Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18355

Experiment: LB_Aerobic_180MIN_ZN14B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18350 and CSW01_18355 are separated by 655 nucleotidesCSW01_18355 and CSW01_18360 are separated by 300 nucleotidesCSW01_18360 and CSW01_18365 are separated by 48 nucleotides CSW01_18350: CSW01_18350 - cell division protein DedD, at 782,773 to 783,258 _18350 CSW01_18355: CSW01_18355 - aldehyde dehydrogenase, at 783,914 to 785,443 _18355 CSW01_18360: CSW01_18360 - hypothetical protein, at 785,744 to 785,968 _18360 CSW01_18365: CSW01_18365 - LysE family translocator, at 786,017 to 786,631 _18365 Position (kb) 783 784 785 786Strain fitness (log2 ratio) -1 0 1 2at 783.088 kb on + strand, within CSW01_18350at 783.279 kb on - strandat 783.304 kb on - strandat 783.434 kb on - strandat 783.484 kb on + strandat 783.484 kb on + strandat 783.492 kb on - strandat 783.492 kb on - strandat 783.492 kb on - strandat 783.579 kb on + strandat 783.589 kb on + strandat 783.597 kb on - strandat 783.617 kb on - strandat 783.779 kb on + strandat 783.779 kb on + strandat 783.784 kb on + strandat 783.787 kb on - strandat 783.792 kb on - strandat 783.817 kb on + strandat 783.822 kb on + strandat 783.829 kb on + strandat 783.856 kb on - strandat 783.906 kb on + strandat 783.914 kb on - strandat 783.914 kb on - strandat 784.051 kb on - strandat 784.110 kb on - strand, within CSW01_18355at 784.140 kb on - strand, within CSW01_18355at 784.156 kb on + strand, within CSW01_18355at 784.164 kb on - strand, within CSW01_18355at 784.164 kb on - strand, within CSW01_18355at 784.164 kb on - strand, within CSW01_18355at 784.185 kb on + strand, within CSW01_18355at 784.214 kb on + strand, within CSW01_18355at 784.214 kb on + strand, within CSW01_18355at 784.214 kb on + strand, within CSW01_18355at 784.222 kb on - strand, within CSW01_18355at 784.234 kb on - strand, within CSW01_18355at 784.375 kb on - strand, within CSW01_18355at 784.407 kb on - strand, within CSW01_18355at 784.460 kb on + strand, within CSW01_18355at 784.481 kb on - strand, within CSW01_18355at 784.542 kb on - strand, within CSW01_18355at 784.686 kb on - strand, within CSW01_18355at 784.727 kb on + strand, within CSW01_18355at 784.728 kb on + strand, within CSW01_18355at 784.728 kb on + strand, within CSW01_18355at 784.736 kb on - strand, within CSW01_18355at 784.741 kb on + strand, within CSW01_18355at 784.741 kb on - strand, within CSW01_18355at 784.774 kb on - strand, within CSW01_18355at 784.783 kb on + strand, within CSW01_18355at 784.783 kb on + strand, within CSW01_18355at 784.791 kb on - strand, within CSW01_18355at 784.791 kb on - strand, within CSW01_18355at 784.926 kb on + strand, within CSW01_18355at 784.926 kb on + strand, within CSW01_18355at 784.926 kb on + strand, within CSW01_18355at 784.926 kb on + strand, within CSW01_18355at 784.934 kb on - strand, within CSW01_18355at 784.994 kb on + strand, within CSW01_18355at 785.025 kb on + strand, within CSW01_18355at 785.033 kb on - strand, within CSW01_18355at 785.121 kb on + strand, within CSW01_18355at 785.164 kb on + strand, within CSW01_18355at 785.164 kb on + strand, within CSW01_18355at 785.175 kb on + strand, within CSW01_18355at 785.317 kb on - strandat 785.384 kb on + strandat 785.384 kb on + strandat 785.404 kb on + strandat 785.404 kb on + strandat 785.404 kb on + strandat 785.404 kb on + strandat 785.407 kb on - strandat 785.412 kb on - strandat 785.424 kb on - strandat 785.452 kb on + strandat 785.460 kb on - strandat 785.462 kb on + strandat 785.490 kb on - strandat 785.492 kb on - strandat 785.537 kb on + strandat 785.578 kb on + strandat 785.578 kb on + strandat 785.586 kb on - strandat 785.718 kb on - strandat 785.763 kb on + strandat 785.770 kb on - strand, within CSW01_18360at 785.786 kb on - strand, within CSW01_18360at 785.793 kb on + strand, within CSW01_18360at 785.984 kb on + strandat 785.991 kb on - strandat 785.991 kb on - strandat 785.995 kb on + strandat 786.003 kb on - strandat 786.003 kb on - strandat 786.014 kb on + strandat 786.014 kb on + strandat 786.022 kb on - strandat 786.060 kb on + strandat 786.131 kb on - strand, within CSW01_18365at 786.240 kb on + strand, within CSW01_18365at 786.301 kb on + strand, within CSW01_18365at 786.411 kb on + strand, within CSW01_18365at 786.419 kb on + strand, within CSW01_18365

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B
remove
783,088 + CSW01_18350 0.65 -0.8
783,279 - +0.1
783,304 - -0.5
783,434 - -0.1
783,484 + -0.2
783,484 + -0.9
783,492 - -0.9
783,492 - -0.9
783,492 - -0.0
783,579 + +0.6
783,589 + -0.3
783,597 - +0.1
783,617 - +0.2
783,779 + +0.4
783,779 + -1.3
783,784 + +0.5
783,787 - +1.1
783,792 - +0.3
783,817 + +0.2
783,822 + -0.1
783,829 + +1.1
783,856 - -0.0
783,906 + +0.6
783,914 - -0.5
783,914 - -0.4
784,051 - -0.9
784,110 - CSW01_18355 0.13 +0.5
784,140 - CSW01_18355 0.15 -0.4
784,156 + CSW01_18355 0.16 +0.9
784,164 - CSW01_18355 0.16 +0.2
784,164 - CSW01_18355 0.16 -0.5
784,164 - CSW01_18355 0.16 +1.1
784,185 + CSW01_18355 0.18 +0.3
784,214 + CSW01_18355 0.20 -0.8
784,214 + CSW01_18355 0.20 -0.4
784,214 + CSW01_18355 0.20 -0.0
784,222 - CSW01_18355 0.20 +2.2
784,234 - CSW01_18355 0.21 +0.7
784,375 - CSW01_18355 0.30 +0.2
784,407 - CSW01_18355 0.32 +0.2
784,460 + CSW01_18355 0.36 -1.1
784,481 - CSW01_18355 0.37 +1.0
784,542 - CSW01_18355 0.41 -0.2
784,686 - CSW01_18355 0.50 +0.3
784,727 + CSW01_18355 0.53 +0.2
784,728 + CSW01_18355 0.53 -0.0
784,728 + CSW01_18355 0.53 +0.2
784,736 - CSW01_18355 0.54 -0.2
784,741 + CSW01_18355 0.54 +1.2
784,741 - CSW01_18355 0.54 +0.1
784,774 - CSW01_18355 0.56 -0.9
784,783 + CSW01_18355 0.57 +0.2
784,783 + CSW01_18355 0.57 +0.4
784,791 - CSW01_18355 0.57 +1.1
784,791 - CSW01_18355 0.57 +0.5
784,926 + CSW01_18355 0.66 +0.4
784,926 + CSW01_18355 0.66 -0.6
784,926 + CSW01_18355 0.66 +0.8
784,926 + CSW01_18355 0.66 +0.5
784,934 - CSW01_18355 0.67 +0.3
784,994 + CSW01_18355 0.71 +0.1
785,025 + CSW01_18355 0.73 +0.7
785,033 - CSW01_18355 0.73 +0.7
785,121 + CSW01_18355 0.79 +0.3
785,164 + CSW01_18355 0.82 -0.4
785,164 + CSW01_18355 0.82 -0.2
785,175 + CSW01_18355 0.82 -0.5
785,317 - -0.9
785,384 + -1.2
785,384 + -0.6
785,404 + +0.4
785,404 + +0.2
785,404 + +0.4
785,404 + +0.9
785,407 - +0.3
785,412 - -0.1
785,424 - -0.2
785,452 + -1.4
785,460 - -0.1
785,462 + +0.4
785,490 - -0.4
785,492 - +1.5
785,537 + -0.1
785,578 + -0.1
785,578 + +0.1
785,586 - +0.8
785,718 - +0.0
785,763 + -0.4
785,770 - CSW01_18360 0.12 +0.2
785,786 - CSW01_18360 0.19 +1.0
785,793 + CSW01_18360 0.22 +0.6
785,984 + -0.2
785,991 - -0.2
785,991 - +0.2
785,995 + +1.1
786,003 - +0.1
786,003 - +0.6
786,014 + +1.2
786,014 + -1.4
786,022 - -0.2
786,060 + -1.2
786,131 - CSW01_18365 0.19 +0.7
786,240 + CSW01_18365 0.36 -0.6
786,301 + CSW01_18365 0.46 -0.5
786,411 + CSW01_18365 0.64 +0.5
786,419 + CSW01_18365 0.65 -0.2

Or see this region's nucleotide sequence