Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14930

Experiment: LB_Aerobic_180MIN_ZN14B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_14920 and CSW01_14925 are separated by 234 nucleotidesCSW01_14925 and CSW01_14930 are separated by 86 nucleotidesCSW01_14930 and CSW01_14935 overlap by 1 nucleotidesCSW01_14935 and CSW01_14940 are separated by 37 nucleotides CSW01_14920: CSW01_14920 - NADH:ubiquinone oxidoreductase, at 204,627 to 205,004 _14920 CSW01_14925: CSW01_14925 - hypothetical protein, at 205,239 to 205,517 _14925 CSW01_14930: CSW01_14930 - response regulator, at 205,604 to 206,608 _14930 CSW01_14935: CSW01_14935 - hypothetical protein, at 206,608 to 207,054 _14935 CSW01_14940: CSW01_14940 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 207,092 to 208,576 _14940 Position (kb) 205 206 207Strain fitness (log2 ratio) -1 0 1at 204.689 kb on - strand, within CSW01_14920at 204.794 kb on + strand, within CSW01_14920at 204.827 kb on - strand, within CSW01_14920at 205.038 kb on + strandat 205.038 kb on + strandat 205.038 kb on + strandat 205.038 kb on + strandat 205.046 kb on - strandat 205.048 kb on + strandat 205.116 kb on + strandat 205.186 kb on + strandat 205.194 kb on - strandat 205.194 kb on - strandat 205.194 kb on - strandat 205.194 kb on - strandat 205.194 kb on - strandat 205.202 kb on + strandat 205.202 kb on + strandat 205.203 kb on + strandat 205.234 kb on + strandat 205.300 kb on - strand, within CSW01_14925at 205.352 kb on - strand, within CSW01_14925at 205.383 kb on + strand, within CSW01_14925at 205.430 kb on + strand, within CSW01_14925at 205.436 kb on - strand, within CSW01_14925at 205.438 kb on - strand, within CSW01_14925at 205.438 kb on - strand, within CSW01_14925at 205.464 kb on - strand, within CSW01_14925at 205.491 kb on - strandat 205.544 kb on + strandat 205.606 kb on + strandat 205.606 kb on + strandat 205.616 kb on + strandat 205.624 kb on - strandat 205.683 kb on + strandat 205.686 kb on - strandat 205.688 kb on + strandat 205.736 kb on - strand, within CSW01_14930at 205.743 kb on + strand, within CSW01_14930at 205.751 kb on - strand, within CSW01_14930at 205.969 kb on - strand, within CSW01_14930at 206.058 kb on - strand, within CSW01_14930at 206.088 kb on + strand, within CSW01_14930at 206.105 kb on + strand, within CSW01_14930at 206.119 kb on - strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.159 kb on - strand, within CSW01_14930at 206.193 kb on - strand, within CSW01_14930at 206.242 kb on - strand, within CSW01_14930at 206.253 kb on + strand, within CSW01_14930at 206.315 kb on + strand, within CSW01_14930at 206.324 kb on - strand, within CSW01_14930at 206.377 kb on - strand, within CSW01_14930at 206.378 kb on - strand, within CSW01_14930at 206.487 kb on + strand, within CSW01_14930at 206.487 kb on + strand, within CSW01_14930at 206.488 kb on - strand, within CSW01_14930at 206.495 kb on - strand, within CSW01_14930at 206.602 kb on + strandat 206.610 kb on - strandat 206.610 kb on - strandat 206.621 kb on - strandat 206.732 kb on - strand, within CSW01_14935at 206.744 kb on - strand, within CSW01_14935at 206.894 kb on + strand, within CSW01_14935at 206.956 kb on - strand, within CSW01_14935at 206.957 kb on - strand, within CSW01_14935at 207.099 kb on + strandat 207.099 kb on + strandat 207.099 kb on - strandat 207.129 kb on + strandat 207.185 kb on - strandat 207.185 kb on - strandat 207.249 kb on - strand, within CSW01_14940at 207.322 kb on - strand, within CSW01_14940at 207.413 kb on + strand, within CSW01_14940at 207.413 kb on + strand, within CSW01_14940at 207.434 kb on + strand, within CSW01_14940at 207.435 kb on - strand, within CSW01_14940at 207.440 kb on - strand, within CSW01_14940at 207.442 kb on + strand, within CSW01_14940at 207.449 kb on - strand, within CSW01_14940at 207.492 kb on - strand, within CSW01_14940at 207.540 kb on - strand, within CSW01_14940at 207.590 kb on - strand, within CSW01_14940

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B
remove
204,689 - CSW01_14920 0.16 +0.3
204,794 + CSW01_14920 0.44 +0.2
204,827 - CSW01_14920 0.53 -1.1
205,038 + -0.6
205,038 + -0.3
205,038 + +0.5
205,038 + -0.2
205,046 - +0.3
205,048 + +0.2
205,116 + +0.3
205,186 + +0.1
205,194 - +0.8
205,194 - +0.8
205,194 - +0.2
205,194 - +0.5
205,194 - +0.6
205,202 + -0.1
205,202 + +0.7
205,203 + +1.0
205,234 + -0.8
205,300 - CSW01_14925 0.22 -0.3
205,352 - CSW01_14925 0.41 +0.2
205,383 + CSW01_14925 0.52 -1.4
205,430 + CSW01_14925 0.68 +0.6
205,436 - CSW01_14925 0.71 -0.8
205,438 - CSW01_14925 0.71 +1.7
205,438 - CSW01_14925 0.71 +0.2
205,464 - CSW01_14925 0.81 +0.2
205,491 - -0.0
205,544 + -0.1
205,606 + -0.3
205,606 + +0.2
205,616 + -0.8
205,624 - +0.2
205,683 + +0.8
205,686 - +0.8
205,688 + +0.1
205,736 - CSW01_14930 0.13 +0.1
205,743 + CSW01_14930 0.14 -0.1
205,751 - CSW01_14930 0.15 -0.1
205,969 - CSW01_14930 0.36 +0.2
206,058 - CSW01_14930 0.45 -0.1
206,088 + CSW01_14930 0.48 +0.9
206,105 + CSW01_14930 0.50 +0.2
206,119 - CSW01_14930 0.51 -0.3
206,130 + CSW01_14930 0.52 -0.0
206,130 + CSW01_14930 0.52 +0.3
206,130 + CSW01_14930 0.52 -0.0
206,130 + CSW01_14930 0.52 -0.5
206,130 + CSW01_14930 0.52 +0.1
206,130 + CSW01_14930 0.52 -0.9
206,130 + CSW01_14930 0.52 -0.6
206,130 + CSW01_14930 0.52 -0.1
206,130 + CSW01_14930 0.52 +0.7
206,130 + CSW01_14930 0.52 +0.4
206,138 - CSW01_14930 0.53 -0.3
206,138 - CSW01_14930 0.53 +0.4
206,138 - CSW01_14930 0.53 +0.7
206,138 - CSW01_14930 0.53 -0.5
206,138 - CSW01_14930 0.53 -0.1
206,159 - CSW01_14930 0.55 -0.1
206,193 - CSW01_14930 0.59 +0.7
206,242 - CSW01_14930 0.63 +1.0
206,253 + CSW01_14930 0.65 +0.2
206,315 + CSW01_14930 0.71 +0.6
206,324 - CSW01_14930 0.72 +1.3
206,377 - CSW01_14930 0.77 -0.9
206,378 - CSW01_14930 0.77 +0.6
206,487 + CSW01_14930 0.88 +0.3
206,487 + CSW01_14930 0.88 +0.8
206,488 - CSW01_14930 0.88 +0.6
206,495 - CSW01_14930 0.89 +1.0
206,602 + +0.1
206,610 - -0.8
206,610 - +0.2
206,621 - +0.5
206,732 - CSW01_14935 0.28 +0.4
206,744 - CSW01_14935 0.30 +1.5
206,894 + CSW01_14935 0.64 -0.3
206,956 - CSW01_14935 0.78 -1.2
206,957 - CSW01_14935 0.78 +0.5
207,099 + -0.3
207,099 + +0.8
207,099 - -1.0
207,129 + +0.2
207,185 - +0.2
207,185 - +1.2
207,249 - CSW01_14940 0.11 -0.4
207,322 - CSW01_14940 0.15 +0.0
207,413 + CSW01_14940 0.22 +0.2
207,413 + CSW01_14940 0.22 -0.5
207,434 + CSW01_14940 0.23 +0.1
207,435 - CSW01_14940 0.23 -1.0
207,440 - CSW01_14940 0.23 +0.6
207,442 + CSW01_14940 0.24 +0.4
207,449 - CSW01_14940 0.24 -0.6
207,492 - CSW01_14940 0.27 +0.3
207,540 - CSW01_14940 0.30 -0.2
207,590 - CSW01_14940 0.34 -0.0

Or see this region's nucleotide sequence