Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05040

Experiment: LB_Aerobic_180MIN_ZN14B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05035 and CSW01_05040 are separated by 114 nucleotidesCSW01_05040 and CSW01_05045 are separated by 99 nucleotides CSW01_05035: CSW01_05035 - adenylate kinase, at 1,049,234 to 1,049,878 _05035 CSW01_05040: CSW01_05040 - ferrochelatase, at 1,049,993 to 1,050,967 _05040 CSW01_05045: CSW01_05045 - dipeptide/tripeptide permease DtpA, at 1,051,067 to 1,052,611 _05045 Position (kb) 1049 1050 1051Strain fitness (log2 ratio) -1 0 1 2at 1049.900 kb on - strandat 1049.976 kb on + strandat 1050.949 kb on + strandat 1050.949 kb on + strandat 1050.949 kb on + strandat 1050.949 kb on + strandat 1050.949 kb on + strandat 1050.957 kb on - strandat 1050.968 kb on + strandat 1050.968 kb on + strandat 1051.038 kb on - strandat 1051.241 kb on + strand, within CSW01_05045at 1051.241 kb on + strand, within CSW01_05045at 1051.287 kb on + strand, within CSW01_05045at 1051.296 kb on + strand, within CSW01_05045at 1051.303 kb on - strand, within CSW01_05045at 1051.432 kb on - strand, within CSW01_05045at 1051.460 kb on + strand, within CSW01_05045at 1051.644 kb on + strand, within CSW01_05045at 1051.828 kb on + strand, within CSW01_05045at 1051.828 kb on + strand, within CSW01_05045at 1051.878 kb on + strand, within CSW01_05045

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B
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1,049,900 - +1.1
1,049,976 + +0.2
1,050,949 + +0.5
1,050,949 + -0.0
1,050,949 + -0.6
1,050,949 + -0.4
1,050,949 + -0.1
1,050,957 - -0.3
1,050,968 + -0.6
1,050,968 + -0.4
1,051,038 - +0.3
1,051,241 + CSW01_05045 0.11 +0.1
1,051,241 + CSW01_05045 0.11 -0.2
1,051,287 + CSW01_05045 0.14 -1.3
1,051,296 + CSW01_05045 0.15 +0.2
1,051,303 - CSW01_05045 0.15 +2.6
1,051,432 - CSW01_05045 0.24 -0.4
1,051,460 + CSW01_05045 0.25 +0.3
1,051,644 + CSW01_05045 0.37 +0.5
1,051,828 + CSW01_05045 0.49 +0.8
1,051,828 + CSW01_05045 0.49 -0.5
1,051,878 + CSW01_05045 0.52 +0.3

Or see this region's nucleotide sequence