Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03970

Experiment: LB_Aerobic_180MIN_ZN14B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03965 and CSW01_03970 are separated by 304 nucleotidesCSW01_03970 and CSW01_03975 overlap by 20 nucleotides CSW01_03965: CSW01_03965 - alanyl-tRNA editing protein, at 815,781 to 816,698 _03965 CSW01_03970: CSW01_03970 - DNA ligase, at 817,003 to 817,236 _03970 CSW01_03975: CSW01_03975 - exodeoxyribonuclease VII large subunit, at 817,217 to 818,557 _03975 Position (kb) 817 818Strain fitness (log2 ratio) -2 -1 0 1 2at 816.003 kb on - strand, within CSW01_03965at 816.050 kb on - strand, within CSW01_03965at 816.132 kb on + strand, within CSW01_03965at 816.240 kb on - strand, within CSW01_03965at 816.274 kb on + strand, within CSW01_03965at 816.294 kb on - strand, within CSW01_03965at 816.299 kb on + strand, within CSW01_03965at 816.387 kb on - strand, within CSW01_03965at 816.472 kb on + strand, within CSW01_03965at 816.477 kb on + strand, within CSW01_03965at 816.477 kb on + strand, within CSW01_03965at 816.477 kb on + strand, within CSW01_03965at 816.477 kb on + strand, within CSW01_03965at 816.485 kb on - strand, within CSW01_03965at 816.485 kb on - strand, within CSW01_03965at 816.510 kb on + strand, within CSW01_03965at 816.511 kb on + strand, within CSW01_03965at 816.518 kb on - strand, within CSW01_03965at 816.593 kb on + strand, within CSW01_03965at 816.601 kb on - strand, within CSW01_03965at 816.884 kb on - strandat 816.929 kb on - strandat 816.929 kb on - strandat 816.945 kb on + strandat 816.998 kb on + strandat 817.006 kb on - strandat 817.006 kb on - strandat 817.048 kb on + strand, within CSW01_03970at 817.048 kb on + strand, within CSW01_03970at 817.048 kb on + strand, within CSW01_03970at 817.048 kb on + strand, within CSW01_03970at 817.048 kb on + strand, within CSW01_03970at 817.056 kb on - strand, within CSW01_03970at 817.056 kb on - strand, within CSW01_03970at 817.056 kb on - strand, within CSW01_03970at 817.056 kb on - strand, within CSW01_03970at 817.083 kb on - strand, within CSW01_03970at 817.115 kb on - strand, within CSW01_03970at 817.128 kb on + strand, within CSW01_03970at 817.134 kb on + strand, within CSW01_03970at 817.134 kb on + strand, within CSW01_03970at 817.134 kb on + strand, within CSW01_03970at 817.136 kb on - strand, within CSW01_03970at 817.236 kb on - strandat 817.327 kb on - strandat 817.346 kb on + strandat 817.573 kb on + strand, within CSW01_03975at 817.671 kb on - strand, within CSW01_03975at 817.756 kb on + strand, within CSW01_03975at 817.769 kb on + strand, within CSW01_03975at 817.789 kb on + strand, within CSW01_03975at 817.844 kb on + strand, within CSW01_03975at 817.976 kb on - strand, within CSW01_03975at 817.985 kb on + strand, within CSW01_03975at 818.022 kb on + strand, within CSW01_03975at 818.045 kb on - strand, within CSW01_03975at 818.101 kb on - strand, within CSW01_03975at 818.125 kb on + strand, within CSW01_03975

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B
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816,003 - CSW01_03965 0.24 +0.9
816,050 - CSW01_03965 0.29 +1.3
816,132 + CSW01_03965 0.38 -1.0
816,240 - CSW01_03965 0.50 +0.4
816,274 + CSW01_03965 0.54 -0.4
816,294 - CSW01_03965 0.56 +0.5
816,299 + CSW01_03965 0.56 +0.9
816,387 - CSW01_03965 0.66 +0.9
816,472 + CSW01_03965 0.75 +1.0
816,477 + CSW01_03965 0.76 +1.5
816,477 + CSW01_03965 0.76 +0.6
816,477 + CSW01_03965 0.76 +1.0
816,477 + CSW01_03965 0.76 +0.5
816,485 - CSW01_03965 0.77 +0.1
816,485 - CSW01_03965 0.77 -0.2
816,510 + CSW01_03965 0.79 +2.1
816,511 + CSW01_03965 0.80 +0.5
816,518 - CSW01_03965 0.80 +0.3
816,593 + CSW01_03965 0.88 -0.2
816,601 - CSW01_03965 0.89 -0.1
816,884 - +0.5
816,929 - -0.1
816,929 - +0.2
816,945 + -0.1
816,998 + +0.4
817,006 - +0.3
817,006 - +0.2
817,048 + CSW01_03970 0.19 +0.2
817,048 + CSW01_03970 0.19 +0.4
817,048 + CSW01_03970 0.19 +0.3
817,048 + CSW01_03970 0.19 +1.1
817,048 + CSW01_03970 0.19 +0.3
817,056 - CSW01_03970 0.23 +0.2
817,056 - CSW01_03970 0.23 +1.0
817,056 - CSW01_03970 0.23 +0.6
817,056 - CSW01_03970 0.23 +0.3
817,083 - CSW01_03970 0.34 -0.0
817,115 - CSW01_03970 0.48 +0.4
817,128 + CSW01_03970 0.53 +0.3
817,134 + CSW01_03970 0.56 +0.3
817,134 + CSW01_03970 0.56 +1.7
817,134 + CSW01_03970 0.56 +1.1
817,136 - CSW01_03970 0.57 +0.4
817,236 - -0.0
817,327 - +0.6
817,346 + +0.7
817,573 + CSW01_03975 0.27 -2.4
817,671 - CSW01_03975 0.34 -1.6
817,756 + CSW01_03975 0.40 +1.3
817,769 + CSW01_03975 0.41 -1.2
817,789 + CSW01_03975 0.43 -0.3
817,844 + CSW01_03975 0.47 -0.6
817,976 - CSW01_03975 0.57 -0.5
817,985 + CSW01_03975 0.57 -0.5
818,022 + CSW01_03975 0.60 -0.3
818,045 - CSW01_03975 0.62 -0.3
818,101 - CSW01_03975 0.66 -1.9
818,125 + CSW01_03975 0.68 -0.7

Or see this region's nucleotide sequence