kb on - strand, within Ga0059261_0553 at 567.345 kb on - strand, within Ga0059261_0553 at 567.350 kb on + strand, within Ga0059261_0553 at 567.350 kb on + strand, within Ga0059261_0553 at 567.350 kb on + strand, within Ga0059261_0553 at 567.372 kb on + strand, within Ga0059261_0553 at 567.440 kb on + strand, within Ga0059261_0553 at 567.441 kb on - strand, within Ga0059261_0553 at 567.449 kb on + strand, within Ga0059261_0553 at 567.449 kb on + strand, within Ga0059261_0553 at 567.449 kb on + strand, within Ga0059261_0553 at 567.449 kb on + strand, within Ga0059261_0553 at 567.449 kb on + strand, within Ga0059261_0553 at 567.449 kb on + strand, within Ga0059261_0553 at 567.450 kb on - strand, within Ga0059261_0553 at 567.490 kb on - strand, within Ga0059261_0553 at 567.490 kb on - strand, within Ga0059261_0553 at 567.490 kb on - strand, within Ga0059261_0553 at 567.490 kb on - strand, within Ga0059261_0553 at 567.518 kb on + strand, within Ga0059261_0553 at 567.539 kb on + strand, within Ga0059261_0553 at 567.560 kb on + strand, within Ga0059261_0553 at 567.560 kb on + strand, within Ga0059261_0553 at 567.560 kb on + strand, within Ga0059261_0553 at 567.560 kb on + strand, within Ga0059261_0553 at 567.560 kb on + strand, within Ga0059261_0553 at 567.560 kb on + strand, within Ga0059261_0553 at 567.560 kb on + strand, within Ga0059261_0553 at 567.560 kb on + strand, within Ga0059261_0553 at 567.560 kb on + strand, within Ga0059261_0553 at 567.561 kb on - strand, within Ga0059261_0553 at 567.561 kb on - strand, within Ga0059261_0553 at 567.646 kb on - strand, within Ga0059261_0553 at 567.779 kb on + strand, within Ga0059261_0553 at 567.779 kb on + strand, within Ga0059261_0553 at 567.780 kb on - strand, within Ga0059261_0553 at 567.780 kb on - strand, within Ga0059261_0553 at 567.785 kb on + strand, within Ga0059261_0553 at 567.785 kb on + strand, within Ga0059261_0553 at 567.785 kb on + strand, within Ga0059261_0553 at 567.785 kb on + strand, within Ga0059261_0553 at 567.785 kb on + strand, within Ga0059261_0553 at 567.785 kb on + strand, within Ga0059261_0553 at 567.786 kb on - strand, within Ga0059261_0553 at 567.786 kb on - strand, within Ga0059261_0553 at 567.786 kb on - strand, within Ga0059261_0553 at 567.944 kb on + strand, within Ga0059261_0553 at 567.944 kb on + strand, within Ga0059261_0553 at 567.944 kb on + strand, within Ga0059261_0553 at 567.944 kb on + strand, within Ga0059261_0553 at 567.945 kb on - strand, within Ga0059261_0553 at 567.945 kb on - strand, within Ga0059261_0553 at 567.945 kb on - strand, within Ga0059261_0553 at 567.945 kb on - strand, within Ga0059261_0553 at 567.945 kb on - strand, within Ga0059261_0553 at 567.945 kb on - strand, within Ga0059261_0553 at 567.945 kb on - strand, within Ga0059261_0553 at 568.043 kb on + strand, within Ga0059261_0553 at 568.043 kb on + strand, within Ga0059261_0553 at 568.043 kb on + strand, within Ga0059261_0553 at 568.043 kb on + strand, within Ga0059261_0553 at 568.044 kb on - strand, within Ga0059261_0553 at 568.044 kb on - strand, within Ga0059261_0553 at 568.112 kb on + strand, within Ga0059261_0553 at 568.113 kb on - strand, within Ga0059261_0553 at 568.113 kb on - strand, within Ga0059261_0553 at 568.152 kb on + strand at 568.153 kb on - strand at 568.153 kb on - strand at 568.297 kb on + strand at 568.351 kb on + strand, within Ga0059261_0554 at 568.352 kb on - strand, within Ga0059261_0554 at 568.352 kb on - strand at 568.352 kb on - strand, within Ga0059261_0554 at 568.385 kb on + strand, within Ga0059261_0554 at 568.386 kb on - strand, within Ga0059261_0554 at 568.396 kb on + strand, within Ga0059261_0554 at 568.396 kb on + strand, within Ga0059261_0554 at 568.396 kb on + strand, within Ga0059261_0554 at 568.397 kb on - strand, within Ga0059261_0554 at 568.397 kb on - strand, within Ga0059261_0554 at 568.397 kb on - strand, within Ga0059261_0554 at 568.457 kb on + strand, within Ga0059261_0554 at 568.465 kb on + strand, within Ga0059261_0554 at 568.466 kb on - strand, within Ga0059261_0554 at 568.466 kb on - strand, within Ga0059261_0554 at 568.466 kb on - strand, within Ga0059261_0554 at 568.525 kb on + strand, within Ga0059261_0554 at 568.525 kb on + strand, within Ga0059261_0554 at 568.525 kb on + strand, within Ga0059261_0554 at 568.526 kb on - strand, within Ga0059261_0554 at 568.526 kb on - strand, within Ga0059261_0554 at 568.526 kb on - strand, within Ga0059261_0554 at 568.526 kb on - strand, within Ga0059261_0554 at 568.526 kb on - strand, within Ga0059261_0554 at 568.573 kb on + strand, within Ga0059261_0554 at 568.692 kb on - strand, within Ga0059261_0554 at 568.724 kb on + strand at 568.725 kb on - strand, within Ga0059261_0554 at 568.725 kb on - strand, within Ga0059261_0554 at 568.726 kb on + strand, within Ga0059261_0554 at 568.727 kb on - strand, within Ga0059261_0554 at 568.727 kb on - strand, within Ga0059261_0554 at 568.727 kb on - strand, within Ga0059261_0554 at 568.738 kb on + strand, within Ga0059261_0554 at 568.739 kb on - strand, within Ga0059261_0554 at 568.739 kb on - strand, within Ga0059261_0554 at 568.744 kb on + strand, within Ga0059261_0554 at 568.744 kb on + strand, within Ga0059261_0554 at 568.744 kb on + strand, within Ga0059261_0554 at 568.744 kb on + strand, within Ga0059261_0554 at 568.744 kb on + strand, within Ga0059261_0554 at 568.745 kb on - strand, within Ga0059261_0554 at 568.745 kb on - strand, within Ga0059261_0554 at 568.745 kb on - strand, within Ga0059261_0554 at 568.745 kb on - strand, within Ga0059261_0554 at 568.745 kb on - strand, within Ga0059261_0554 at 568.745 kb on - strand, within Ga0059261_0554 at 568.747 kb on + strand, within Ga0059261_0554 at 568.747 kb on + strand, within Ga0059261_0554 at 568.747 kb on + strand, within Ga0059261_0554 at 568.747 kb on + strand at 568.747 kb on + strand, within Ga0059261_0554 at 568.747 kb on + strand, within Ga0059261_0554 at 568.747 kb on + strand, within Ga0059261_0554 at 568.748 kb on - strand, within Ga0059261_0554 at 568.748 kb on - strand, within Ga0059261_0554 at 568.748 kb on - strand, within Ga0059261_0554 at 568.748 kb on - strand, within Ga0059261_0554 at 568.748 kb on - strand, within Ga0059261_0554 at 568.748 kb on - strand, within Ga0059261_0554 at 568.748 kb on - strand, within Ga0059261_0554 at 568.798 kb on + strand at 568.799 kb on - strand, within Ga0059261_0554 at 568.799 kb on - strand, within Ga0059261_0554 at 568.799 kb on - strand, within Ga0059261_0554 at 568.903 kb on + strand, within Ga0059261_0554 at 568.903 kb on + strand at 568.903 kb on + strand, within Ga0059261_0554 at 568.903 kb on + strand, within Ga0059261_0554 at 568.903 kb on + strand, within Ga0059261_0554 at 568.904 kb on - strand, within Ga0059261_0554 at 568.904 kb on - strand, within Ga0059261_0554 at 568.904 kb on - strand, within Ga0059261_0554 at 569.098 kb on + strand, within Ga0059261_0554 at 569.098 kb on + strand, within Ga0059261_0554 at 569.098 kb on + strand, within Ga0059261_0554 at 569.098 kb on + strand, within Ga0059261_0554 at 569.098 kb on + strand, within Ga0059261_0554 at 569.099 kb on - strand, within Ga0059261_0554 at 569.099 kb on - strand, within Ga0059261_0554 at 569.099 kb on - strand, within Ga0059261_0554 at 569.099 kb on - strand, within Ga0059261_0554 at 569.110 kb on + strand, within Ga0059261_0554 at 569.110 kb on + strand, within Ga0059261_0554 at 569.110 kb on + strand, within Ga0059261_0554 at 569.110 kb on + strand, within Ga0059261_0554 at 569.111 kb on - strand, within Ga0059261_0554 at 569.111 kb on - strand, within Ga0059261_0554
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 566,172 + Ga0059261_0552 0.15 +1.7 566,172 + Ga0059261_0552 0.15 +2.8 566,176 + Ga0059261_0552 0.15 +3.3 566,176 + Ga0059261_0552 0.15 -2.3 566,176 + Ga0059261_0552 0.15 +0.4 566,177 - Ga0059261_0552 0.15 -0.2 566,177 - Ga0059261_0552 0.15 -0.9 566,177 - +2.8 566,177 - Ga0059261_0552 0.15 -0.8 566,177 - +0.8 566,196 + Ga0059261_0552 0.17 +0.5 566,664 + Ga0059261_0552 0.57 -1.9 566,664 + Ga0059261_0552 0.57 +0.8 566,675 + Ga0059261_0552 0.58 -0.1 566,675 + Ga0059261_0552 0.58 +0.2 566,675 + Ga0059261_0552 0.58 -2.2 566,676 - +1.8 566,676 - +1.8 566,740 - Ga0059261_0552 0.63 +0.5 566,748 + Ga0059261_0552 0.64 +0.8 566,749 - Ga0059261_0552 0.64 -0.0 566,749 - Ga0059261_0552 0.64 +0.5 566,749 - Ga0059261_0552 0.64 -0.7 567,255 + -0.4 567,255 + +0.5 567,255 + +1.2 567,256 - +0.1 567,256 - -1.6 567,256 - -2.0 567,342 + Ga0059261_0553 0.16 -0.2 567,344 + Ga0059261_0553 0.17 -1.6 567,344 + Ga0059261_0553 0.17 -0.8 567,345 - Ga0059261_0553 0.17 -0.8 567,345 - Ga0059261_0553 0.17 -0.5 567,345 - Ga0059261_0553 0.17 -1.1 567,345 - Ga0059261_0553 0.17 -1.5 567,350 + Ga0059261_0553 0.17 -1.4 567,350 + Ga0059261_0553 0.17 -1.2 567,350 + Ga0059261_0553 0.17 -1.9 567,372 + Ga0059261_0553 0.19 -0.2 567,440 + Ga0059261_0553 0.26 -2.0 567,441 - Ga0059261_0553 0.26 +0.5 567,449 + Ga0059261_0553 0.27 -0.0 567,449 + Ga0059261_0553 0.27 -1.2 567,449 + Ga0059261_0553 0.27 -0.8 567,449 + Ga0059261_0553 0.27 +1.6 567,449 + Ga0059261_0553 0.27 +0.0 567,449 + Ga0059261_0553 0.27 -0.3 567,450 - Ga0059261_0553 0.27 -1.1 567,490 - Ga0059261_0553 0.31 +0.4 567,490 - Ga0059261_0553 0.31 -0.5 567,490 - Ga0059261_0553 0.31 -0.0 567,490 - Ga0059261_0553 0.31 +0.4 567,518 + Ga0059261_0553 0.33 +0.2 567,539 + Ga0059261_0553 0.35 +1.0 567,560 + Ga0059261_0553 0.37 -0.5 567,560 + Ga0059261_0553 0.37 -1.3 567,560 + Ga0059261_0553 0.37 +0.4 567,560 + Ga0059261_0553 0.37 -1.3 567,560 + Ga0059261_0553 0.37 -1.1 567,560 + Ga0059261_0553 0.37 -2.3 567,560 + Ga0059261_0553 0.37 -0.4 567,560 + Ga0059261_0553 0.37 -0.6 567,560 + Ga0059261_0553 0.37 +1.8 567,561 - Ga0059261_0553 0.37 -1.7 567,561 - Ga0059261_0553 0.37 +3.5 567,646 - Ga0059261_0553 0.45 -1.2 567,779 + Ga0059261_0553 0.58 -1.7 567,779 + Ga0059261_0553 0.58 -1.5 567,780 - Ga0059261_0553 0.58 -0.3 567,780 - Ga0059261_0553 0.58 -1.0 567,785 + Ga0059261_0553 0.59 -1.2 567,785 + Ga0059261_0553 0.59 +0.1 567,785 + Ga0059261_0553 0.59 -1.2 567,785 + Ga0059261_0553 0.59 +0.5 567,785 + Ga0059261_0553 0.59 -1.1 567,785 + Ga0059261_0553 0.59 +0.1 567,786 - Ga0059261_0553 0.59 -0.9 567,786 - Ga0059261_0553 0.59 +1.2 567,786 - Ga0059261_0553 0.59 +3.4 567,944 + Ga0059261_0553 0.74 -1.0 567,944 + Ga0059261_0553 0.74 +1.2 567,944 + Ga0059261_0553 0.74 +1.2 567,944 + Ga0059261_0553 0.74 -0.0 567,945 - Ga0059261_0553 0.74 -0.2 567,945 - Ga0059261_0553 0.74 +1.1 567,945 - Ga0059261_0553 0.74 +0.5 567,945 - Ga0059261_0553 0.74 +3.5 567,945 - Ga0059261_0553 0.74 -0.2 567,945 - Ga0059261_0553 0.74 +0.5 567,945 - Ga0059261_0553 0.74 +0.2 568,043 + Ga0059261_0553 0.83 -0.4 568,043 + Ga0059261_0553 0.83 +0.8 568,043 + Ga0059261_0553 0.83 -1.0 568,043 + Ga0059261_0553 0.83 -2.7 568,044 - Ga0059261_0553 0.83 +0.4 568,044 - Ga0059261_0553 0.83 +0.5 568,112 + Ga0059261_0553 0.90 +0.0 568,113 - Ga0059261_0553 0.90 -0.7 568,113 - Ga0059261_0553 0.90 -0.0 568,152 + -0.0 568,153 - +0.5 568,153 - -1.1 568,297 + -1.7 568,351 + Ga0059261_0554 0.11 -0.0 568,352 - Ga0059261_0554 0.11 -0.9 568,352 - -0.0 568,352 - Ga0059261_0554 0.11 -1.9 568,385 + Ga0059261_0554 0.14 +0.4 568,386 - Ga0059261_0554 0.14 -0.4 568,396 + Ga0059261_0554 0.14 -0.9 568,396 + Ga0059261_0554 0.14 +0.6 568,396 + Ga0059261_0554 0.14 -0.3 568,397 - Ga0059261_0554 0.15 -1.9 568,397 - Ga0059261_0554 0.15 -1.5 568,397 - Ga0059261_0554 0.15 -1.6 568,457 + Ga0059261_0554 0.19 +0.5 568,465 + Ga0059261_0554 0.20 +0.6 568,466 - Ga0059261_0554 0.20 -1.3 568,466 - Ga0059261_0554 0.20 -0.9 568,466 - Ga0059261_0554 0.20 +2.5 568,525 + Ga0059261_0554 0.25 +0.4 568,525 + Ga0059261_0554 0.25 +0.2 568,525 + Ga0059261_0554 0.25 -0.0 568,526 - Ga0059261_0554 0.25 -1.9 568,526 - Ga0059261_0554 0.25 -0.1 568,526 - Ga0059261_0554 0.25 +0.4 568,526 - Ga0059261_0554 0.25 +1.0 568,526 - Ga0059261_0554 0.25 -0.4 568,573 + Ga0059261_0554 0.29 -1.4 568,692 - Ga0059261_0554 0.38 -1.7 568,724 + +2.4 568,725 - Ga0059261_0554 0.41 -1.9 568,725 - Ga0059261_0554 0.41 +1.2 568,726 + Ga0059261_0554 0.41 -1.7 568,727 - Ga0059261_0554 0.41 -1.0 568,727 - Ga0059261_0554 0.41 +0.8 568,727 - Ga0059261_0554 0.41 -1.6 568,738 + Ga0059261_0554 0.42 +0.2 568,739 - Ga0059261_0554 0.42 -0.0 568,739 - Ga0059261_0554 0.42 +2.0 568,744 + Ga0059261_0554 0.42 +0.1 568,744 + Ga0059261_0554 0.42 -0.5 568,744 + Ga0059261_0554 0.42 -0.7 568,744 + Ga0059261_0554 0.42 +2.9 568,744 + Ga0059261_0554 0.42 +1.2 568,745 - Ga0059261_0554 0.42 +0.3 568,745 - Ga0059261_0554 0.42 -1.0 568,745 - Ga0059261_0554 0.42 +0.1 568,745 - Ga0059261_0554 0.42 +2.2 568,745 - Ga0059261_0554 0.42 +0.1 568,745 - Ga0059261_0554 0.42 -1.7 568,747 + Ga0059261_0554 0.43 +1.7 568,747 + Ga0059261_0554 0.43 -0.6 568,747 + Ga0059261_0554 0.43 +0.0 568,747 + +0.8 568,747 + Ga0059261_0554 0.43 -1.0 568,747 + Ga0059261_0554 0.43 -0.2 568,747 + Ga0059261_0554 0.43 -1.1 568,748 - Ga0059261_0554 0.43 +0.0 568,748 - Ga0059261_0554 0.43 +0.9 568,748 - Ga0059261_0554 0.43 +1.2 568,748 - Ga0059261_0554 0.43 +2.4 568,748 - Ga0059261_0554 0.43 -0.9 568,748 - Ga0059261_0554 0.43 +0.7 568,748 - Ga0059261_0554 0.43 +1.1 568,798 + +2.8 568,799 - Ga0059261_0554 0.47 -2.4 568,799 - Ga0059261_0554 0.47 +0.2 568,799 - Ga0059261_0554 0.47 +0.9 568,903 + Ga0059261_0554 0.55 +1.1 568,903 + +1.8 568,903 + Ga0059261_0554 0.55 -1.7 568,903 + Ga0059261_0554 0.55 -0.2 568,903 + Ga0059261_0554 0.55 -1.0 568,904 - Ga0059261_0554 0.55 +0.5 568,904 - Ga0059261_0554 0.55 +0.4 568,904 - Ga0059261_0554 0.55 +0.1 569,098 + Ga0059261_0554 0.71 +2.8 569,098 + Ga0059261_0554 0.71 -1.2 569,098 + Ga0059261_0554 0.71 -0.3 569,098 + Ga0059261_0554 0.71 -0.2 569,098 + Ga0059261_0554 0.71 -0.8 569,099 - Ga0059261_0554 0.71 -0.3 569,099 - Ga0059261_0554 0.71 -0.2 569,099 - Ga0059261_0554 0.71 -0.4 569,099 - Ga0059261_0554 0.71 -0.4 569,110 + Ga0059261_0554 0.72 +1.0 569,110 + Ga0059261_0554 0.72 +1.5 569,110 + Ga0059261_0554 0.72 -0.6 569,110 + Ga0059261_0554 0.72 -0.6 569,111 - Ga0059261_0554 0.72 +0.4 569,111 - Ga0059261_0554 0.72 +1.1
Or see this region's nucleotide sequence