Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08535

Experiment: LB_Aerobic_180MIN_ZN14B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_08525 and CSW01_08530 are separated by 167 nucleotidesCSW01_08530 and CSW01_08535 are separated by 13 nucleotidesCSW01_08535 and CSW01_08540 are separated by 103 nucleotidesCSW01_08540 and CSW01_08545 overlap by 8 nucleotides CSW01_08525: CSW01_08525 - formate transporter FocA, at 1,828,032 to 1,828,874 _08525 CSW01_08530: CSW01_08530 - RNA helicase, at 1,829,042 to 1,829,212 _08530 CSW01_08535: CSW01_08535 - TIGR02647 family protein, at 1,829,226 to 1,829,459 _08535 CSW01_08540: CSW01_08540 - NAD(P)-dependent oxidoreductase, at 1,829,563 to 1,830,393 _08540 CSW01_08545: CSW01_08545 - YdcF family protein, at 1,830,386 to 1,831,033 _08545 Position (kb) 1829 1830Strain fitness (log2 ratio) -1 0 1at 1828.228 kb on + strand, within CSW01_08525at 1828.296 kb on - strand, within CSW01_08525at 1828.298 kb on - strand, within CSW01_08525at 1828.298 kb on - strand, within CSW01_08525at 1828.333 kb on - strand, within CSW01_08525at 1828.646 kb on - strand, within CSW01_08525at 1828.663 kb on - strand, within CSW01_08525at 1828.663 kb on - strand, within CSW01_08525at 1828.698 kb on - strand, within CSW01_08525at 1828.716 kb on - strand, within CSW01_08525at 1828.870 kb on - strandat 1828.979 kb on - strandat 1829.049 kb on + strandat 1829.049 kb on + strandat 1829.049 kb on + strandat 1829.049 kb on + strandat 1829.057 kb on - strandat 1829.140 kb on + strand, within CSW01_08530at 1829.148 kb on - strand, within CSW01_08530at 1829.185 kb on + strand, within CSW01_08530at 1829.185 kb on + strand, within CSW01_08530at 1829.193 kb on - strand, within CSW01_08530at 1829.193 kb on - strand, within CSW01_08530at 1829.216 kb on + strandat 1829.285 kb on - strand, within CSW01_08535at 1829.287 kb on + strand, within CSW01_08535at 1829.339 kb on - strand, within CSW01_08535at 1829.362 kb on - strand, within CSW01_08535at 1829.475 kb on + strandat 1829.483 kb on - strandat 1829.535 kb on + strandat 1829.560 kb on - strandat 1829.570 kb on - strandat 1829.570 kb on - strandat 1829.633 kb on + strandat 1829.680 kb on - strand, within CSW01_08540at 1829.686 kb on - strand, within CSW01_08540at 1829.736 kb on + strand, within CSW01_08540at 1829.804 kb on + strand, within CSW01_08540at 1829.817 kb on - strand, within CSW01_08540at 1829.827 kb on - strand, within CSW01_08540at 1829.896 kb on - strand, within CSW01_08540at 1830.018 kb on - strand, within CSW01_08540at 1830.025 kb on + strand, within CSW01_08540at 1830.025 kb on + strand, within CSW01_08540at 1830.038 kb on - strand, within CSW01_08540at 1830.039 kb on - strand, within CSW01_08540at 1830.040 kb on + strand, within CSW01_08540at 1830.063 kb on - strand, within CSW01_08540at 1830.063 kb on - strand, within CSW01_08540at 1830.079 kb on + strand, within CSW01_08540at 1830.211 kb on + strand, within CSW01_08540at 1830.374 kb on - strandat 1830.396 kb on - strandat 1830.446 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B
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1,828,228 + CSW01_08525 0.23 +0.1
1,828,296 - CSW01_08525 0.31 -0.4
1,828,298 - CSW01_08525 0.32 +0.4
1,828,298 - CSW01_08525 0.32 +0.1
1,828,333 - CSW01_08525 0.36 -0.3
1,828,646 - CSW01_08525 0.73 -0.6
1,828,663 - CSW01_08525 0.75 +0.8
1,828,663 - CSW01_08525 0.75 -0.5
1,828,698 - CSW01_08525 0.79 +0.5
1,828,716 - CSW01_08525 0.81 +0.0
1,828,870 - -0.4
1,828,979 - +0.9
1,829,049 + +0.9
1,829,049 + +0.6
1,829,049 + +0.1
1,829,049 + -0.6
1,829,057 - +0.9
1,829,140 + CSW01_08530 0.57 +1.2
1,829,148 - CSW01_08530 0.62 +0.2
1,829,185 + CSW01_08530 0.84 +0.9
1,829,185 + CSW01_08530 0.84 -0.1
1,829,193 - CSW01_08530 0.88 +0.3
1,829,193 - CSW01_08530 0.88 -1.1
1,829,216 + +0.5
1,829,285 - CSW01_08535 0.25 +0.4
1,829,287 + CSW01_08535 0.26 -0.7
1,829,339 - CSW01_08535 0.48 -1.7
1,829,362 - CSW01_08535 0.58 -0.5
1,829,475 + +0.4
1,829,483 - +0.1
1,829,535 + +0.8
1,829,560 - +0.4
1,829,570 - -0.0
1,829,570 - +0.1
1,829,633 + -0.5
1,829,680 - CSW01_08540 0.14 +0.7
1,829,686 - CSW01_08540 0.15 -0.5
1,829,736 + CSW01_08540 0.21 +1.0
1,829,804 + CSW01_08540 0.29 +1.2
1,829,817 - CSW01_08540 0.31 +0.8
1,829,827 - CSW01_08540 0.32 -0.1
1,829,896 - CSW01_08540 0.40 -1.6
1,830,018 - CSW01_08540 0.55 -0.3
1,830,025 + CSW01_08540 0.56 -0.2
1,830,025 + CSW01_08540 0.56 -0.5
1,830,038 - CSW01_08540 0.57 +0.2
1,830,039 - CSW01_08540 0.57 +0.4
1,830,040 + CSW01_08540 0.57 -0.2
1,830,063 - CSW01_08540 0.60 +1.2
1,830,063 - CSW01_08540 0.60 +0.2
1,830,079 + CSW01_08540 0.62 +0.4
1,830,211 + CSW01_08540 0.78 -0.1
1,830,374 - +0.2
1,830,396 - -0.2
1,830,446 + +0.3

Or see this region's nucleotide sequence