Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17975

Experiment: LB_Aerobic_180MIN_ZN14B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17965 and CSW01_17970 overlap by 4 nucleotidesCSW01_17970 and CSW01_17975 are separated by 1 nucleotidesCSW01_17975 and CSW01_17980 are separated by 73 nucleotides CSW01_17965: CSW01_17965 - arginine transporter permease subunit ArtM, at 699,781 to 700,449 _17965 CSW01_17970: CSW01_17970 - ABC transporter, at 700,446 to 701,135 _17970 CSW01_17975: CSW01_17975 - arginine ABC transporter substrate-binding protein, at 701,137 to 701,868 _17975 CSW01_17980: CSW01_17980 - arginine ABC transporter ATP-binding protein ArtP, at 701,942 to 702,670 _17980 Position (kb) 701 702Strain fitness (log2 ratio) -1 0 1 2at 700.148 kb on - strand, within CSW01_17965at 700.220 kb on + strand, within CSW01_17965at 700.228 kb on - strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.230 kb on + strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.238 kb on - strand, within CSW01_17965at 700.288 kb on + strand, within CSW01_17965at 700.296 kb on - strand, within CSW01_17965at 700.301 kb on + strand, within CSW01_17965at 700.302 kb on + strand, within CSW01_17965at 700.332 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.339 kb on + strand, within CSW01_17965at 700.348 kb on + strand, within CSW01_17965at 700.354 kb on - strand, within CSW01_17965at 700.403 kb on - strandat 700.455 kb on + strandat 700.553 kb on - strand, within CSW01_17970at 700.575 kb on + strand, within CSW01_17970at 700.597 kb on - strand, within CSW01_17970at 700.602 kb on - strand, within CSW01_17970at 700.686 kb on + strand, within CSW01_17970at 700.694 kb on + strand, within CSW01_17970at 700.708 kb on + strand, within CSW01_17970at 700.713 kb on + strand, within CSW01_17970at 700.768 kb on + strand, within CSW01_17970at 700.778 kb on + strand, within CSW01_17970at 700.778 kb on + strand, within CSW01_17970at 700.786 kb on - strand, within CSW01_17970at 700.786 kb on - strand, within CSW01_17970at 700.800 kb on - strand, within CSW01_17970at 700.812 kb on + strand, within CSW01_17970at 700.922 kb on - strand, within CSW01_17970at 701.106 kb on - strandat 701.108 kb on + strandat 701.118 kb on - strandat 701.124 kb on - strandat 701.200 kb on - strandat 701.204 kb on + strandat 701.204 kb on + strandat 701.204 kb on + strandat 701.204 kb on + strandat 701.212 kb on - strand, within CSW01_17975at 701.221 kb on - strand, within CSW01_17975at 701.316 kb on - strand, within CSW01_17975at 701.318 kb on + strand, within CSW01_17975at 701.319 kb on + strand, within CSW01_17975at 701.326 kb on - strand, within CSW01_17975at 701.418 kb on - strand, within CSW01_17975at 701.502 kb on - strand, within CSW01_17975at 701.580 kb on + strand, within CSW01_17975at 701.588 kb on - strand, within CSW01_17975at 701.653 kb on - strand, within CSW01_17975at 701.659 kb on + strand, within CSW01_17975at 701.735 kb on + strand, within CSW01_17975at 701.757 kb on - strand, within CSW01_17975at 701.761 kb on + strand, within CSW01_17975at 701.875 kb on + strandat 701.904 kb on + strandat 701.947 kb on + strandat 701.947 kb on + strandat 701.955 kb on - strandat 701.992 kb on - strandat 701.996 kb on - strandat 702.005 kb on + strandat 702.005 kb on + strandat 702.248 kb on - strand, within CSW01_17980at 702.253 kb on - strand, within CSW01_17980at 702.266 kb on + strand, within CSW01_17980at 702.421 kb on + strand, within CSW01_17980at 702.433 kb on + strand, within CSW01_17980at 702.441 kb on - strand, within CSW01_17980at 702.441 kb on - strand, within CSW01_17980at 702.545 kb on + strand, within CSW01_17980at 702.545 kb on + strand, within CSW01_17980at 702.545 kb on + strand, within CSW01_17980at 702.553 kb on - strand, within CSW01_17980at 702.804 kb on + strandat 702.804 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B
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700,148 - CSW01_17965 0.55 +0.1
700,220 + CSW01_17965 0.66 +0.0
700,228 - CSW01_17965 0.67 -0.1
700,230 + CSW01_17965 0.67 -1.2
700,230 + CSW01_17965 0.67 -0.3
700,230 + CSW01_17965 0.67 +0.8
700,230 + CSW01_17965 0.67 +0.4
700,238 - CSW01_17965 0.68 -0.3
700,238 - CSW01_17965 0.68 +0.4
700,238 - CSW01_17965 0.68 +0.6
700,288 + CSW01_17965 0.76 -1.4
700,296 - CSW01_17965 0.77 +1.0
700,301 + CSW01_17965 0.78 +0.8
700,302 + CSW01_17965 0.78 +0.2
700,332 + CSW01_17965 0.82 -0.4
700,339 + CSW01_17965 0.83 +0.3
700,339 + CSW01_17965 0.83 +0.5
700,339 + CSW01_17965 0.83 +0.6
700,348 + CSW01_17965 0.85 +0.9
700,354 - CSW01_17965 0.86 +0.1
700,403 - +0.7
700,455 + -0.8
700,553 - CSW01_17970 0.16 +1.2
700,575 + CSW01_17970 0.19 -0.4
700,597 - CSW01_17970 0.22 -0.5
700,602 - CSW01_17970 0.23 +0.3
700,686 + CSW01_17970 0.35 -0.6
700,694 + CSW01_17970 0.36 +0.6
700,708 + CSW01_17970 0.38 +0.2
700,713 + CSW01_17970 0.39 -0.6
700,768 + CSW01_17970 0.47 -0.2
700,778 + CSW01_17970 0.48 +1.8
700,778 + CSW01_17970 0.48 +1.5
700,786 - CSW01_17970 0.49 +1.4
700,786 - CSW01_17970 0.49 +1.6
700,800 - CSW01_17970 0.51 -0.2
700,812 + CSW01_17970 0.53 +0.3
700,922 - CSW01_17970 0.69 -0.5
701,106 - +1.4
701,108 + +1.2
701,118 - -0.0
701,124 - +0.3
701,200 - +1.2
701,204 + +0.9
701,204 + -0.0
701,204 + +0.7
701,204 + +0.1
701,212 - CSW01_17975 0.10 +0.0
701,221 - CSW01_17975 0.11 -0.3
701,316 - CSW01_17975 0.24 +2.5
701,318 + CSW01_17975 0.25 +0.5
701,319 + CSW01_17975 0.25 +0.4
701,326 - CSW01_17975 0.26 -0.1
701,418 - CSW01_17975 0.38 -1.6
701,502 - CSW01_17975 0.50 -0.6
701,580 + CSW01_17975 0.61 -0.4
701,588 - CSW01_17975 0.62 -1.2
701,653 - CSW01_17975 0.70 -0.1
701,659 + CSW01_17975 0.71 -0.4
701,735 + CSW01_17975 0.82 -0.6
701,757 - CSW01_17975 0.85 -0.1
701,761 + CSW01_17975 0.85 +0.6
701,875 + +0.1
701,904 + -1.3
701,947 + +1.2
701,947 + -0.6
701,955 - +0.3
701,992 - +0.4
701,996 - +0.5
702,005 + +0.6
702,005 + -0.2
702,248 - CSW01_17980 0.42 +0.4
702,253 - CSW01_17980 0.43 -0.3
702,266 + CSW01_17980 0.44 +0.8
702,421 + CSW01_17980 0.66 +0.9
702,433 + CSW01_17980 0.67 -0.9
702,441 - CSW01_17980 0.68 +0.2
702,441 - CSW01_17980 0.68 +0.7
702,545 + CSW01_17980 0.83 -0.1
702,545 + CSW01_17980 0.83 +0.2
702,545 + CSW01_17980 0.83 +0.4
702,553 - CSW01_17980 0.84 +0.1
702,804 + +0.2
702,804 + +0.0

Or see this region's nucleotide sequence