Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17115

Experiment: LB_Aerobic_180MIN_ZN14B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17105 and CSW01_17110 are separated by 40 nucleotidesCSW01_17110 and CSW01_17115 are separated by 100 nucleotidesCSW01_17115 and CSW01_17120 are separated by 80 nucleotidesCSW01_17120 and CSW01_17125 are separated by 0 nucleotidesCSW01_17125 and CSW01_17130 are separated by 134 nucleotides CSW01_17105: CSW01_17105 - TonB-dependent hemoglobin/transferrin/lactoferrin family receptor, at 513,125 to 515,221 _17105 CSW01_17110: CSW01_17110 - hypothetical protein, at 515,262 to 515,444 _17110 CSW01_17115: CSW01_17115 - SgrR family transcriptional regulator, at 515,545 to 517,242 _17115 CSW01_17120: CSW01_17120 - DUF3389 domain-containing protein, at 517,323 to 517,556 _17120 CSW01_17125: CSW01_17125 - esterase, at 517,557 to 518,042 _17125 CSW01_17130: CSW01_17130 - Zn-dependent protease, at 518,177 to 518,968 _17130 Position (kb) 515 516 517 518Strain fitness (log2 ratio) -2 -1 0 1 2 3at 514.563 kb on - strand, within CSW01_17105at 514.591 kb on + strand, within CSW01_17105at 514.604 kb on + strand, within CSW01_17105at 514.711 kb on + strand, within CSW01_17105at 514.726 kb on + strand, within CSW01_17105at 514.734 kb on - strand, within CSW01_17105at 514.740 kb on + strand, within CSW01_17105at 514.750 kb on - strand, within CSW01_17105at 514.826 kb on - strand, within CSW01_17105at 514.829 kb on + strand, within CSW01_17105at 514.829 kb on + strand, within CSW01_17105at 514.837 kb on - strand, within CSW01_17105at 514.892 kb on + strand, within CSW01_17105at 514.920 kb on + strand, within CSW01_17105at 514.975 kb on + strand, within CSW01_17105at 514.975 kb on + strand, within CSW01_17105at 514.985 kb on - strand, within CSW01_17105at 515.000 kb on + strand, within CSW01_17105at 515.005 kb on + strand, within CSW01_17105at 515.005 kb on + strand, within CSW01_17105at 515.005 kb on + strand, within CSW01_17105at 515.025 kb on - strandat 515.044 kb on - strandat 515.057 kb on + strandat 515.058 kb on - strandat 515.065 kb on - strandat 515.070 kb on - strandat 515.078 kb on + strandat 515.091 kb on + strandat 515.099 kb on - strandat 515.099 kb on - strandat 515.182 kb on - strandat 515.435 kb on + strandat 515.456 kb on + strandat 515.456 kb on + strandat 515.456 kb on + strandat 515.461 kb on + strandat 515.461 kb on + strandat 515.464 kb on - strandat 515.464 kb on - strandat 515.464 kb on - strandat 515.469 kb on - strandat 515.536 kb on + strandat 515.558 kb on - strandat 515.578 kb on - strandat 515.596 kb on + strandat 515.604 kb on - strandat 515.632 kb on + strandat 515.645 kb on - strandat 515.645 kb on - strandat 515.649 kb on + strandat 515.725 kb on - strand, within CSW01_17115at 515.727 kb on + strand, within CSW01_17115at 516.071 kb on - strand, within CSW01_17115at 516.077 kb on + strand, within CSW01_17115at 516.153 kb on + strand, within CSW01_17115at 516.369 kb on + strand, within CSW01_17115at 516.485 kb on + strand, within CSW01_17115at 516.813 kb on - strand, within CSW01_17115at 516.846 kb on - strand, within CSW01_17115at 516.964 kb on + strand, within CSW01_17115at 516.972 kb on - strand, within CSW01_17115at 517.226 kb on - strandat 517.246 kb on + strandat 517.331 kb on + strandat 517.368 kb on + strand, within CSW01_17120at 517.370 kb on - strand, within CSW01_17120at 517.705 kb on - strand, within CSW01_17125at 517.720 kb on + strand, within CSW01_17125at 517.728 kb on - strand, within CSW01_17125at 517.732 kb on + strand, within CSW01_17125at 517.745 kb on - strand, within CSW01_17125at 517.766 kb on - strand, within CSW01_17125at 517.785 kb on - strand, within CSW01_17125at 517.785 kb on - strand, within CSW01_17125at 518.025 kb on - strandat 518.026 kb on + strandat 518.058 kb on - strandat 518.071 kb on + strandat 518.213 kb on + strandat 518.213 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B
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514,563 - CSW01_17105 0.69 +0.2
514,591 + CSW01_17105 0.70 -0.5
514,604 + CSW01_17105 0.71 -0.0
514,711 + CSW01_17105 0.76 +0.2
514,726 + CSW01_17105 0.76 +0.4
514,734 - CSW01_17105 0.77 -0.7
514,740 + CSW01_17105 0.77 -0.6
514,750 - CSW01_17105 0.77 +0.9
514,826 - CSW01_17105 0.81 +0.1
514,829 + CSW01_17105 0.81 +0.7
514,829 + CSW01_17105 0.81 -0.1
514,837 - CSW01_17105 0.82 +0.0
514,892 + CSW01_17105 0.84 -0.7
514,920 + CSW01_17105 0.86 +0.3
514,975 + CSW01_17105 0.88 -0.2
514,975 + CSW01_17105 0.88 +2.1
514,985 - CSW01_17105 0.89 -0.4
515,000 + CSW01_17105 0.89 -1.0
515,005 + CSW01_17105 0.90 +3.0
515,005 + CSW01_17105 0.90 -0.3
515,005 + CSW01_17105 0.90 +1.0
515,025 - +0.2
515,044 - +0.5
515,057 + -0.1
515,058 - +0.9
515,065 - +2.5
515,070 - +0.4
515,078 + -0.8
515,091 + +0.4
515,099 - +0.3
515,099 - +0.3
515,182 - -0.2
515,435 + +0.1
515,456 + -0.1
515,456 + +1.3
515,456 + -0.7
515,461 + -0.2
515,461 + -0.0
515,464 - -0.5
515,464 - +0.3
515,464 - -0.3
515,469 - -0.4
515,536 + -0.2
515,558 - -0.5
515,578 - -0.7
515,596 + -0.0
515,604 - +2.4
515,632 + +0.2
515,645 - +0.2
515,645 - +0.1
515,649 + +0.0
515,725 - CSW01_17115 0.11 +0.1
515,727 + CSW01_17115 0.11 +0.5
516,071 - CSW01_17115 0.31 +1.4
516,077 + CSW01_17115 0.31 +0.3
516,153 + CSW01_17115 0.36 +0.4
516,369 + CSW01_17115 0.49 +2.0
516,485 + CSW01_17115 0.55 -1.4
516,813 - CSW01_17115 0.75 -0.6
516,846 - CSW01_17115 0.77 +0.1
516,964 + CSW01_17115 0.84 -2.0
516,972 - CSW01_17115 0.84 +0.7
517,226 - -0.0
517,246 + +1.9
517,331 + +0.9
517,368 + CSW01_17120 0.19 +1.0
517,370 - CSW01_17120 0.20 +0.6
517,705 - CSW01_17125 0.30 -0.1
517,720 + CSW01_17125 0.34 +0.3
517,728 - CSW01_17125 0.35 -0.2
517,732 + CSW01_17125 0.36 -0.8
517,745 - CSW01_17125 0.39 +1.0
517,766 - CSW01_17125 0.43 +1.0
517,785 - CSW01_17125 0.47 -0.8
517,785 - CSW01_17125 0.47 +0.4
518,025 - +0.5
518,026 + +0.1
518,058 - -0.4
518,071 + +0.3
518,213 + +0.4
518,213 + +0.5

Or see this region's nucleotide sequence