Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0552

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0550 and Ga0059261_0551 overlap by 1 nucleotidesGa0059261_0551 and Ga0059261_0552 are separated by 43 nucleotidesGa0059261_0552 and Ga0059261_0553 are separated by 2 nucleotides Ga0059261_0550: Ga0059261_0550 - Hydroxypyruvate isomerase, at 564,650 to 565,573 _0550 Ga0059261_0551: Ga0059261_0551 - Cytochrome c2, at 565,573 to 565,956 _0551 Ga0059261_0552: Ga0059261_0552 - Predicted dehydrogenases and related proteins, at 566,000 to 567,166 _0552 Ga0059261_0553: Ga0059261_0553 - Sugar phosphate isomerases/epimerases, at 567,169 to 568,218 _0553 Position (kb) 565 566 567 568Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 565.112 kb on - strand, within Ga0059261_0550at 565.461 kb on + strand, within Ga0059261_0550at 565.461 kb on + strand, within Ga0059261_0550at 565.461 kb on + strand, within Ga0059261_0550at 565.462 kb on - strand, within Ga0059261_0550at 565.462 kb on - strand, within Ga0059261_0550at 565.598 kb on + strandat 565.598 kb on + strandat 565.598 kb on + strandat 565.598 kb on + strandat 565.599 kb on - strandat 565.599 kb on - strandat 565.742 kb on + strand, within Ga0059261_0551at 565.742 kb on + strand, within Ga0059261_0551at 565.743 kb on - strand, within Ga0059261_0551at 565.779 kb on + strand, within Ga0059261_0551at 566.172 kb on + strand, within Ga0059261_0552at 566.172 kb on + strand, within Ga0059261_0552at 566.176 kb on + strand, within Ga0059261_0552at 566.176 kb on + strand, within Ga0059261_0552at 566.176 kb on + strand, within Ga0059261_0552at 566.177 kb on - strand, within Ga0059261_0552at 566.177 kb on - strand, within Ga0059261_0552at 566.177 kb on - strandat 566.177 kb on - strand, within Ga0059261_0552at 566.177 kb on - strandat 566.196 kb on + strand, within Ga0059261_0552at 566.664 kb on + strand, within Ga0059261_0552at 566.664 kb on + strand, within Ga0059261_0552at 566.675 kb on + strand, within Ga0059261_0552at 566.675 kb on + strand, within Ga0059261_0552at 566.675 kb on + strand, within Ga0059261_0552at 566.676 kb on - strandat 566.676 kb on - strandat 566.740 kb on - strand, within Ga0059261_0552at 566.748 kb on + strand, within Ga0059261_0552at 566.749 kb on - strand, within Ga0059261_0552at 566.749 kb on - strand, within Ga0059261_0552at 566.749 kb on - strand, within Ga0059261_0552at 567.255 kb on + strandat 567.255 kb on + strandat 567.255 kb on + strandat 567.256 kb on - strandat 567.256 kb on - strandat 567.256 kb on - strandat 567.342 kb on + strand, within Ga0059261_0553at 567.344 kb on + strand, within Ga0059261_0553at 567.344 kb on + strand, within Ga0059261_0553at 567.345 kb on - strand, within Ga0059261_0553at 567.345 kb on - strand, within Ga0059261_0553at 567.345 kb on - strand, within Ga0059261_0553at 567.345 kb on - strand, within Ga0059261_0553at 567.350 kb on + strand, within Ga0059261_0553at 567.350 kb on + strand, within Ga0059261_0553at 567.350 kb on + strand, within Ga0059261_0553at 567.372 kb on + strand, within Ga0059261_0553at 567.440 kb on + strand, within Ga0059261_0553at 567.441 kb on - strand, within Ga0059261_0553at 567.449 kb on + strand, within Ga0059261_0553at 567.449 kb on + strand, within Ga0059261_0553at 567.449 kb on + strand, within Ga0059261_0553at 567.449 kb on + strand, within Ga0059261_0553at 567.449 kb on + strand, within Ga0059261_0553at 567.449 kb on + strand, within Ga0059261_0553at 567.450 kb on - strand, within Ga0059261_0553at 567.490 kb on - strand, within Ga0059261_0553at 567.490 kb on - strand, within Ga0059261_0553at 567.490 kb on - strand, within Ga0059261_0553at 567.490 kb on - strand, within Ga0059261_0553at 567.518 kb on + strand, within Ga0059261_0553at 567.539 kb on + strand, within Ga0059261_0553at 567.560 kb on + strand, within Ga0059261_0553at 567.560 kb on + strand, within Ga0059261_0553at 567.560 kb on + strand, within Ga0059261_0553at 567.560 kb on + strand, within Ga0059261_0553at 567.560 kb on + strand, within Ga0059261_0553at 567.560 kb on + strand, within Ga0059261_0553at 567.560 kb on + strand, within Ga0059261_0553at 567.560 kb on + strand, within Ga0059261_0553at 567.560 kb on + strand, within Ga0059261_0553at 567.561 kb on - strand, within Ga0059261_0553at 567.561 kb on - strand, within Ga0059261_0553at 567.646 kb on - strand, within Ga0059261_0553at 567.779 kb on + strand, within Ga0059261_0553at 567.779 kb on + strand, within Ga0059261_0553at 567.780 kb on - strand, within Ga0059261_0553at 567.780 kb on - strand, within Ga0059261_0553at 567.785 kb on + strand, within Ga0059261_0553at 567.785 kb on + strand, within Ga0059261_0553at 567.785 kb on + strand, within Ga0059261_0553at 567.785 kb on + strand, within Ga0059261_0553at 567.785 kb on + strand, within Ga0059261_0553at 567.785 kb on + strand, within Ga0059261_0553at 567.786 kb on - strand, within Ga0059261_0553at 567.786 kb on - strand, within Ga0059261_0553at 567.786 kb on - strand, within Ga0059261_0553at 567.944 kb on + strand, within Ga0059261_0553at 567.944 kb on + strand, within Ga0059261_0553at 567.944 kb on + strand, within Ga0059261_0553at 567.944 kb on + strand, within Ga0059261_0553at 567.945 kb on - strand, within Ga0059261_0553at 567.945 kb on - strand, within Ga0059261_0553at 567.945 kb on - strand, within Ga0059261_0553at 567.945 kb on - strand, within Ga0059261_0553at 567.945 kb on - strand, within Ga0059261_0553at 567.945 kb on - strand, within Ga0059261_0553at 567.945 kb on - strand, within Ga0059261_0553at 568.043 kb on + strand, within Ga0059261_0553at 568.043 kb on + strand, within Ga0059261_0553at 568.043 kb on + strand, within Ga0059261_0553at 568.043 kb on + strand, within Ga0059261_0553at 568.044 kb on - strand, within Ga0059261_0553at 568.044 kb on - strand, within Ga0059261_0553at 568.112 kb on + strand, within Ga0059261_0553at 568.113 kb on - strand, within Ga0059261_0553at 568.113 kb on - strand, within Ga0059261_0553at 568.152 kb on + strandat 568.153 kb on - strandat 568.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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565,112 - Ga0059261_0550 0.50 +0.8
565,461 + Ga0059261_0550 0.88 +2.1
565,461 + Ga0059261_0550 0.88 +1.8
565,461 + Ga0059261_0550 0.88 +0.7
565,462 - Ga0059261_0550 0.88 +0.6
565,462 - Ga0059261_0550 0.88 +2.0
565,598 + -1.5
565,598 + -1.4
565,598 + +2.4
565,598 + -1.0
565,599 - -0.0
565,599 - +1.4
565,742 + Ga0059261_0551 0.44 -1.5
565,742 + Ga0059261_0551 0.44 +1.6
565,743 - Ga0059261_0551 0.44 -0.5
565,779 + Ga0059261_0551 0.54 +3.8
566,172 + Ga0059261_0552 0.15 +1.7
566,172 + Ga0059261_0552 0.15 +2.8
566,176 + Ga0059261_0552 0.15 +3.3
566,176 + Ga0059261_0552 0.15 -2.3
566,176 + Ga0059261_0552 0.15 +0.4
566,177 - Ga0059261_0552 0.15 -0.2
566,177 - Ga0059261_0552 0.15 -0.9
566,177 - +2.8
566,177 - Ga0059261_0552 0.15 -0.8
566,177 - +0.8
566,196 + Ga0059261_0552 0.17 +0.5
566,664 + Ga0059261_0552 0.57 -1.9
566,664 + Ga0059261_0552 0.57 +0.8
566,675 + Ga0059261_0552 0.58 -0.1
566,675 + Ga0059261_0552 0.58 +0.2
566,675 + Ga0059261_0552 0.58 -2.2
566,676 - +1.8
566,676 - +1.8
566,740 - Ga0059261_0552 0.63 +0.5
566,748 + Ga0059261_0552 0.64 +0.8
566,749 - Ga0059261_0552 0.64 -0.0
566,749 - Ga0059261_0552 0.64 +0.5
566,749 - Ga0059261_0552 0.64 -0.7
567,255 + -0.4
567,255 + +0.5
567,255 + +1.2
567,256 - +0.1
567,256 - -1.6
567,256 - -2.0
567,342 + Ga0059261_0553 0.16 -0.2
567,344 + Ga0059261_0553 0.17 -1.6
567,344 + Ga0059261_0553 0.17 -0.8
567,345 - Ga0059261_0553 0.17 -0.8
567,345 - Ga0059261_0553 0.17 -0.5
567,345 - Ga0059261_0553 0.17 -1.1
567,345 - Ga0059261_0553 0.17 -1.5
567,350 + Ga0059261_0553 0.17 -1.4
567,350 + Ga0059261_0553 0.17 -1.2
567,350 + Ga0059261_0553 0.17 -1.9
567,372 + Ga0059261_0553 0.19 -0.2
567,440 + Ga0059261_0553 0.26 -2.0
567,441 - Ga0059261_0553 0.26 +0.5
567,449 + Ga0059261_0553 0.27 -0.0
567,449 + Ga0059261_0553 0.27 -1.2
567,449 + Ga0059261_0553 0.27 -0.8
567,449 + Ga0059261_0553 0.27 +1.6
567,449 + Ga0059261_0553 0.27 +0.0
567,449 + Ga0059261_0553 0.27 -0.3
567,450 - Ga0059261_0553 0.27 -1.1
567,490 - Ga0059261_0553 0.31 +0.4
567,490 - Ga0059261_0553 0.31 -0.5
567,490 - Ga0059261_0553 0.31 -0.0
567,490 - Ga0059261_0553 0.31 +0.4
567,518 + Ga0059261_0553 0.33 +0.2
567,539 + Ga0059261_0553 0.35 +1.0
567,560 + Ga0059261_0553 0.37 -0.5
567,560 + Ga0059261_0553 0.37 -1.3
567,560 + Ga0059261_0553 0.37 +0.4
567,560 + Ga0059261_0553 0.37 -1.3
567,560 + Ga0059261_0553 0.37 -1.1
567,560 + Ga0059261_0553 0.37 -2.3
567,560 + Ga0059261_0553 0.37 -0.4
567,560 + Ga0059261_0553 0.37 -0.6
567,560 + Ga0059261_0553 0.37 +1.8
567,561 - Ga0059261_0553 0.37 -1.7
567,561 - Ga0059261_0553 0.37 +3.5
567,646 - Ga0059261_0553 0.45 -1.2
567,779 + Ga0059261_0553 0.58 -1.7
567,779 + Ga0059261_0553 0.58 -1.5
567,780 - Ga0059261_0553 0.58 -0.3
567,780 - Ga0059261_0553 0.58 -1.0
567,785 + Ga0059261_0553 0.59 -1.2
567,785 + Ga0059261_0553 0.59 +0.1
567,785 + Ga0059261_0553 0.59 -1.2
567,785 + Ga0059261_0553 0.59 +0.5
567,785 + Ga0059261_0553 0.59 -1.1
567,785 + Ga0059261_0553 0.59 +0.1
567,786 - Ga0059261_0553 0.59 -0.9
567,786 - Ga0059261_0553 0.59 +1.2
567,786 - Ga0059261_0553 0.59 +3.4
567,944 + Ga0059261_0553 0.74 -1.0
567,944 + Ga0059261_0553 0.74 +1.2
567,944 + Ga0059261_0553 0.74 +1.2
567,944 + Ga0059261_0553 0.74 -0.0
567,945 - Ga0059261_0553 0.74 -0.2
567,945 - Ga0059261_0553 0.74 +1.1
567,945 - Ga0059261_0553 0.74 +0.5
567,945 - Ga0059261_0553 0.74 +3.5
567,945 - Ga0059261_0553 0.74 -0.2
567,945 - Ga0059261_0553 0.74 +0.5
567,945 - Ga0059261_0553 0.74 +0.2
568,043 + Ga0059261_0553 0.83 -0.4
568,043 + Ga0059261_0553 0.83 +0.8
568,043 + Ga0059261_0553 0.83 -1.0
568,043 + Ga0059261_0553 0.83 -2.7
568,044 - Ga0059261_0553 0.83 +0.4
568,044 - Ga0059261_0553 0.83 +0.5
568,112 + Ga0059261_0553 0.90 +0.0
568,113 - Ga0059261_0553 0.90 -0.7
568,113 - Ga0059261_0553 0.90 -0.0
568,152 + -0.0
568,153 - +0.5
568,153 - -1.1

Or see this region's nucleotide sequence