Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16845

Experiment: LB_Aerobic_180MIN_ZN14B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16840 and CSW01_16845 are separated by 1 nucleotidesCSW01_16845 and CSW01_16850 are separated by 96 nucleotides CSW01_16840: CSW01_16840 - exonuclease sbcCD subunit D, at 448,636 to 449,775 _16840 CSW01_16845: CSW01_16845 - nuclease SbcCD subunit C, at 449,777 to 452,818 _16845 CSW01_16850: CSW01_16850 - hybrid sensor histidine kinase/response regulator, at 452,915 to 454,975 _16850 Position (kb) 449 450 451 452 453Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 448.894 kb on + strand, within CSW01_16840at 448.984 kb on + strand, within CSW01_16840at 449.021 kb on + strand, within CSW01_16840at 449.063 kb on + strand, within CSW01_16840at 449.173 kb on - strand, within CSW01_16840at 449.187 kb on + strand, within CSW01_16840at 449.228 kb on + strand, within CSW01_16840at 449.236 kb on - strand, within CSW01_16840at 449.350 kb on - strand, within CSW01_16840at 449.398 kb on + strand, within CSW01_16840at 449.406 kb on - strand, within CSW01_16840at 449.406 kb on - strand, within CSW01_16840at 449.413 kb on + strand, within CSW01_16840at 449.568 kb on + strand, within CSW01_16840at 449.587 kb on + strand, within CSW01_16840at 449.762 kb on - strandat 449.804 kb on + strandat 449.848 kb on + strandat 449.950 kb on - strandat 450.122 kb on + strand, within CSW01_16845at 450.207 kb on + strand, within CSW01_16845at 450.233 kb on + strand, within CSW01_16845at 450.233 kb on + strand, within CSW01_16845at 450.279 kb on + strand, within CSW01_16845at 450.287 kb on - strand, within CSW01_16845at 450.421 kb on - strand, within CSW01_16845at 450.446 kb on - strand, within CSW01_16845at 450.446 kb on - strand, within CSW01_16845at 450.479 kb on + strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.487 kb on - strand, within CSW01_16845at 450.510 kb on - strand, within CSW01_16845at 450.528 kb on - strand, within CSW01_16845at 450.544 kb on + strand, within CSW01_16845at 450.564 kb on - strand, within CSW01_16845at 450.634 kb on + strand, within CSW01_16845at 450.642 kb on - strand, within CSW01_16845at 450.775 kb on + strand, within CSW01_16845at 450.783 kb on - strand, within CSW01_16845at 450.783 kb on - strand, within CSW01_16845at 450.829 kb on - strand, within CSW01_16845at 450.829 kb on - strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.922 kb on + strand, within CSW01_16845at 450.930 kb on - strand, within CSW01_16845at 450.930 kb on - strand, within CSW01_16845at 450.930 kb on - strand, within CSW01_16845at 450.930 kb on - strand, within CSW01_16845at 450.930 kb on - strand, within CSW01_16845at 450.936 kb on - strand, within CSW01_16845at 451.097 kb on + strand, within CSW01_16845at 451.105 kb on - strand, within CSW01_16845at 451.105 kb on - strand, within CSW01_16845at 451.162 kb on - strand, within CSW01_16845at 451.194 kb on - strand, within CSW01_16845at 451.196 kb on - strand, within CSW01_16845at 451.247 kb on + strand, within CSW01_16845at 451.311 kb on + strand, within CSW01_16845at 451.311 kb on + strand, within CSW01_16845at 451.311 kb on + strand, within CSW01_16845at 451.444 kb on + strand, within CSW01_16845at 451.444 kb on + strand, within CSW01_16845at 451.576 kb on + strand, within CSW01_16845at 451.781 kb on + strand, within CSW01_16845at 451.845 kb on + strand, within CSW01_16845at 451.872 kb on + strand, within CSW01_16845at 451.950 kb on + strand, within CSW01_16845at 451.957 kb on - strand, within CSW01_16845at 452.060 kb on + strand, within CSW01_16845at 452.078 kb on + strand, within CSW01_16845at 452.177 kb on + strand, within CSW01_16845at 452.354 kb on - strand, within CSW01_16845at 452.354 kb on - strand, within CSW01_16845at 452.494 kb on - strand, within CSW01_16845at 452.593 kb on + strandat 452.601 kb on - strandat 452.601 kb on - strandat 452.750 kb on + strandat 452.791 kb on + strandat 452.868 kb on + strandat 452.979 kb on - strandat 453.085 kb on + strandat 453.140 kb on - strand, within CSW01_16850at 453.159 kb on + strand, within CSW01_16850at 453.199 kb on - strand, within CSW01_16850at 453.284 kb on - strand, within CSW01_16850at 453.510 kb on - strand, within CSW01_16850at 453.799 kb on - strand, within CSW01_16850

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B
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448,894 + CSW01_16840 0.23 +1.1
448,984 + CSW01_16840 0.31 -3.8
449,021 + CSW01_16840 0.34 +0.5
449,063 + CSW01_16840 0.37 +0.7
449,173 - CSW01_16840 0.47 -0.5
449,187 + CSW01_16840 0.48 -0.5
449,228 + CSW01_16840 0.52 -0.5
449,236 - CSW01_16840 0.53 +1.0
449,350 - CSW01_16840 0.63 +0.1
449,398 + CSW01_16840 0.67 -0.1
449,406 - CSW01_16840 0.68 -0.5
449,406 - CSW01_16840 0.68 +0.8
449,413 + CSW01_16840 0.68 -0.5
449,568 + CSW01_16840 0.82 +1.1
449,587 + CSW01_16840 0.83 +0.5
449,762 - +1.2
449,804 + +0.1
449,848 + +0.6
449,950 - -0.5
450,122 + CSW01_16845 0.11 +0.7
450,207 + CSW01_16845 0.14 -0.7
450,233 + CSW01_16845 0.15 +0.5
450,233 + CSW01_16845 0.15 +0.0
450,279 + CSW01_16845 0.17 +0.0
450,287 - CSW01_16845 0.17 -0.8
450,421 - CSW01_16845 0.21 +0.9
450,446 - CSW01_16845 0.22 -0.1
450,446 - CSW01_16845 0.22 -0.0
450,479 + CSW01_16845 0.23 +0.0
450,487 - CSW01_16845 0.23 -1.0
450,487 - CSW01_16845 0.23 -1.5
450,487 - CSW01_16845 0.23 +1.2
450,487 - CSW01_16845 0.23 +1.5
450,487 - CSW01_16845 0.23 -0.1
450,487 - CSW01_16845 0.23 +1.3
450,487 - CSW01_16845 0.23 -0.4
450,510 - CSW01_16845 0.24 -0.2
450,528 - CSW01_16845 0.25 +0.4
450,544 + CSW01_16845 0.25 +0.2
450,564 - CSW01_16845 0.26 -0.1
450,634 + CSW01_16845 0.28 -0.1
450,642 - CSW01_16845 0.28 -0.0
450,775 + CSW01_16845 0.33 +0.4
450,783 - CSW01_16845 0.33 -0.6
450,783 - CSW01_16845 0.33 -0.4
450,829 - CSW01_16845 0.35 -0.9
450,829 - CSW01_16845 0.35 +0.4
450,922 + CSW01_16845 0.38 -0.7
450,922 + CSW01_16845 0.38 +0.6
450,922 + CSW01_16845 0.38 +0.2
450,922 + CSW01_16845 0.38 +0.6
450,922 + CSW01_16845 0.38 +0.5
450,922 + CSW01_16845 0.38 -0.5
450,922 + CSW01_16845 0.38 -1.3
450,922 + CSW01_16845 0.38 +2.8
450,922 + CSW01_16845 0.38 +0.6
450,930 - CSW01_16845 0.38 +0.8
450,930 - CSW01_16845 0.38 +0.0
450,930 - CSW01_16845 0.38 +0.2
450,930 - CSW01_16845 0.38 +1.2
450,930 - CSW01_16845 0.38 -0.1
450,936 - CSW01_16845 0.38 +1.5
451,097 + CSW01_16845 0.43 -0.3
451,105 - CSW01_16845 0.44 +0.2
451,105 - CSW01_16845 0.44 +2.1
451,162 - CSW01_16845 0.46 +0.2
451,194 - CSW01_16845 0.47 +1.6
451,196 - CSW01_16845 0.47 +0.1
451,247 + CSW01_16845 0.48 -0.2
451,311 + CSW01_16845 0.50 -1.2
451,311 + CSW01_16845 0.50 -0.3
451,311 + CSW01_16845 0.50 +0.3
451,444 + CSW01_16845 0.55 +1.4
451,444 + CSW01_16845 0.55 +1.5
451,576 + CSW01_16845 0.59 +0.2
451,781 + CSW01_16845 0.66 -1.2
451,845 + CSW01_16845 0.68 +0.5
451,872 + CSW01_16845 0.69 +1.4
451,950 + CSW01_16845 0.71 +0.0
451,957 - CSW01_16845 0.72 +1.2
452,060 + CSW01_16845 0.75 -0.0
452,078 + CSW01_16845 0.76 +0.2
452,177 + CSW01_16845 0.79 +0.2
452,354 - CSW01_16845 0.85 +0.7
452,354 - CSW01_16845 0.85 +1.4
452,494 - CSW01_16845 0.89 +0.9
452,593 + +0.8
452,601 - +0.2
452,601 - +0.2
452,750 + -0.1
452,791 + -1.1
452,868 + +0.3
452,979 - +0.4
453,085 + +0.1
453,140 - CSW01_16850 0.11 +0.4
453,159 + CSW01_16850 0.12 +0.5
453,199 - CSW01_16850 0.14 +0.1
453,284 - CSW01_16850 0.18 -0.2
453,510 - CSW01_16850 0.29 +0.6
453,799 - CSW01_16850 0.43 +0.2

Or see this region's nucleotide sequence