Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01115

Experiment: LB_Aerobic_180MIN_ZN14B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_01110 and CSW01_01115 are separated by 163 nucleotidesCSW01_01115 and CSW01_01120 are separated by 365 nucleotides CSW01_01110: CSW01_01110 - YicC family protein, at 216,559 to 217,425 _01110 CSW01_01115: CSW01_01115 - ribonuclease PH, at 217,589 to 218,305 _01115 CSW01_01120: CSW01_01120 - orotate phosphoribosyltransferase, at 218,671 to 219,312 _01120 Position (kb) 217 218 219Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 216.594 kb on - strandat 216.636 kb on - strandat 216.671 kb on + strand, within CSW01_01110at 216.679 kb on - strand, within CSW01_01110at 216.681 kb on - strand, within CSW01_01110at 216.766 kb on + strand, within CSW01_01110at 216.774 kb on - strand, within CSW01_01110at 216.813 kb on - strand, within CSW01_01110at 216.819 kb on - strand, within CSW01_01110at 216.845 kb on - strand, within CSW01_01110at 216.962 kb on + strand, within CSW01_01110at 216.977 kb on + strand, within CSW01_01110at 216.977 kb on + strand, within CSW01_01110at 217.025 kb on + strand, within CSW01_01110at 217.030 kb on + strand, within CSW01_01110at 217.038 kb on - strand, within CSW01_01110at 217.038 kb on - strand, within CSW01_01110at 217.059 kb on - strand, within CSW01_01110at 217.060 kb on - strand, within CSW01_01110at 217.114 kb on - strand, within CSW01_01110at 217.120 kb on + strand, within CSW01_01110at 217.125 kb on - strand, within CSW01_01110at 217.129 kb on + strand, within CSW01_01110at 217.276 kb on + strand, within CSW01_01110at 217.287 kb on + strand, within CSW01_01110at 217.295 kb on + strand, within CSW01_01110at 217.295 kb on - strand, within CSW01_01110at 217.295 kb on - strand, within CSW01_01110at 217.303 kb on - strand, within CSW01_01110at 217.305 kb on + strand, within CSW01_01110at 217.313 kb on - strand, within CSW01_01110at 217.367 kb on + strandat 217.375 kb on - strandat 217.380 kb on - strandat 217.382 kb on + strandat 217.390 kb on - strandat 217.409 kb on + strandat 217.417 kb on - strandat 217.457 kb on - strandat 217.489 kb on + strandat 217.529 kb on + strandat 217.550 kb on - strandat 217.565 kb on - strandat 217.566 kb on + strandat 217.577 kb on + strandat 217.578 kb on + strandat 217.608 kb on + strandat 217.613 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.642 kb on + strandat 217.650 kb on - strandat 217.650 kb on - strandat 217.650 kb on - strandat 217.650 kb on - strandat 217.650 kb on - strandat 217.650 kb on - strandat 217.664 kb on + strand, within CSW01_01115at 217.665 kb on + strand, within CSW01_01115at 217.672 kb on - strand, within CSW01_01115at 217.672 kb on - strand, within CSW01_01115at 217.672 kb on - strand, within CSW01_01115at 217.705 kb on - strand, within CSW01_01115at 217.705 kb on - strand, within CSW01_01115at 217.713 kb on + strand, within CSW01_01115at 217.735 kb on - strand, within CSW01_01115at 217.745 kb on + strand, within CSW01_01115at 217.745 kb on + strand, within CSW01_01115at 217.751 kb on + strand, within CSW01_01115at 217.751 kb on + strand, within CSW01_01115at 217.751 kb on + strand, within CSW01_01115at 217.751 kb on + strand, within CSW01_01115at 217.753 kb on - strand, within CSW01_01115at 217.757 kb on + strand, within CSW01_01115at 217.759 kb on - strand, within CSW01_01115at 217.759 kb on - strand, within CSW01_01115at 217.805 kb on + strand, within CSW01_01115at 217.825 kb on - strand, within CSW01_01115at 217.827 kb on + strand, within CSW01_01115at 217.878 kb on + strand, within CSW01_01115at 217.886 kb on - strand, within CSW01_01115at 217.916 kb on + strand, within CSW01_01115at 217.940 kb on - strand, within CSW01_01115at 217.989 kb on + strand, within CSW01_01115at 218.072 kb on + strand, within CSW01_01115at 218.096 kb on + strand, within CSW01_01115at 218.196 kb on + strand, within CSW01_01115at 218.198 kb on + strand, within CSW01_01115at 218.206 kb on - strand, within CSW01_01115at 218.217 kb on + strand, within CSW01_01115at 218.217 kb on + strand, within CSW01_01115at 218.225 kb on - strand, within CSW01_01115at 218.225 kb on - strand, within CSW01_01115at 218.225 kb on - strand, within CSW01_01115at 218.279 kb on + strandat 218.279 kb on + strandat 218.287 kb on - strandat 218.287 kb on - strandat 218.287 kb on - strandat 218.328 kb on - strandat 218.386 kb on + strandat 218.397 kb on + strandat 218.412 kb on + strandat 218.431 kb on - strandat 218.468 kb on + strandat 218.510 kb on + strandat 218.517 kb on - strandat 218.517 kb on - strandat 218.569 kb on - strandat 218.571 kb on + strandat 218.576 kb on - strandat 218.654 kb on - strandat 218.698 kb on + strandat 218.754 kb on + strand, within CSW01_01120at 218.777 kb on + strand, within CSW01_01120at 218.777 kb on + strand, within CSW01_01120at 218.777 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.787 kb on + strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.795 kb on - strand, within CSW01_01120at 218.836 kb on + strand, within CSW01_01120at 218.858 kb on + strand, within CSW01_01120at 218.879 kb on - strand, within CSW01_01120at 218.881 kb on + strand, within CSW01_01120at 218.943 kb on + strand, within CSW01_01120at 218.950 kb on + strand, within CSW01_01120at 218.951 kb on - strand, within CSW01_01120at 218.951 kb on - strand, within CSW01_01120at 218.951 kb on - strand, within CSW01_01120at 218.957 kb on + strand, within CSW01_01120at 218.973 kb on + strand, within CSW01_01120at 218.973 kb on + strand, within CSW01_01120at 219.015 kb on + strand, within CSW01_01120at 219.074 kb on + strand, within CSW01_01120at 219.083 kb on + strand, within CSW01_01120at 219.106 kb on + strand, within CSW01_01120at 219.106 kb on + strand, within CSW01_01120at 219.187 kb on + strand, within CSW01_01120at 219.202 kb on + strand, within CSW01_01120at 219.239 kb on + strand, within CSW01_01120at 219.239 kb on + strand, within CSW01_01120at 219.247 kb on - strand, within CSW01_01120at 219.247 kb on - strand, within CSW01_01120at 219.260 kb on + strandat 219.268 kb on - strandat 219.276 kb on - strandat 219.285 kb on + strandat 219.290 kb on + strandat 219.290 kb on + strandat 219.298 kb on - strandat 219.300 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B
remove
216,594 - -0.1
216,636 - -1.5
216,671 + CSW01_01110 0.13 +0.0
216,679 - CSW01_01110 0.14 -0.2
216,681 - CSW01_01110 0.14 -0.1
216,766 + CSW01_01110 0.24 -0.5
216,774 - CSW01_01110 0.25 -0.3
216,813 - CSW01_01110 0.29 -1.3
216,819 - CSW01_01110 0.30 +0.4
216,845 - CSW01_01110 0.33 -0.1
216,962 + CSW01_01110 0.46 -0.3
216,977 + CSW01_01110 0.48 -0.1
216,977 + CSW01_01110 0.48 +0.4
217,025 + CSW01_01110 0.54 +0.0
217,030 + CSW01_01110 0.54 +0.3
217,038 - CSW01_01110 0.55 -0.2
217,038 - CSW01_01110 0.55 -1.9
217,059 - CSW01_01110 0.58 -0.5
217,060 - CSW01_01110 0.58 +1.0
217,114 - CSW01_01110 0.64 +0.2
217,120 + CSW01_01110 0.65 +0.3
217,125 - CSW01_01110 0.65 +1.7
217,129 + CSW01_01110 0.66 -1.2
217,276 + CSW01_01110 0.83 -0.2
217,287 + CSW01_01110 0.84 -0.2
217,295 + CSW01_01110 0.85 -0.7
217,295 - CSW01_01110 0.85 -0.2
217,295 - CSW01_01110 0.85 -0.7
217,303 - CSW01_01110 0.86 +0.3
217,305 + CSW01_01110 0.86 -1.2
217,313 - CSW01_01110 0.87 -0.1
217,367 + -0.5
217,375 - +0.4
217,380 - +0.3
217,382 + +0.3
217,390 - +0.1
217,409 + +1.7
217,417 - -1.2
217,457 - -0.1
217,489 + +0.7
217,529 + -0.5
217,550 - -0.2
217,565 - +0.8
217,566 + +0.0
217,577 + -1.2
217,578 + +0.2
217,608 + +0.7
217,613 + +0.4
217,642 + -2.5
217,642 + -0.9
217,642 + -0.0
217,642 + -0.1
217,642 + +0.4
217,642 + +0.2
217,642 + -0.1
217,642 + -0.9
217,642 + -0.9
217,650 - +0.2
217,650 - -0.6
217,650 - -0.2
217,650 - -0.1
217,650 - +0.2
217,650 - -1.3
217,664 + CSW01_01115 0.10 +0.9
217,665 + CSW01_01115 0.11 -2.9
217,672 - CSW01_01115 0.12 +1.3
217,672 - CSW01_01115 0.12 -0.7
217,672 - CSW01_01115 0.12 +0.8
217,705 - CSW01_01115 0.16 +1.7
217,705 - CSW01_01115 0.16 +0.4
217,713 + CSW01_01115 0.17 -0.2
217,735 - CSW01_01115 0.20 -1.6
217,745 + CSW01_01115 0.22 -0.3
217,745 + CSW01_01115 0.22 -0.7
217,751 + CSW01_01115 0.23 +0.3
217,751 + CSW01_01115 0.23 -0.3
217,751 + CSW01_01115 0.23 -0.2
217,751 + CSW01_01115 0.23 +1.9
217,753 - CSW01_01115 0.23 +1.3
217,757 + CSW01_01115 0.23 -1.1
217,759 - CSW01_01115 0.24 -0.4
217,759 - CSW01_01115 0.24 -0.7
217,805 + CSW01_01115 0.30 -0.6
217,825 - CSW01_01115 0.33 -0.2
217,827 + CSW01_01115 0.33 +0.5
217,878 + CSW01_01115 0.40 +0.5
217,886 - CSW01_01115 0.41 -0.4
217,916 + CSW01_01115 0.46 +0.2
217,940 - CSW01_01115 0.49 -0.7
217,989 + CSW01_01115 0.56 -0.3
218,072 + CSW01_01115 0.67 -0.8
218,096 + CSW01_01115 0.71 +0.5
218,196 + CSW01_01115 0.85 +0.6
218,198 + CSW01_01115 0.85 -0.5
218,206 - CSW01_01115 0.86 -2.3
218,217 + CSW01_01115 0.88 -0.0
218,217 + CSW01_01115 0.88 +0.0
218,225 - CSW01_01115 0.89 -0.8
218,225 - CSW01_01115 0.89 +0.0
218,225 - CSW01_01115 0.89 +1.8
218,279 + -0.2
218,279 + +0.0
218,287 - -0.3
218,287 - +0.1
218,287 - -0.3
218,328 - -0.8
218,386 + +0.2
218,397 + +0.6
218,412 + -0.2
218,431 - +0.4
218,468 + -0.9
218,510 + -0.7
218,517 - -0.3
218,517 - +0.3
218,569 - +1.5
218,571 + -0.1
218,576 - +0.2
218,654 - +0.7
218,698 + -1.0
218,754 + CSW01_01120 0.13 -0.2
218,777 + CSW01_01120 0.17 -0.3
218,777 + CSW01_01120 0.17 -0.2
218,777 + CSW01_01120 0.17 -1.0
218,787 + CSW01_01120 0.18 -1.3
218,787 + CSW01_01120 0.18 -0.5
218,787 + CSW01_01120 0.18 -0.6
218,787 + CSW01_01120 0.18 -0.5
218,787 + CSW01_01120 0.18 -1.3
218,787 + CSW01_01120 0.18 -1.1
218,787 + CSW01_01120 0.18 -0.3
218,787 + CSW01_01120 0.18 -0.9
218,787 + CSW01_01120 0.18 -0.5
218,787 + CSW01_01120 0.18 +0.9
218,787 + CSW01_01120 0.18 -0.5
218,787 + CSW01_01120 0.18 +0.0
218,787 + CSW01_01120 0.18 -1.5
218,787 + CSW01_01120 0.18 -1.3
218,787 + CSW01_01120 0.18 -0.7
218,787 + CSW01_01120 0.18 -1.3
218,787 + CSW01_01120 0.18 +0.7
218,787 + CSW01_01120 0.18 -0.4
218,787 + CSW01_01120 0.18 +1.1
218,787 + CSW01_01120 0.18 -0.5
218,787 + CSW01_01120 0.18 -0.0
218,787 + CSW01_01120 0.18 -1.0
218,787 + CSW01_01120 0.18 -1.5
218,787 + CSW01_01120 0.18 +0.0
218,787 + CSW01_01120 0.18 -0.3
218,787 + CSW01_01120 0.18 -1.5
218,787 + CSW01_01120 0.18 -0.6
218,787 + CSW01_01120 0.18 -0.6
218,787 + CSW01_01120 0.18 -0.7
218,787 + CSW01_01120 0.18 -0.1
218,787 + CSW01_01120 0.18 -0.7
218,795 - CSW01_01120 0.19 -0.0
218,795 - CSW01_01120 0.19 +0.5
218,795 - CSW01_01120 0.19 -0.4
218,795 - CSW01_01120 0.19 +0.1
218,795 - CSW01_01120 0.19 +0.3
218,795 - CSW01_01120 0.19 +0.1
218,795 - CSW01_01120 0.19 -0.2
218,795 - CSW01_01120 0.19 -0.9
218,795 - CSW01_01120 0.19 -0.5
218,795 - CSW01_01120 0.19 -1.6
218,795 - CSW01_01120 0.19 -0.6
218,795 - CSW01_01120 0.19 -0.5
218,795 - CSW01_01120 0.19 -0.5
218,795 - CSW01_01120 0.19 -0.6
218,795 - CSW01_01120 0.19 -0.8
218,795 - CSW01_01120 0.19 -0.4
218,836 + CSW01_01120 0.26 -0.8
218,858 + CSW01_01120 0.29 -0.1
218,879 - CSW01_01120 0.32 -0.4
218,881 + CSW01_01120 0.33 -0.2
218,943 + CSW01_01120 0.42 -1.2
218,950 + CSW01_01120 0.43 -0.8
218,951 - CSW01_01120 0.44 -1.8
218,951 - CSW01_01120 0.44 -0.1
218,951 - CSW01_01120 0.44 -0.1
218,957 + CSW01_01120 0.45 +0.8
218,973 + CSW01_01120 0.47 +0.5
218,973 + CSW01_01120 0.47 -0.3
219,015 + CSW01_01120 0.54 -0.5
219,074 + CSW01_01120 0.63 -1.4
219,083 + CSW01_01120 0.64 +0.7
219,106 + CSW01_01120 0.68 -1.9
219,106 + CSW01_01120 0.68 -1.8
219,187 + CSW01_01120 0.80 -1.5
219,202 + CSW01_01120 0.83 -0.6
219,239 + CSW01_01120 0.88 -0.1
219,239 + CSW01_01120 0.88 +0.7
219,247 - CSW01_01120 0.90 -1.4
219,247 - CSW01_01120 0.90 -0.1
219,260 + -0.7
219,268 - +0.7
219,276 - +2.1
219,285 + +0.8
219,290 + +0.7
219,290 + -0.2
219,298 - +1.0
219,300 + +0.7

Or see this region's nucleotide sequence