Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01815

Experiment: LB_Aerobic_180MIN_ZN14B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01810 and CSW01_01815 are separated by 204 nucleotidesCSW01_01815 and CSW01_01820 overlap by 34 nucleotides CSW01_01810: CSW01_01810 - tRNA epoxyqueuosine(34) reductase QueG, at 362,316 to 363,425 _01810 CSW01_01815: CSW01_01815 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 363,630 to 364,094 _01815 CSW01_01820: CSW01_01820 - N-acetylmuramoyl-L-alanine amidase, at 364,061 to 365,806 _01820 Position (kb) 363 364 365Strain fitness (log2 ratio) -2 -1 0 1 2 3at 362.659 kb on - strand, within CSW01_01810at 362.659 kb on - strand, within CSW01_01810at 362.659 kb on - strand, within CSW01_01810at 362.670 kb on + strand, within CSW01_01810at 362.686 kb on + strand, within CSW01_01810at 362.696 kb on + strand, within CSW01_01810at 362.742 kb on + strand, within CSW01_01810at 362.758 kb on - strand, within CSW01_01810at 362.760 kb on - strand, within CSW01_01810at 362.767 kb on - strand, within CSW01_01810at 362.772 kb on - strand, within CSW01_01810at 362.774 kb on + strand, within CSW01_01810at 362.774 kb on + strand, within CSW01_01810at 362.779 kb on + strand, within CSW01_01810at 362.784 kb on + strand, within CSW01_01810at 362.853 kb on - strand, within CSW01_01810at 362.886 kb on + strand, within CSW01_01810at 363.100 kb on + strand, within CSW01_01810at 363.100 kb on + strand, within CSW01_01810at 363.163 kb on - strand, within CSW01_01810at 363.215 kb on + strand, within CSW01_01810at 363.228 kb on + strand, within CSW01_01810at 363.244 kb on - strand, within CSW01_01810at 363.274 kb on + strand, within CSW01_01810at 363.291 kb on + strand, within CSW01_01810at 363.441 kb on - strandat 363.446 kb on - strandat 363.446 kb on - strandat 363.446 kb on - strandat 363.482 kb on + strandat 363.550 kb on - strandat 364.083 kb on + strandat 364.148 kb on + strandat 364.156 kb on - strandat 364.189 kb on + strandat 364.197 kb on - strandat 364.248 kb on + strand, within CSW01_01820at 364.248 kb on + strand, within CSW01_01820at 364.256 kb on - strand, within CSW01_01820at 364.266 kb on - strand, within CSW01_01820at 364.268 kb on - strand, within CSW01_01820at 364.273 kb on - strand, within CSW01_01820at 364.278 kb on - strand, within CSW01_01820at 364.462 kb on - strand, within CSW01_01820at 364.510 kb on - strand, within CSW01_01820at 364.528 kb on + strand, within CSW01_01820at 364.557 kb on + strand, within CSW01_01820at 364.557 kb on + strand, within CSW01_01820at 364.612 kb on - strand, within CSW01_01820at 364.612 kb on - strand, within CSW01_01820at 364.638 kb on - strand, within CSW01_01820at 364.673 kb on - strand, within CSW01_01820at 364.696 kb on + strand, within CSW01_01820at 364.704 kb on - strand, within CSW01_01820at 364.724 kb on + strand, within CSW01_01820at 364.841 kb on - strand, within CSW01_01820at 364.985 kb on + strand, within CSW01_01820at 364.993 kb on - strand, within CSW01_01820at 365.016 kb on - strand, within CSW01_01820at 365.065 kb on + strand, within CSW01_01820at 365.073 kb on - strand, within CSW01_01820at 365.083 kb on + strand, within CSW01_01820

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B
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362,659 - CSW01_01810 0.31 -0.2
362,659 - CSW01_01810 0.31 -0.3
362,659 - CSW01_01810 0.31 -0.7
362,670 + CSW01_01810 0.32 +0.5
362,686 + CSW01_01810 0.33 +0.5
362,696 + CSW01_01810 0.34 +0.1
362,742 + CSW01_01810 0.38 -0.0
362,758 - CSW01_01810 0.40 -0.0
362,760 - CSW01_01810 0.40 +0.3
362,767 - CSW01_01810 0.41 +0.4
362,772 - CSW01_01810 0.41 +1.9
362,774 + CSW01_01810 0.41 +0.1
362,774 + CSW01_01810 0.41 +0.7
362,779 + CSW01_01810 0.42 -0.3
362,784 + CSW01_01810 0.42 +0.6
362,853 - CSW01_01810 0.48 +0.1
362,886 + CSW01_01810 0.51 +0.6
363,100 + CSW01_01810 0.71 +0.2
363,100 + CSW01_01810 0.71 +1.0
363,163 - CSW01_01810 0.76 +1.2
363,215 + CSW01_01810 0.81 -1.5
363,228 + CSW01_01810 0.82 +0.4
363,244 - CSW01_01810 0.84 -0.1
363,274 + CSW01_01810 0.86 -0.8
363,291 + CSW01_01810 0.88 +1.3
363,441 - -0.1
363,446 - +1.2
363,446 - +1.5
363,446 - -0.2
363,482 + -0.6
363,550 - +0.2
364,083 + -0.2
364,148 + +0.6
364,156 - -0.4
364,189 + +0.6
364,197 - +2.6
364,248 + CSW01_01820 0.11 -1.4
364,248 + CSW01_01820 0.11 -1.4
364,256 - CSW01_01820 0.11 +2.2
364,266 - CSW01_01820 0.12 +3.6
364,268 - CSW01_01820 0.12 +0.6
364,273 - CSW01_01820 0.12 +0.6
364,278 - CSW01_01820 0.12 +0.6
364,462 - CSW01_01820 0.23 +2.6
364,510 - CSW01_01820 0.26 -2.7
364,528 + CSW01_01820 0.27 +0.6
364,557 + CSW01_01820 0.28 +2.6
364,557 + CSW01_01820 0.28 +3.2
364,612 - CSW01_01820 0.32 +0.6
364,612 - CSW01_01820 0.32 -1.4
364,638 - CSW01_01820 0.33 +0.6
364,673 - CSW01_01820 0.35 -0.4
364,696 + CSW01_01820 0.36 +0.6
364,704 - CSW01_01820 0.37 +1.2
364,724 + CSW01_01820 0.38 -0.4
364,841 - CSW01_01820 0.45 +1.2
364,985 + CSW01_01820 0.53 -1.0
364,993 - CSW01_01820 0.53 -1.4
365,016 - CSW01_01820 0.55 +0.6
365,065 + CSW01_01820 0.58 +1.6
365,073 - CSW01_01820 0.58 +1.2
365,083 + CSW01_01820 0.59 +0.6

Or see this region's nucleotide sequence