Experiment: LB_Aerobic_180MIN_ZN14B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_07435 and CSW01_07440 are separated by 110 nucleotides CSW01_07440 and CSW01_07445 are separated by 4 nucleotides CSW01_07445 and CSW01_07450 overlap by 44 nucleotides CSW01_07450 and CSW01_07455 are separated by 64 nucleotides CSW01_07455 and CSW01_07460 are separated by 82 nucleotides
CSW01_07435: CSW01_07435 - hypothetical protein, at 1,584,043 to 1,584,402
_07435
CSW01_07440: CSW01_07440 - DUF3634 domain-containing protein, at 1,584,513 to 1,584,845
_07440
CSW01_07445: CSW01_07445 - macrodomain Ter protein MatP, at 1,584,850 to 1,585,359
_07445
CSW01_07450: CSW01_07450 - Lon protease family protein, at 1,585,316 to 1,587,112
_07450
CSW01_07455: CSW01_07455 - beta-hydroxydecanoyl-ACP dehydratase, at 1,587,177 to 1,587,695
_07455
CSW01_07460: CSW01_07460 - ribosome modulation factor, at 1,587,778 to 1,587,951
_07460
Position (kb) 1585
1586
1587
1588 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1584.359 kb on - strand, within CSW01_07435 at 1584.476 kb on - strand at 1584.700 kb on - strand, within CSW01_07440 at 1584.746 kb on + strand, within CSW01_07440 at 1584.746 kb on + strand, within CSW01_07440 at 1584.815 kb on + strand at 1584.815 kb on + strand at 1584.815 kb on + strand at 1584.857 kb on + strand at 1584.904 kb on - strand, within CSW01_07445 at 1585.137 kb on + strand, within CSW01_07445 at 1585.163 kb on + strand, within CSW01_07445 at 1585.326 kb on - strand at 1585.351 kb on + strand at 1585.466 kb on + strand at 1585.485 kb on + strand at 1585.515 kb on - strand, within CSW01_07450 at 1585.515 kb on - strand, within CSW01_07450 at 1585.571 kb on + strand, within CSW01_07450 at 1585.571 kb on + strand, within CSW01_07450 at 1585.571 kb on + strand, within CSW01_07450 at 1585.592 kb on - strand, within CSW01_07450 at 1585.630 kb on + strand, within CSW01_07450 at 1586.242 kb on + strand, within CSW01_07450 at 1586.265 kb on - strand, within CSW01_07450 at 1586.356 kb on - strand, within CSW01_07450 at 1586.452 kb on + strand, within CSW01_07450 at 1586.460 kb on - strand, within CSW01_07450 at 1586.644 kb on + strand, within CSW01_07450 at 1586.849 kb on - strand, within CSW01_07450 at 1586.876 kb on - strand, within CSW01_07450 at 1587.002 kb on + strand at 1587.832 kb on + strand, within CSW01_07460
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B remove 1,584,359 - CSW01_07435 0.88 -0.8 1,584,476 - +0.0 1,584,700 - CSW01_07440 0.56 +0.1 1,584,746 + CSW01_07440 0.70 -0.8 1,584,746 + CSW01_07440 0.70 +0.3 1,584,815 + -0.9 1,584,815 + -0.4 1,584,815 + +0.2 1,584,857 + +3.0 1,584,904 - CSW01_07445 0.11 +0.5 1,585,137 + CSW01_07445 0.56 -0.4 1,585,163 + CSW01_07445 0.61 +0.5 1,585,326 - +0.7 1,585,351 + +0.9 1,585,466 + +0.6 1,585,485 + -0.5 1,585,515 - CSW01_07450 0.11 -0.4 1,585,515 - CSW01_07450 0.11 -1.8 1,585,571 + CSW01_07450 0.14 -0.4 1,585,571 + CSW01_07450 0.14 -0.4 1,585,571 + CSW01_07450 0.14 -0.8 1,585,592 - CSW01_07450 0.15 -0.2 1,585,630 + CSW01_07450 0.17 -1.0 1,586,242 + CSW01_07450 0.52 +0.6 1,586,265 - CSW01_07450 0.53 -0.4 1,586,356 - CSW01_07450 0.58 -0.1 1,586,452 + CSW01_07450 0.63 -0.1 1,586,460 - CSW01_07450 0.64 -0.1 1,586,644 + CSW01_07450 0.74 -0.1 1,586,849 - CSW01_07450 0.85 -1.4 1,586,876 - CSW01_07450 0.87 -0.4 1,587,002 + +0.0 1,587,832 + CSW01_07460 0.31 -0.4
Or see this region's nucleotide sequence