Experiment: LB_Aerobic_180MIN_ZN14B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18350 and CSW01_18355 are separated by 655 nucleotides CSW01_18355 and CSW01_18360 are separated by 300 nucleotides CSW01_18360 and CSW01_18365 are separated by 48 nucleotides
CSW01_18350: CSW01_18350 - cell division protein DedD, at 782,773 to 783,258
_18350
CSW01_18355: CSW01_18355 - aldehyde dehydrogenase, at 783,914 to 785,443
_18355
CSW01_18360: CSW01_18360 - hypothetical protein, at 785,744 to 785,968
_18360
CSW01_18365: CSW01_18365 - LysE family translocator, at 786,017 to 786,631
_18365
Position (kb)
783
784
785
786 Strain fitness (log2 ratio)
-1
0
1
2 at 783.088 kb on + strand, within CSW01_18350 at 783.279 kb on - strand at 783.304 kb on - strand at 783.434 kb on - strand at 783.484 kb on + strand at 783.484 kb on + strand at 783.492 kb on - strand at 783.492 kb on - strand at 783.492 kb on - strand at 783.579 kb on + strand at 783.589 kb on + strand at 783.597 kb on - strand at 783.617 kb on - strand at 783.779 kb on + strand at 783.779 kb on + strand at 783.784 kb on + strand at 783.787 kb on - strand at 783.792 kb on - strand at 783.817 kb on + strand at 783.822 kb on + strand at 783.829 kb on + strand at 783.856 kb on - strand at 783.906 kb on + strand at 783.914 kb on - strand at 783.914 kb on - strand at 784.051 kb on - strand at 784.110 kb on - strand, within CSW01_18355 at 784.140 kb on - strand, within CSW01_18355 at 784.156 kb on + strand, within CSW01_18355 at 784.164 kb on - strand, within CSW01_18355 at 784.164 kb on - strand, within CSW01_18355 at 784.164 kb on - strand, within CSW01_18355 at 784.185 kb on + strand, within CSW01_18355 at 784.214 kb on + strand, within CSW01_18355 at 784.214 kb on + strand, within CSW01_18355 at 784.214 kb on + strand, within CSW01_18355 at 784.222 kb on - strand, within CSW01_18355 at 784.234 kb on - strand, within CSW01_18355 at 784.375 kb on - strand, within CSW01_18355 at 784.407 kb on - strand, within CSW01_18355 at 784.460 kb on + strand, within CSW01_18355 at 784.481 kb on - strand, within CSW01_18355 at 784.542 kb on - strand, within CSW01_18355 at 784.686 kb on - strand, within CSW01_18355 at 784.727 kb on + strand, within CSW01_18355 at 784.728 kb on + strand, within CSW01_18355 at 784.728 kb on + strand, within CSW01_18355 at 784.736 kb on - strand, within CSW01_18355 at 784.741 kb on + strand, within CSW01_18355 at 784.741 kb on - strand, within CSW01_18355 at 784.774 kb on - strand, within CSW01_18355 at 784.783 kb on + strand, within CSW01_18355 at 784.783 kb on + strand, within CSW01_18355 at 784.791 kb on - strand, within CSW01_18355 at 784.791 kb on - strand, within CSW01_18355 at 784.926 kb on + strand, within CSW01_18355 at 784.926 kb on + strand, within CSW01_18355 at 784.926 kb on + strand, within CSW01_18355 at 784.926 kb on + strand, within CSW01_18355 at 784.934 kb on - strand, within CSW01_18355 at 784.994 kb on + strand, within CSW01_18355 at 785.025 kb on + strand, within CSW01_18355 at 785.033 kb on - strand, within CSW01_18355 at 785.121 kb on + strand, within CSW01_18355 at 785.164 kb on + strand, within CSW01_18355 at 785.164 kb on + strand, within CSW01_18355 at 785.175 kb on + strand, within CSW01_18355 at 785.317 kb on - strand at 785.384 kb on + strand at 785.384 kb on + strand at 785.404 kb on + strand at 785.404 kb on + strand at 785.404 kb on + strand at 785.404 kb on + strand at 785.407 kb on - strand at 785.412 kb on - strand at 785.424 kb on - strand at 785.452 kb on + strand at 785.460 kb on - strand at 785.462 kb on + strand at 785.490 kb on - strand at 785.492 kb on - strand at 785.537 kb on + strand at 785.578 kb on + strand at 785.578 kb on + strand at 785.586 kb on - strand at 785.718 kb on - strand at 785.763 kb on + strand at 785.770 kb on - strand, within CSW01_18360 at 785.786 kb on - strand, within CSW01_18360 at 785.793 kb on + strand, within CSW01_18360 at 785.984 kb on + strand at 785.991 kb on - strand at 785.991 kb on - strand at 785.995 kb on + strand at 786.003 kb on - strand at 786.003 kb on - strand at 786.014 kb on + strand at 786.014 kb on + strand at 786.022 kb on - strand at 786.060 kb on + strand at 786.131 kb on - strand, within CSW01_18365 at 786.240 kb on + strand, within CSW01_18365 at 786.301 kb on + strand, within CSW01_18365 at 786.411 kb on + strand, within CSW01_18365 at 786.419 kb on + strand, within CSW01_18365
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B remove 783,088 + CSW01_18350 0.65 -0.8 783,279 - +0.1 783,304 - -0.5 783,434 - -0.1 783,484 + -0.2 783,484 + -0.9 783,492 - -0.9 783,492 - -0.9 783,492 - -0.0 783,579 + +0.6 783,589 + -0.3 783,597 - +0.1 783,617 - +0.2 783,779 + +0.4 783,779 + -1.3 783,784 + +0.5 783,787 - +1.1 783,792 - +0.3 783,817 + +0.2 783,822 + -0.1 783,829 + +1.1 783,856 - -0.0 783,906 + +0.6 783,914 - -0.5 783,914 - -0.4 784,051 - -0.9 784,110 - CSW01_18355 0.13 +0.5 784,140 - CSW01_18355 0.15 -0.4 784,156 + CSW01_18355 0.16 +0.9 784,164 - CSW01_18355 0.16 +0.2 784,164 - CSW01_18355 0.16 -0.5 784,164 - CSW01_18355 0.16 +1.1 784,185 + CSW01_18355 0.18 +0.3 784,214 + CSW01_18355 0.20 -0.8 784,214 + CSW01_18355 0.20 -0.4 784,214 + CSW01_18355 0.20 -0.0 784,222 - CSW01_18355 0.20 +2.2 784,234 - CSW01_18355 0.21 +0.7 784,375 - CSW01_18355 0.30 +0.2 784,407 - CSW01_18355 0.32 +0.2 784,460 + CSW01_18355 0.36 -1.1 784,481 - CSW01_18355 0.37 +1.0 784,542 - CSW01_18355 0.41 -0.2 784,686 - CSW01_18355 0.50 +0.3 784,727 + CSW01_18355 0.53 +0.2 784,728 + CSW01_18355 0.53 -0.0 784,728 + CSW01_18355 0.53 +0.2 784,736 - CSW01_18355 0.54 -0.2 784,741 + CSW01_18355 0.54 +1.2 784,741 - CSW01_18355 0.54 +0.1 784,774 - CSW01_18355 0.56 -0.9 784,783 + CSW01_18355 0.57 +0.2 784,783 + CSW01_18355 0.57 +0.4 784,791 - CSW01_18355 0.57 +1.1 784,791 - CSW01_18355 0.57 +0.5 784,926 + CSW01_18355 0.66 +0.4 784,926 + CSW01_18355 0.66 -0.6 784,926 + CSW01_18355 0.66 +0.8 784,926 + CSW01_18355 0.66 +0.5 784,934 - CSW01_18355 0.67 +0.3 784,994 + CSW01_18355 0.71 +0.1 785,025 + CSW01_18355 0.73 +0.7 785,033 - CSW01_18355 0.73 +0.7 785,121 + CSW01_18355 0.79 +0.3 785,164 + CSW01_18355 0.82 -0.4 785,164 + CSW01_18355 0.82 -0.2 785,175 + CSW01_18355 0.82 -0.5 785,317 - -0.9 785,384 + -1.2 785,384 + -0.6 785,404 + +0.4 785,404 + +0.2 785,404 + +0.4 785,404 + +0.9 785,407 - +0.3 785,412 - -0.1 785,424 - -0.2 785,452 + -1.4 785,460 - -0.1 785,462 + +0.4 785,490 - -0.4 785,492 - +1.5 785,537 + -0.1 785,578 + -0.1 785,578 + +0.1 785,586 - +0.8 785,718 - +0.0 785,763 + -0.4 785,770 - CSW01_18360 0.12 +0.2 785,786 - CSW01_18360 0.19 +1.0 785,793 + CSW01_18360 0.22 +0.6 785,984 + -0.2 785,991 - -0.2 785,991 - +0.2 785,995 + +1.1 786,003 - +0.1 786,003 - +0.6 786,014 + +1.2 786,014 + -1.4 786,022 - -0.2 786,060 + -1.2 786,131 - CSW01_18365 0.19 +0.7 786,240 + CSW01_18365 0.36 -0.6 786,301 + CSW01_18365 0.46 -0.5 786,411 + CSW01_18365 0.64 +0.5 786,419 + CSW01_18365 0.65 -0.2
Or see this region's nucleotide sequence