Experiment: LB_Aerobic_180MIN_ZN14B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19130 and CSW01_19135 are separated by 115 nucleotides CSW01_19135 and CSW01_19140 are separated by 96 nucleotides CSW01_19140 and CSW01_19145 are separated by 255 nucleotides
CSW01_19130: CSW01_19130 - FAA hydrolase family protein, at 955,390 to 956,004
_19130
CSW01_19135: CSW01_19135 - MarR family transcriptional regulator, at 956,120 to 956,578
_19135
CSW01_19140: CSW01_19140 - organic hydroperoxide resistance protein, at 956,675 to 957,112
_19140
CSW01_19145: CSW01_19145 - porin, at 957,368 to 958,363
_19145
Position (kb) 956
957
958 Strain fitness (log2 ratio) -2
-1
0
1
2 at 955.682 kb on - strand, within CSW01_19130 at 955.723 kb on - strand, within CSW01_19130 at 955.723 kb on - strand, within CSW01_19130 at 955.732 kb on + strand, within CSW01_19130 at 955.733 kb on - strand, within CSW01_19130 at 955.735 kb on - strand, within CSW01_19130 at 955.815 kb on - strand, within CSW01_19130 at 955.852 kb on - strand, within CSW01_19130 at 955.868 kb on + strand, within CSW01_19130 at 955.868 kb on + strand, within CSW01_19130 at 955.876 kb on - strand, within CSW01_19130 at 955.917 kb on - strand, within CSW01_19130 at 955.942 kb on - strand, within CSW01_19130 at 956.000 kb on - strand at 956.011 kb on + strand at 956.019 kb on - strand at 956.173 kb on + strand, within CSW01_19135 at 956.181 kb on - strand, within CSW01_19135 at 956.181 kb on - strand, within CSW01_19135 at 956.181 kb on - strand, within CSW01_19135 at 956.220 kb on - strand, within CSW01_19135 at 956.220 kb on - strand, within CSW01_19135 at 956.222 kb on + strand, within CSW01_19135 at 956.222 kb on + strand, within CSW01_19135 at 956.225 kb on - strand, within CSW01_19135 at 956.261 kb on - strand, within CSW01_19135 at 956.419 kb on + strand, within CSW01_19135 at 956.472 kb on + strand, within CSW01_19135 at 956.472 kb on + strand, within CSW01_19135 at 956.503 kb on + strand, within CSW01_19135 at 956.503 kb on - strand, within CSW01_19135 at 956.506 kb on - strand, within CSW01_19135 at 956.574 kb on + strand at 956.582 kb on - strand at 956.582 kb on - strand at 956.729 kb on + strand, within CSW01_19140 at 956.729 kb on - strand, within CSW01_19140 at 956.731 kb on + strand, within CSW01_19140 at 956.742 kb on - strand, within CSW01_19140 at 956.742 kb on - strand, within CSW01_19140 at 956.743 kb on + strand, within CSW01_19140 at 956.806 kb on - strand, within CSW01_19140 at 956.828 kb on - strand, within CSW01_19140 at 956.844 kb on + strand, within CSW01_19140 at 956.850 kb on - strand, within CSW01_19140 at 956.948 kb on + strand, within CSW01_19140 at 956.978 kb on - strand, within CSW01_19140 at 956.978 kb on - strand, within CSW01_19140 at 957.035 kb on - strand, within CSW01_19140 at 957.035 kb on - strand, within CSW01_19140 at 957.040 kb on + strand, within CSW01_19140 at 957.040 kb on + strand, within CSW01_19140 at 957.045 kb on + strand, within CSW01_19140 at 957.048 kb on - strand, within CSW01_19140 at 957.060 kb on - strand, within CSW01_19140 at 957.072 kb on + strand at 957.075 kb on - strand at 957.088 kb on - strand at 957.098 kb on + strand at 957.099 kb on + strand at 957.099 kb on + strand at 957.214 kb on - strand at 957.319 kb on - strand at 957.416 kb on + strand at 957.424 kb on - strand at 957.430 kb on - strand at 957.485 kb on - strand, within CSW01_19145 at 957.516 kb on - strand, within CSW01_19145 at 957.531 kb on + strand, within CSW01_19145 at 957.618 kb on + strand, within CSW01_19145 at 957.729 kb on - strand, within CSW01_19145 at 957.803 kb on + strand, within CSW01_19145 at 957.803 kb on + strand, within CSW01_19145 at 957.803 kb on + strand, within CSW01_19145 at 957.803 kb on + strand, within CSW01_19145 at 957.811 kb on - strand, within CSW01_19145 at 957.813 kb on + strand, within CSW01_19145 at 957.821 kb on - strand, within CSW01_19145 at 957.851 kb on + strand, within CSW01_19145 at 957.918 kb on + strand, within CSW01_19145 at 957.918 kb on + strand, within CSW01_19145 at 957.936 kb on - strand, within CSW01_19145 at 957.965 kb on + strand, within CSW01_19145 at 957.978 kb on - strand, within CSW01_19145 at 957.996 kb on + strand, within CSW01_19145 at 957.997 kb on + strand, within CSW01_19145 at 958.033 kb on + strand, within CSW01_19145 at 958.033 kb on + strand, within CSW01_19145 at 958.041 kb on - strand, within CSW01_19145 at 958.041 kb on - strand, within CSW01_19145 at 958.041 kb on - strand, within CSW01_19145 at 958.080 kb on - strand, within CSW01_19145
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B remove 955,682 - CSW01_19130 0.47 -0.5 955,723 - CSW01_19130 0.54 -0.1 955,723 - CSW01_19130 0.54 -0.9 955,732 + CSW01_19130 0.56 +1.5 955,733 - CSW01_19130 0.56 -1.5 955,735 - CSW01_19130 0.56 -0.1 955,815 - CSW01_19130 0.69 -1.2 955,852 - CSW01_19130 0.75 -0.1 955,868 + CSW01_19130 0.78 +1.7 955,868 + CSW01_19130 0.78 -0.2 955,876 - CSW01_19130 0.79 +0.2 955,917 - CSW01_19130 0.86 -0.3 955,942 - CSW01_19130 0.90 -0.4 956,000 - +0.7 956,011 + -0.3 956,019 - +0.4 956,173 + CSW01_19135 0.12 -0.4 956,181 - CSW01_19135 0.13 -0.3 956,181 - CSW01_19135 0.13 +0.8 956,181 - CSW01_19135 0.13 +0.4 956,220 - CSW01_19135 0.22 +0.1 956,220 - CSW01_19135 0.22 +0.6 956,222 + CSW01_19135 0.22 -0.6 956,222 + CSW01_19135 0.22 +0.5 956,225 - CSW01_19135 0.23 -0.1 956,261 - CSW01_19135 0.31 +0.5 956,419 + CSW01_19135 0.65 +0.7 956,472 + CSW01_19135 0.77 -0.5 956,472 + CSW01_19135 0.77 +0.1 956,503 + CSW01_19135 0.83 -0.8 956,503 - CSW01_19135 0.83 -0.8 956,506 - CSW01_19135 0.84 +0.2 956,574 + -0.1 956,582 - +0.1 956,582 - +0.2 956,729 + CSW01_19140 0.12 -1.2 956,729 - CSW01_19140 0.12 -0.2 956,731 + CSW01_19140 0.13 -1.0 956,742 - CSW01_19140 0.15 +0.2 956,742 - CSW01_19140 0.15 +0.0 956,743 + CSW01_19140 0.16 +0.2 956,806 - CSW01_19140 0.30 +0.1 956,828 - CSW01_19140 0.35 +0.4 956,844 + CSW01_19140 0.39 -0.6 956,850 - CSW01_19140 0.40 -2.2 956,948 + CSW01_19140 0.62 -0.8 956,978 - CSW01_19140 0.69 +0.0 956,978 - CSW01_19140 0.69 -0.3 957,035 - CSW01_19140 0.82 -0.6 957,035 - CSW01_19140 0.82 -0.3 957,040 + CSW01_19140 0.83 +0.8 957,040 + CSW01_19140 0.83 -0.9 957,045 + CSW01_19140 0.84 -0.3 957,048 - CSW01_19140 0.85 -0.2 957,060 - CSW01_19140 0.88 -0.3 957,072 + -1.5 957,075 - +0.8 957,088 - -0.1 957,098 + +0.0 957,099 + +0.1 957,099 + +0.5 957,214 - +0.3 957,319 - -0.2 957,416 + -0.3 957,424 - -0.2 957,430 - +0.8 957,485 - CSW01_19145 0.12 +0.7 957,516 - CSW01_19145 0.15 -0.0 957,531 + CSW01_19145 0.16 -0.6 957,618 + CSW01_19145 0.25 -0.2 957,729 - CSW01_19145 0.36 -0.1 957,803 + CSW01_19145 0.44 +1.8 957,803 + CSW01_19145 0.44 -0.9 957,803 + CSW01_19145 0.44 -0.6 957,803 + CSW01_19145 0.44 -0.5 957,811 - CSW01_19145 0.44 -0.9 957,813 + CSW01_19145 0.45 -1.3 957,821 - CSW01_19145 0.45 -1.2 957,851 + CSW01_19145 0.48 +0.8 957,918 + CSW01_19145 0.55 -0.1 957,918 + CSW01_19145 0.55 -0.2 957,936 - CSW01_19145 0.57 -1.2 957,965 + CSW01_19145 0.60 +0.7 957,978 - CSW01_19145 0.61 -0.5 957,996 + CSW01_19145 0.63 +0.7 957,997 + CSW01_19145 0.63 +0.2 958,033 + CSW01_19145 0.67 +1.1 958,033 + CSW01_19145 0.67 -0.6 958,041 - CSW01_19145 0.68 -1.0 958,041 - CSW01_19145 0.68 +0.1 958,041 - CSW01_19145 0.68 -0.1 958,080 - CSW01_19145 0.71 +0.7
Or see this region's nucleotide sequence