Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15955

Experiment: LB_Aerobic_180MIN_ZN14B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15945 and CSW01_15950 are separated by 47 nucleotidesCSW01_15950 and CSW01_15955 are separated by 72 nucleotidesCSW01_15955 and CSW01_15960 are separated by 252 nucleotidesCSW01_15960 and CSW01_15965 are separated by 302 nucleotides CSW01_15945: CSW01_15945 - DUF1817 domain-containing protein, at 356,930 to 357,967 _15945 CSW01_15950: CSW01_15950 - hypothetical protein, at 358,015 to 358,074 _15950 CSW01_15955: CSW01_15955 - DUF3709 domain-containing protein, at 358,147 to 358,470 _15955 CSW01_15960: CSW01_15960 - hypothetical protein, at 358,723 to 359,118 _15960 CSW01_15965: CSW01_15965 - DUF645 domain-containing protein, at 359,421 to 359,602 _15965 Position (kb) 358 359Strain fitness (log2 ratio) -2 -1 0 1 2at 357.152 kb on - strand, within CSW01_15945at 357.157 kb on + strand, within CSW01_15945at 357.160 kb on - strand, within CSW01_15945at 357.160 kb on - strand, within CSW01_15945at 357.180 kb on - strand, within CSW01_15945at 357.274 kb on + strand, within CSW01_15945at 357.274 kb on + strand, within CSW01_15945at 357.274 kb on + strand, within CSW01_15945at 357.274 kb on + strand, within CSW01_15945at 357.274 kb on + strand, within CSW01_15945at 357.274 kb on + strand, within CSW01_15945at 357.274 kb on + strand, within CSW01_15945at 357.282 kb on - strand, within CSW01_15945at 357.282 kb on - strand, within CSW01_15945at 357.288 kb on + strand, within CSW01_15945at 357.301 kb on - strand, within CSW01_15945at 357.306 kb on - strand, within CSW01_15945at 357.374 kb on + strand, within CSW01_15945at 357.384 kb on + strand, within CSW01_15945at 357.384 kb on + strand, within CSW01_15945at 357.384 kb on + strand, within CSW01_15945at 357.392 kb on - strand, within CSW01_15945at 357.392 kb on - strand, within CSW01_15945at 357.392 kb on - strand, within CSW01_15945at 357.392 kb on - strand, within CSW01_15945at 357.392 kb on - strand, within CSW01_15945at 357.392 kb on - strand, within CSW01_15945at 357.392 kb on - strand, within CSW01_15945at 357.399 kb on + strand, within CSW01_15945at 357.427 kb on + strand, within CSW01_15945at 357.427 kb on + strand, within CSW01_15945at 357.427 kb on + strand, within CSW01_15945at 357.440 kb on - strand, within CSW01_15945at 357.495 kb on + strand, within CSW01_15945at 357.516 kb on + strand, within CSW01_15945at 357.516 kb on + strand, within CSW01_15945at 357.518 kb on + strand, within CSW01_15945at 357.705 kb on - strand, within CSW01_15945at 357.709 kb on + strand, within CSW01_15945at 357.709 kb on + strand, within CSW01_15945at 357.716 kb on - strand, within CSW01_15945at 357.718 kb on + strand, within CSW01_15945at 357.722 kb on - strand, within CSW01_15945at 357.730 kb on - strand, within CSW01_15945at 357.734 kb on + strand, within CSW01_15945at 357.827 kb on - strand, within CSW01_15945at 357.858 kb on + strand, within CSW01_15945at 357.956 kb on - strandat 357.972 kb on - strandat 357.974 kb on + strandat 357.982 kb on - strandat 357.982 kb on - strandat 357.982 kb on - strandat 357.982 kb on - strandat 357.983 kb on + strandat 358.075 kb on - strandat 358.100 kb on + strandat 358.184 kb on - strand, within CSW01_15955at 358.184 kb on - strand, within CSW01_15955at 358.274 kb on + strand, within CSW01_15955at 358.274 kb on + strand, within CSW01_15955at 358.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B
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357,152 - CSW01_15945 0.21 +0.6
357,157 + CSW01_15945 0.22 +0.3
357,160 - CSW01_15945 0.22 +0.2
357,160 - CSW01_15945 0.22 -0.0
357,180 - CSW01_15945 0.24 -0.7
357,274 + CSW01_15945 0.33 -0.0
357,274 + CSW01_15945 0.33 +0.2
357,274 + CSW01_15945 0.33 +0.1
357,274 + CSW01_15945 0.33 +0.6
357,274 + CSW01_15945 0.33 +0.2
357,274 + CSW01_15945 0.33 -1.5
357,274 + CSW01_15945 0.33 -1.1
357,282 - CSW01_15945 0.34 +1.0
357,282 - CSW01_15945 0.34 +2.1
357,288 + CSW01_15945 0.34 -0.4
357,301 - CSW01_15945 0.36 +1.6
357,306 - CSW01_15945 0.36 +0.1
357,374 + CSW01_15945 0.43 +0.7
357,384 + CSW01_15945 0.44 +0.2
357,384 + CSW01_15945 0.44 +0.5
357,384 + CSW01_15945 0.44 +0.3
357,392 - CSW01_15945 0.45 +2.2
357,392 - CSW01_15945 0.45 -0.5
357,392 - CSW01_15945 0.45 -1.6
357,392 - CSW01_15945 0.45 -0.3
357,392 - CSW01_15945 0.45 +1.0
357,392 - CSW01_15945 0.45 +0.3
357,392 - CSW01_15945 0.45 +1.1
357,399 + CSW01_15945 0.45 +0.4
357,427 + CSW01_15945 0.48 -0.3
357,427 + CSW01_15945 0.48 +0.1
357,427 + CSW01_15945 0.48 +0.5
357,440 - CSW01_15945 0.49 -1.9
357,495 + CSW01_15945 0.54 +0.4
357,516 + CSW01_15945 0.56 +0.4
357,516 + CSW01_15945 0.56 +0.5
357,518 + CSW01_15945 0.57 +0.6
357,705 - CSW01_15945 0.75 +0.9
357,709 + CSW01_15945 0.75 -1.4
357,709 + CSW01_15945 0.75 +0.1
357,716 - CSW01_15945 0.76 -0.7
357,718 + CSW01_15945 0.76 -0.7
357,722 - CSW01_15945 0.76 +0.4
357,730 - CSW01_15945 0.77 -0.6
357,734 + CSW01_15945 0.77 -0.8
357,827 - CSW01_15945 0.86 -0.5
357,858 + CSW01_15945 0.89 -0.5
357,956 - -0.0
357,972 - +0.8
357,974 + -0.2
357,982 - +0.9
357,982 - +0.7
357,982 - +0.2
357,982 - -0.1
357,983 + -0.8
358,075 - -0.4
358,100 + -1.4
358,184 - CSW01_15955 0.11 +0.3
358,184 - CSW01_15955 0.11 +1.5
358,274 + CSW01_15955 0.39 +0.0
358,274 + CSW01_15955 0.39 +0.0
358,496 - +0.1

Or see this region's nucleotide sequence