Experiment: LB_Aerobic_180MIN_ZN14B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15110 and CSW01_15115 are separated by 52 nucleotides CSW01_15115 and CSW01_15120 overlap by 11 nucleotides CSW01_15120 and CSW01_15125 are separated by 2 nucleotides CSW01_15125 and CSW01_15130 are separated by 45 nucleotides
CSW01_15110: CSW01_15110 - iron(III) ABC transporter substrate-binding protein, at 248,761 to 249,762
_15110
CSW01_15115: CSW01_15115 - iron(III) ABC transporter permease, at 249,815 to 250,753
_15115
CSW01_15120: CSW01_15120 - iron(III) ABC transporter permease, at 250,743 to 251,693
_15120
CSW01_15125: CSW01_15125 - iron(III) ABC transporter ATP-binding protein, at 251,696 to 252,460
_15125
CSW01_15130: CSW01_15130 - AraC family transcriptional regulator, at 252,506 to 253,582
_15130
Position (kb) 250
251
252 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 249.980 kb on + strand, within CSW01_15115 at 249.980 kb on + strand, within CSW01_15115 at 249.988 kb on - strand, within CSW01_15115 at 250.072 kb on + strand, within CSW01_15115 at 250.082 kb on - strand, within CSW01_15115 at 250.106 kb on + strand, within CSW01_15115 at 250.251 kb on + strand, within CSW01_15115 at 250.251 kb on + strand, within CSW01_15115 at 250.329 kb on - strand, within CSW01_15115 at 250.342 kb on + strand, within CSW01_15115 at 250.342 kb on + strand, within CSW01_15115 at 250.342 kb on + strand, within CSW01_15115 at 250.342 kb on + strand, within CSW01_15115 at 250.486 kb on - strand, within CSW01_15115 at 250.509 kb on - strand, within CSW01_15115 at 250.743 kb on + strand at 250.743 kb on + strand at 250.751 kb on - strand at 250.912 kb on - strand, within CSW01_15120 at 250.987 kb on + strand, within CSW01_15120 at 251.126 kb on + strand, within CSW01_15120 at 251.348 kb on + strand, within CSW01_15120 at 251.456 kb on + strand, within CSW01_15120 at 251.464 kb on - strand, within CSW01_15120 at 251.579 kb on - strand, within CSW01_15120 at 251.628 kb on - strand at 251.659 kb on - strand at 251.742 kb on + strand at 251.774 kb on + strand, within CSW01_15125 at 251.774 kb on + strand, within CSW01_15125 at 251.782 kb on - strand, within CSW01_15125 at 251.879 kb on - strand, within CSW01_15125 at 251.902 kb on - strand, within CSW01_15125 at 251.938 kb on - strand, within CSW01_15125 at 251.948 kb on - strand, within CSW01_15125 at 252.258 kb on - strand, within CSW01_15125 at 252.449 kb on + strand at 252.586 kb on + strand at 252.616 kb on + strand, within CSW01_15130 at 252.625 kb on + strand, within CSW01_15130
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B remove 249,980 + CSW01_15115 0.18 +0.1 249,980 + CSW01_15115 0.18 -0.3 249,988 - CSW01_15115 0.18 -1.1 250,072 + CSW01_15115 0.27 +0.2 250,082 - CSW01_15115 0.28 -0.7 250,106 + CSW01_15115 0.31 -1.2 250,251 + CSW01_15115 0.46 -0.2 250,251 + CSW01_15115 0.46 -3.3 250,329 - CSW01_15115 0.55 +0.5 250,342 + CSW01_15115 0.56 +0.3 250,342 + CSW01_15115 0.56 -2.3 250,342 + CSW01_15115 0.56 -2.5 250,342 + CSW01_15115 0.56 -0.8 250,486 - CSW01_15115 0.71 -1.5 250,509 - CSW01_15115 0.74 -0.3 250,743 + +0.2 250,743 + +0.1 250,751 - -0.0 250,912 - CSW01_15120 0.18 -0.8 250,987 + CSW01_15120 0.26 +2.6 251,126 + CSW01_15120 0.40 -0.2 251,348 + CSW01_15120 0.64 -0.5 251,456 + CSW01_15120 0.75 -1.1 251,464 - CSW01_15120 0.76 -1.1 251,579 - CSW01_15120 0.88 -0.1 251,628 - +0.6 251,659 - +0.1 251,742 + +0.4 251,774 + CSW01_15125 0.10 -0.2 251,774 + CSW01_15125 0.10 +0.7 251,782 - CSW01_15125 0.11 -0.0 251,879 - CSW01_15125 0.24 +0.0 251,902 - CSW01_15125 0.27 -1.6 251,938 - CSW01_15125 0.32 -0.8 251,948 - CSW01_15125 0.33 -0.5 252,258 - CSW01_15125 0.73 -1.8 252,449 + -0.9 252,586 + +0.8 252,616 + CSW01_15130 0.10 +0.2 252,625 + CSW01_15130 0.11 -0.9
Or see this region's nucleotide sequence