Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18345

Experiment: LB_Aerobic_180MIN_ZN14B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18340 and CSW01_18345 are separated by 154 nucleotidesCSW01_18345 and CSW01_18350 are separated by 892 nucleotides CSW01_18340: CSW01_18340 - HlyC/CorC family transporter, at 780,008 to 781,321 _18340 CSW01_18345: CSW01_18345 - osmotically inducible protein OsmC, at 781,476 to 781,880 _18345 CSW01_18350: CSW01_18350 - cell division protein DedD, at 782,773 to 783,258 _18350 Position (kb) 781 782Strain fitness (log2 ratio) -2 -1 0 1 2at 780.533 kb on - strand, within CSW01_18340at 780.543 kb on + strand, within CSW01_18340at 780.544 kb on - strand, within CSW01_18340at 780.545 kb on - strand, within CSW01_18340at 780.551 kb on - strand, within CSW01_18340at 780.562 kb on + strand, within CSW01_18340at 780.570 kb on - strand, within CSW01_18340at 780.645 kb on - strand, within CSW01_18340at 780.697 kb on - strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.737 kb on - strand, within CSW01_18340at 780.737 kb on - strand, within CSW01_18340at 780.737 kb on - strand, within CSW01_18340at 780.776 kb on + strand, within CSW01_18340at 780.781 kb on + strand, within CSW01_18340at 780.781 kb on + strand, within CSW01_18340at 780.794 kb on - strand, within CSW01_18340at 780.900 kb on + strand, within CSW01_18340at 780.994 kb on + strand, within CSW01_18340at 781.002 kb on - strand, within CSW01_18340at 781.002 kb on - strand, within CSW01_18340at 781.006 kb on + strand, within CSW01_18340at 781.059 kb on + strand, within CSW01_18340at 781.064 kb on + strand, within CSW01_18340at 781.064 kb on + strand, within CSW01_18340at 781.064 kb on + strand, within CSW01_18340at 781.067 kb on - strand, within CSW01_18340at 781.067 kb on - strand, within CSW01_18340at 781.067 kb on - strand, within CSW01_18340at 781.067 kb on - strand, within CSW01_18340at 781.072 kb on - strand, within CSW01_18340at 781.072 kb on - strand, within CSW01_18340at 781.418 kb on + strandat 781.442 kb on + strandat 781.473 kb on + strandat 781.516 kb on - strandat 781.516 kb on - strandat 781.650 kb on + strand, within CSW01_18345at 781.667 kb on - strand, within CSW01_18345at 781.679 kb on - strand, within CSW01_18345at 781.679 kb on - strand, within CSW01_18345at 781.689 kb on - strand, within CSW01_18345at 781.689 kb on - strand, within CSW01_18345at 781.740 kb on + strand, within CSW01_18345at 781.740 kb on + strand, within CSW01_18345at 781.740 kb on + strand, within CSW01_18345at 781.853 kb on + strandat 782.029 kb on + strandat 782.062 kb on + strandat 782.067 kb on + strandat 782.070 kb on - strandat 782.220 kb on - strandat 782.237 kb on + strandat 782.285 kb on - strandat 782.548 kb on - strandat 782.597 kb on + strandat 782.597 kb on + strandat 782.605 kb on - strandat 782.605 kb on - strandat 782.665 kb on + strandat 782.673 kb on - strandat 782.686 kb on + strandat 782.704 kb on - strandat 782.713 kb on + strandat 782.743 kb on - strandat 782.831 kb on + strand, within CSW01_18350at 782.858 kb on - strand, within CSW01_18350at 782.868 kb on - strand, within CSW01_18350

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B
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780,533 - CSW01_18340 0.40 +0.6
780,543 + CSW01_18340 0.41 -0.8
780,544 - CSW01_18340 0.41 -0.0
780,545 - CSW01_18340 0.41 -0.7
780,551 - CSW01_18340 0.41 -0.6
780,562 + CSW01_18340 0.42 +0.2
780,570 - CSW01_18340 0.43 -0.1
780,645 - CSW01_18340 0.48 +0.4
780,697 - CSW01_18340 0.52 -0.6
780,729 + CSW01_18340 0.55 +1.4
780,729 + CSW01_18340 0.55 -0.6
780,729 + CSW01_18340 0.55 +0.7
780,729 + CSW01_18340 0.55 +0.5
780,729 + CSW01_18340 0.55 +1.0
780,737 - CSW01_18340 0.55 -1.8
780,737 - CSW01_18340 0.55 -0.1
780,737 - CSW01_18340 0.55 +1.2
780,776 + CSW01_18340 0.58 -0.3
780,781 + CSW01_18340 0.59 -0.4
780,781 + CSW01_18340 0.59 +0.5
780,794 - CSW01_18340 0.60 +0.4
780,900 + CSW01_18340 0.68 -0.3
780,994 + CSW01_18340 0.75 +0.9
781,002 - CSW01_18340 0.76 +0.0
781,002 - CSW01_18340 0.76 +1.7
781,006 + CSW01_18340 0.76 -0.9
781,059 + CSW01_18340 0.80 -0.4
781,064 + CSW01_18340 0.80 +0.2
781,064 + CSW01_18340 0.80 -1.3
781,064 + CSW01_18340 0.80 +0.0
781,067 - CSW01_18340 0.81 +0.4
781,067 - CSW01_18340 0.81 -0.7
781,067 - CSW01_18340 0.81 +0.2
781,067 - CSW01_18340 0.81 +0.5
781,072 - CSW01_18340 0.81 +1.8
781,072 - CSW01_18340 0.81 +0.2
781,418 + +0.7
781,442 + +0.0
781,473 + -0.8
781,516 - +0.1
781,516 - +0.3
781,650 + CSW01_18345 0.43 -0.1
781,667 - CSW01_18345 0.47 +0.9
781,679 - CSW01_18345 0.50 +1.4
781,679 - CSW01_18345 0.50 +0.6
781,689 - CSW01_18345 0.53 +0.1
781,689 - CSW01_18345 0.53 -0.6
781,740 + CSW01_18345 0.65 +0.9
781,740 + CSW01_18345 0.65 +0.0
781,740 + CSW01_18345 0.65 +0.0
781,853 + +0.3
782,029 + +0.3
782,062 + -0.1
782,067 + -0.6
782,070 - +0.5
782,220 - -0.7
782,237 + -0.6
782,285 - +0.0
782,548 - +0.1
782,597 + +0.5
782,597 + +0.3
782,605 - +0.4
782,605 - -1.4
782,665 + +0.2
782,673 - +0.6
782,686 + -1.4
782,704 - -0.3
782,713 + -0.6
782,743 - +0.7
782,831 + CSW01_18350 0.12 -2.2
782,858 - CSW01_18350 0.17 +0.2
782,868 - CSW01_18350 0.20 -0.8

Or see this region's nucleotide sequence