Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11670

Experiment: LB_Aerobic_180MIN_ZN14B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_11660 and CSW01_11665 overlap by 1 nucleotidesCSW01_11665 and CSW01_11670 overlap by 14 nucleotidesCSW01_11670 and CSW01_11675 are separated by 5 nucleotides CSW01_11660: CSW01_11660 - NADH:ubiquinone reductase (Na(+)-transporting) subunit D, at 2,478,184 to 2,478,816 _11660 CSW01_11665: CSW01_11665 - NADH:ubiquinone reductase (Na(+)-transporting) subunit C, at 2,478,816 to 2,479,589 _11665 CSW01_11670: CSW01_11670 - NADH:ubiquinone reductase (Na(+)-transporting) subunit B, at 2,479,576 to 2,480,823 _11670 CSW01_11675: CSW01_11675 - NADH:ubiquinone reductase (Na(+)-transporting) subunit A, at 2,480,829 to 2,482,169 _11675 Position (kb) 2479 2480 2481Strain fitness (log2 ratio) -2 -1 0 1 2at 2478.959 kb on - strand, within CSW01_11665at 2479.090 kb on - strand, within CSW01_11665at 2479.730 kb on - strand, within CSW01_11670at 2479.883 kb on + strand, within CSW01_11670at 2480.230 kb on + strand, within CSW01_11670at 2480.232 kb on - strand, within CSW01_11670at 2480.384 kb on - strand, within CSW01_11670at 2480.426 kb on - strand, within CSW01_11670at 2480.558 kb on + strand, within CSW01_11670at 2480.738 kb on + strandat 2480.746 kb on - strandat 2481.330 kb on + strand, within CSW01_11675at 2481.595 kb on - strand, within CSW01_11675at 2481.597 kb on + strand, within CSW01_11675

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B
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2,478,959 - CSW01_11665 0.18 -1.2
2,479,090 - CSW01_11665 0.35 -1.2
2,479,730 - CSW01_11670 0.12 -0.6
2,479,883 + CSW01_11670 0.25 +0.4
2,480,230 + CSW01_11670 0.52 -1.9
2,480,232 - CSW01_11670 0.53 +2.0
2,480,384 - CSW01_11670 0.65 +0.4
2,480,426 - CSW01_11670 0.68 -0.6
2,480,558 + CSW01_11670 0.79 +0.4
2,480,738 + +0.4
2,480,746 - -1.6
2,481,330 + CSW01_11675 0.37 +0.4
2,481,595 - CSW01_11675 0.57 -1.2
2,481,597 + CSW01_11675 0.57 +0.4

Or see this region's nucleotide sequence