Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17240

Experiment: LB_Aerobic_180MIN_ZN14B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17235 and CSW01_17240 are separated by 231 nucleotidesCSW01_17240 and CSW01_17245 are separated by 17 nucleotides CSW01_17235: CSW01_17235 - putative 2-aminoethylphosphonate ABC transporter substrate-binding protein, at 538,418 to 539,437 _17235 CSW01_17240: CSW01_17240 - 2-aminoethylphosphonate--pyruvate aminotransferase, at 539,669 to 540,772 _17240 CSW01_17245: CSW01_17245 - aspartate aminotransferase family protein, at 540,790 to 542,187 _17245 Position (kb) 539 540 541Strain fitness (log2 ratio) -1 0 1 2 3at 538.699 kb on + strand, within CSW01_17235at 538.929 kb on + strand, within CSW01_17235at 538.929 kb on + strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.937 kb on - strand, within CSW01_17235at 538.967 kb on + strand, within CSW01_17235at 538.970 kb on - strand, within CSW01_17235at 538.970 kb on - strand, within CSW01_17235at 539.087 kb on + strand, within CSW01_17235at 539.095 kb on - strand, within CSW01_17235at 539.115 kb on + strand, within CSW01_17235at 539.341 kb on - strandat 539.365 kb on + strandat 539.380 kb on + strandat 539.383 kb on - strandat 539.392 kb on + strandat 539.400 kb on - strandat 539.400 kb on - strandat 539.632 kb on - strandat 539.684 kb on + strandat 539.815 kb on + strand, within CSW01_17240at 539.849 kb on + strand, within CSW01_17240at 539.849 kb on + strand, within CSW01_17240at 539.868 kb on + strand, within CSW01_17240at 539.873 kb on + strand, within CSW01_17240at 539.881 kb on - strand, within CSW01_17240at 539.907 kb on + strand, within CSW01_17240at 539.907 kb on + strand, within CSW01_17240at 539.942 kb on - strand, within CSW01_17240at 540.016 kb on + strand, within CSW01_17240at 540.016 kb on + strand, within CSW01_17240at 540.016 kb on + strand, within CSW01_17240at 540.024 kb on - strand, within CSW01_17240at 540.024 kb on - strand, within CSW01_17240at 540.024 kb on - strand, within CSW01_17240at 540.024 kb on - strand, within CSW01_17240at 540.135 kb on + strand, within CSW01_17240at 540.212 kb on - strand, within CSW01_17240at 540.260 kb on - strand, within CSW01_17240at 540.292 kb on - strand, within CSW01_17240at 540.297 kb on + strand, within CSW01_17240at 540.297 kb on + strand, within CSW01_17240at 540.297 kb on + strand, within CSW01_17240at 540.305 kb on - strand, within CSW01_17240at 540.305 kb on - strand, within CSW01_17240at 540.305 kb on - strand, within CSW01_17240at 540.333 kb on + strand, within CSW01_17240at 540.402 kb on + strand, within CSW01_17240at 540.412 kb on - strand, within CSW01_17240at 540.421 kb on + strand, within CSW01_17240at 540.423 kb on + strand, within CSW01_17240at 540.423 kb on + strand, within CSW01_17240at 540.510 kb on - strand, within CSW01_17240at 540.533 kb on - strand, within CSW01_17240at 540.776 kb on - strandat 540.816 kb on + strandat 540.829 kb on - strandat 540.886 kb on - strandat 540.954 kb on + strand, within CSW01_17245at 540.973 kb on + strand, within CSW01_17245at 540.973 kb on + strand, within CSW01_17245at 540.981 kb on - strand, within CSW01_17245at 540.983 kb on + strand, within CSW01_17245at 541.015 kb on + strand, within CSW01_17245at 541.040 kb on + strand, within CSW01_17245at 541.109 kb on + strand, within CSW01_17245at 541.117 kb on - strand, within CSW01_17245at 541.157 kb on + strand, within CSW01_17245at 541.228 kb on - strand, within CSW01_17245at 541.281 kb on + strand, within CSW01_17245at 541.365 kb on - strand, within CSW01_17245at 541.365 kb on - strand, within CSW01_17245at 541.365 kb on - strand, within CSW01_17245at 541.446 kb on + strand, within CSW01_17245at 541.449 kb on - strand, within CSW01_17245at 541.531 kb on - strand, within CSW01_17245at 541.570 kb on - strand, within CSW01_17245at 541.570 kb on - strand, within CSW01_17245at 541.659 kb on - strand, within CSW01_17245at 541.696 kb on + strand, within CSW01_17245at 541.696 kb on + strand, within CSW01_17245at 541.704 kb on - strand, within CSW01_17245at 541.704 kb on - strand, within CSW01_17245at 541.704 kb on - strand, within CSW01_17245at 541.704 kb on - strand, within CSW01_17245at 541.711 kb on - strand, within CSW01_17245at 541.717 kb on - strand, within CSW01_17245at 541.718 kb on - strand, within CSW01_17245

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B
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538,699 + CSW01_17235 0.28 -0.3
538,929 + CSW01_17235 0.50 -0.2
538,929 + CSW01_17235 0.50 +0.5
538,937 - CSW01_17235 0.51 -0.2
538,937 - CSW01_17235 0.51 +0.4
538,937 - CSW01_17235 0.51 +0.1
538,937 - CSW01_17235 0.51 +0.5
538,937 - CSW01_17235 0.51 -0.4
538,937 - CSW01_17235 0.51 +1.0
538,967 + CSW01_17235 0.54 -0.1
538,970 - CSW01_17235 0.54 +3.2
538,970 - CSW01_17235 0.54 -0.2
539,087 + CSW01_17235 0.66 -0.4
539,095 - CSW01_17235 0.66 +0.1
539,115 + CSW01_17235 0.68 +0.2
539,341 - +1.4
539,365 + +1.1
539,380 + -0.0
539,383 - +0.0
539,392 + -0.0
539,400 - -0.2
539,400 - +0.6
539,632 - +0.3
539,684 + -0.1
539,815 + CSW01_17240 0.13 -0.9
539,849 + CSW01_17240 0.16 -0.4
539,849 + CSW01_17240 0.16 -1.2
539,868 + CSW01_17240 0.18 -0.1
539,873 + CSW01_17240 0.18 +0.2
539,881 - CSW01_17240 0.19 -0.2
539,907 + CSW01_17240 0.22 +1.3
539,907 + CSW01_17240 0.22 +0.2
539,942 - CSW01_17240 0.25 +0.0
540,016 + CSW01_17240 0.31 +0.8
540,016 + CSW01_17240 0.31 -0.4
540,016 + CSW01_17240 0.31 +0.2
540,024 - CSW01_17240 0.32 -0.0
540,024 - CSW01_17240 0.32 -0.1
540,024 - CSW01_17240 0.32 +0.6
540,024 - CSW01_17240 0.32 +1.4
540,135 + CSW01_17240 0.42 -0.8
540,212 - CSW01_17240 0.49 +0.2
540,260 - CSW01_17240 0.54 -0.4
540,292 - CSW01_17240 0.56 -0.1
540,297 + CSW01_17240 0.57 -0.3
540,297 + CSW01_17240 0.57 +0.2
540,297 + CSW01_17240 0.57 +0.2
540,305 - CSW01_17240 0.58 +1.2
540,305 - CSW01_17240 0.58 -0.5
540,305 - CSW01_17240 0.58 +0.2
540,333 + CSW01_17240 0.60 -0.1
540,402 + CSW01_17240 0.66 +0.5
540,412 - CSW01_17240 0.67 +0.2
540,421 + CSW01_17240 0.68 -0.5
540,423 + CSW01_17240 0.68 +0.5
540,423 + CSW01_17240 0.68 -0.6
540,510 - CSW01_17240 0.76 +0.5
540,533 - CSW01_17240 0.78 -0.0
540,776 - +0.4
540,816 + -0.3
540,829 - +1.3
540,886 - -0.8
540,954 + CSW01_17245 0.12 +0.5
540,973 + CSW01_17245 0.13 +0.6
540,973 + CSW01_17245 0.13 +1.5
540,981 - CSW01_17245 0.14 +0.1
540,983 + CSW01_17245 0.14 +0.6
541,015 + CSW01_17245 0.16 +2.5
541,040 + CSW01_17245 0.18 +0.2
541,109 + CSW01_17245 0.23 +0.1
541,117 - CSW01_17245 0.23 +1.4
541,157 + CSW01_17245 0.26 +0.2
541,228 - CSW01_17245 0.31 +0.1
541,281 + CSW01_17245 0.35 -0.8
541,365 - CSW01_17245 0.41 -0.2
541,365 - CSW01_17245 0.41 +0.0
541,365 - CSW01_17245 0.41 +0.2
541,446 + CSW01_17245 0.47 -0.4
541,449 - CSW01_17245 0.47 +0.0
541,531 - CSW01_17245 0.53 -1.5
541,570 - CSW01_17245 0.56 +1.0
541,570 - CSW01_17245 0.56 +0.8
541,659 - CSW01_17245 0.62 -0.3
541,696 + CSW01_17245 0.65 +1.3
541,696 + CSW01_17245 0.65 -0.0
541,704 - CSW01_17245 0.65 -0.2
541,704 - CSW01_17245 0.65 -0.5
541,704 - CSW01_17245 0.65 +2.4
541,704 - CSW01_17245 0.65 +0.2
541,711 - CSW01_17245 0.66 -0.2
541,717 - CSW01_17245 0.66 -1.5
541,718 - CSW01_17245 0.66 -1.2

Or see this region's nucleotide sequence