Experiment: LB_Aerobic_180MIN_ZN14B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00140 and CSW01_00145 are separated by 9 nucleotides CSW01_00145 and CSW01_00150 overlap by 10 nucleotides CSW01_00150 and CSW01_00155 are separated by 11 nucleotides
CSW01_00140: CSW01_00140 - dihydroxy-acid dehydratase, at 24,792 to 26,633
_00140
CSW01_00145: CSW01_00145 - branched-chain-amino-acid transaminase, at 26,643 to 27,602
_00145
CSW01_00150: CSW01_00150 - acetolactate synthase 2 small subunit, at 27,593 to 27,877
_00150
CSW01_00155: CSW01_00155 - acetolactate synthase 2 catalytic subunit, at 27,889 to 29,535
_00155
Position (kb) 27
28 Strain fitness (log2 ratio) -1
0
1
2 at 26.622 kb on + strand at 26.622 kb on + strand at 26.622 kb on + strand at 26.656 kb on + strand at 26.656 kb on + strand at 26.664 kb on - strand at 26.666 kb on + strand at 26.698 kb on + strand at 26.698 kb on + strand at 26.698 kb on + strand at 26.706 kb on - strand at 26.706 kb on - strand at 26.706 kb on - strand at 26.706 kb on - strand at 26.706 kb on - strand at 26.708 kb on + strand at 26.713 kb on + strand at 26.739 kb on - strand, within CSW01_00145 at 26.739 kb on - strand, within CSW01_00145 at 26.739 kb on - strand, within CSW01_00145 at 26.739 kb on - strand, within CSW01_00145 at 26.748 kb on + strand, within CSW01_00145 at 26.748 kb on + strand, within CSW01_00145 at 26.751 kb on - strand, within CSW01_00145 at 26.753 kb on + strand, within CSW01_00145 at 26.756 kb on - strand, within CSW01_00145 at 26.761 kb on - strand, within CSW01_00145 at 26.841 kb on - strand, within CSW01_00145 at 26.873 kb on + strand, within CSW01_00145 at 26.881 kb on - strand, within CSW01_00145 at 26.881 kb on - strand, within CSW01_00145 at 26.881 kb on - strand, within CSW01_00145 at 26.881 kb on - strand, within CSW01_00145 at 26.881 kb on - strand, within CSW01_00145 at 26.881 kb on - strand, within CSW01_00145 at 26.925 kb on + strand, within CSW01_00145 at 26.930 kb on + strand, within CSW01_00145 at 26.930 kb on + strand, within CSW01_00145 at 26.930 kb on + strand, within CSW01_00145 at 26.930 kb on + strand, within CSW01_00145 at 26.930 kb on + strand, within CSW01_00145 at 26.930 kb on + strand, within CSW01_00145 at 26.930 kb on + strand, within CSW01_00145 at 26.930 kb on + strand, within CSW01_00145 at 26.930 kb on + strand, within CSW01_00145 at 26.930 kb on + strand, within CSW01_00145 at 26.930 kb on + strand, within CSW01_00145 at 26.930 kb on + strand, within CSW01_00145 at 26.938 kb on - strand, within CSW01_00145 at 26.938 kb on - strand, within CSW01_00145 at 26.938 kb on - strand, within CSW01_00145 at 26.938 kb on - strand, within CSW01_00145 at 26.938 kb on - strand, within CSW01_00145 at 26.938 kb on - strand, within CSW01_00145 at 26.938 kb on - strand, within CSW01_00145 at 26.938 kb on - strand, within CSW01_00145 at 26.938 kb on - strand, within CSW01_00145 at 26.938 kb on - strand, within CSW01_00145 at 26.940 kb on + strand, within CSW01_00145 at 26.993 kb on - strand, within CSW01_00145 at 27.006 kb on - strand, within CSW01_00145 at 27.014 kb on + strand, within CSW01_00145 at 27.024 kb on - strand, within CSW01_00145 at 27.029 kb on - strand, within CSW01_00145 at 27.034 kb on - strand, within CSW01_00145 at 27.040 kb on + strand, within CSW01_00145 at 27.046 kb on + strand, within CSW01_00145 at 27.074 kb on + strand, within CSW01_00145 at 27.082 kb on - strand, within CSW01_00145 at 27.123 kb on + strand, within CSW01_00145 at 27.129 kb on - strand, within CSW01_00145 at 27.144 kb on + strand, within CSW01_00145 at 27.179 kb on + strand, within CSW01_00145 at 27.197 kb on - strand, within CSW01_00145 at 27.273 kb on - strand, within CSW01_00145 at 27.294 kb on - strand, within CSW01_00145 at 27.306 kb on - strand, within CSW01_00145 at 27.391 kb on + strand, within CSW01_00145 at 27.407 kb on + strand, within CSW01_00145 at 27.439 kb on - strand, within CSW01_00145 at 27.466 kb on + strand, within CSW01_00145 at 27.466 kb on + strand, within CSW01_00145 at 27.466 kb on + strand, within CSW01_00145 at 27.494 kb on + strand, within CSW01_00145 at 27.504 kb on - strand, within CSW01_00145 at 27.653 kb on + strand, within CSW01_00150 at 27.663 kb on - strand, within CSW01_00150 at 27.712 kb on + strand, within CSW01_00150 at 27.712 kb on + strand, within CSW01_00150 at 27.712 kb on + strand, within CSW01_00150 at 27.720 kb on - strand, within CSW01_00150 at 27.720 kb on - strand, within CSW01_00150 at 27.720 kb on - strand, within CSW01_00150 at 27.720 kb on - strand, within CSW01_00150 at 27.731 kb on + strand, within CSW01_00150 at 27.733 kb on + strand, within CSW01_00150 at 27.760 kb on + strand, within CSW01_00150 at 27.771 kb on + strand, within CSW01_00150 at 27.779 kb on - strand, within CSW01_00150 at 27.850 kb on + strand at 27.869 kb on + strand at 27.878 kb on - strand at 27.885 kb on + strand at 27.885 kb on + strand at 27.885 kb on + strand at 27.885 kb on + strand at 27.885 kb on + strand at 27.885 kb on + strand at 27.887 kb on + strand at 27.887 kb on + strand at 27.887 kb on + strand at 27.887 kb on + strand at 27.888 kb on - strand at 27.893 kb on - strand at 27.893 kb on - strand at 27.893 kb on - strand at 27.893 kb on - strand at 27.893 kb on - strand at 27.893 kb on - strand at 27.893 kb on - strand at 27.895 kb on + strand at 27.895 kb on - strand at 27.895 kb on - strand at 27.895 kb on - strand at 27.895 kb on - strand at 27.895 kb on - strand at 27.914 kb on - strand at 27.964 kb on - strand at 27.994 kb on + strand at 28.007 kb on - strand at 28.011 kb on + strand at 28.011 kb on + strand at 28.011 kb on + strand at 28.057 kb on + strand, within CSW01_00155 at 28.057 kb on + strand, within CSW01_00155 at 28.057 kb on + strand, within CSW01_00155 at 28.057 kb on + strand, within CSW01_00155 at 28.057 kb on + strand, within CSW01_00155 at 28.064 kb on + strand, within CSW01_00155 at 28.064 kb on + strand, within CSW01_00155 at 28.064 kb on + strand, within CSW01_00155 at 28.065 kb on - strand, within CSW01_00155 at 28.072 kb on - strand, within CSW01_00155 at 28.072 kb on - strand, within CSW01_00155 at 28.124 kb on + strand, within CSW01_00155 at 28.134 kb on - strand, within CSW01_00155 at 28.151 kb on + strand, within CSW01_00155 at 28.164 kb on - strand, within CSW01_00155 at 28.204 kb on + strand, within CSW01_00155 at 28.204 kb on + strand, within CSW01_00155 at 28.206 kb on + strand, within CSW01_00155 at 28.212 kb on - strand, within CSW01_00155 at 28.212 kb on - strand, within CSW01_00155 at 28.212 kb on - strand, within CSW01_00155 at 28.258 kb on + strand, within CSW01_00155 at 28.261 kb on - strand, within CSW01_00155 at 28.284 kb on - strand, within CSW01_00155 at 28.323 kb on - strand, within CSW01_00155 at 28.338 kb on - strand, within CSW01_00155 at 28.346 kb on - strand, within CSW01_00155 at 28.354 kb on + strand, within CSW01_00155 at 28.355 kb on - strand, within CSW01_00155 at 28.362 kb on - strand, within CSW01_00155 at 28.362 kb on - strand, within CSW01_00155 at 28.378 kb on + strand, within CSW01_00155 at 28.388 kb on + strand, within CSW01_00155 at 28.393 kb on + strand, within CSW01_00155 at 28.393 kb on + strand, within CSW01_00155 at 28.396 kb on - strand, within CSW01_00155 at 28.401 kb on - strand, within CSW01_00155 at 28.414 kb on + strand, within CSW01_00155 at 28.414 kb on + strand, within CSW01_00155 at 28.424 kb on + strand, within CSW01_00155 at 28.432 kb on - strand, within CSW01_00155 at 28.462 kb on - strand, within CSW01_00155 at 28.486 kb on - strand, within CSW01_00155 at 28.496 kb on + strand, within CSW01_00155 at 28.499 kb on - strand, within CSW01_00155 at 28.519 kb on + strand, within CSW01_00155 at 28.524 kb on + strand, within CSW01_00155 at 28.536 kb on + strand, within CSW01_00155 at 28.542 kb on + strand, within CSW01_00155 at 28.542 kb on + strand, within CSW01_00155 at 28.561 kb on + strand, within CSW01_00155 at 28.581 kb on + strand, within CSW01_00155 at 28.589 kb on - strand, within CSW01_00155 at 28.596 kb on - strand, within CSW01_00155 at 28.605 kb on + strand, within CSW01_00155 at 28.605 kb on + strand, within CSW01_00155 at 28.605 kb on + strand, within CSW01_00155 at 28.608 kb on - strand, within CSW01_00155 at 28.613 kb on - strand, within CSW01_00155 at 28.613 kb on - strand, within CSW01_00155 at 28.613 kb on - strand, within CSW01_00155 at 28.618 kb on - strand, within CSW01_00155 at 28.618 kb on - strand, within CSW01_00155 at 28.677 kb on + strand, within CSW01_00155 at 28.690 kb on + strand, within CSW01_00155 at 28.747 kb on + strand, within CSW01_00155 at 28.748 kb on - strand, within CSW01_00155 at 28.755 kb on + strand, within CSW01_00155 at 28.755 kb on - strand, within CSW01_00155 at 28.793 kb on - strand, within CSW01_00155 at 28.794 kb on + strand, within CSW01_00155 at 28.794 kb on + strand, within CSW01_00155 at 28.794 kb on + strand, within CSW01_00155 at 28.802 kb on - strand, within CSW01_00155 at 28.802 kb on - strand, within CSW01_00155 at 28.802 kb on - strand, within CSW01_00155 at 28.802 kb on - strand, within CSW01_00155 at 28.802 kb on - strand, within CSW01_00155 at 28.804 kb on + strand, within CSW01_00155 at 28.821 kb on + strand, within CSW01_00155 at 28.828 kb on + strand, within CSW01_00155 at 28.834 kb on + strand, within CSW01_00155 at 28.836 kb on - strand, within CSW01_00155 at 28.836 kb on - strand, within CSW01_00155 at 28.842 kb on - strand, within CSW01_00155 at 28.842 kb on - strand, within CSW01_00155 at 28.857 kb on - strand, within CSW01_00155 at 28.862 kb on + strand, within CSW01_00155 at 28.870 kb on - strand, within CSW01_00155 at 28.870 kb on - strand, within CSW01_00155 at 28.870 kb on - strand, within CSW01_00155
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_180MIN_ZN14B remove 26,622 + +0.4 26,622 + +0.3 26,622 + +0.2 26,656 + +1.8 26,656 + -0.4 26,664 - +0.7 26,666 + +0.4 26,698 + +0.4 26,698 + +0.1 26,698 + -1.1 26,706 - -0.4 26,706 - -0.1 26,706 - -0.6 26,706 - +0.9 26,706 - -0.5 26,708 + -1.2 26,713 + -0.7 26,739 - CSW01_00145 0.10 +0.7 26,739 - CSW01_00145 0.10 +0.7 26,739 - CSW01_00145 0.10 +0.3 26,739 - CSW01_00145 0.10 -0.0 26,748 + CSW01_00145 0.11 -0.8 26,748 + CSW01_00145 0.11 -1.1 26,751 - CSW01_00145 0.11 -0.2 26,753 + CSW01_00145 0.11 -0.3 26,756 - CSW01_00145 0.12 -0.2 26,761 - CSW01_00145 0.12 +0.3 26,841 - CSW01_00145 0.21 +0.6 26,873 + CSW01_00145 0.24 +0.4 26,881 - CSW01_00145 0.25 -0.4 26,881 - CSW01_00145 0.25 +0.1 26,881 - CSW01_00145 0.25 -0.0 26,881 - CSW01_00145 0.25 +0.3 26,881 - CSW01_00145 0.25 +1.2 26,881 - CSW01_00145 0.25 +0.5 26,925 + CSW01_00145 0.29 +0.5 26,930 + CSW01_00145 0.30 +0.1 26,930 + CSW01_00145 0.30 +1.5 26,930 + CSW01_00145 0.30 -0.4 26,930 + CSW01_00145 0.30 -0.2 26,930 + CSW01_00145 0.30 +0.4 26,930 + CSW01_00145 0.30 +1.7 26,930 + CSW01_00145 0.30 +0.2 26,930 + CSW01_00145 0.30 -1.3 26,930 + CSW01_00145 0.30 +0.5 26,930 + CSW01_00145 0.30 +0.2 26,930 + CSW01_00145 0.30 +0.5 26,930 + CSW01_00145 0.30 +0.2 26,938 - CSW01_00145 0.31 +1.3 26,938 - CSW01_00145 0.31 +0.9 26,938 - CSW01_00145 0.31 -0.3 26,938 - CSW01_00145 0.31 +0.5 26,938 - CSW01_00145 0.31 +1.5 26,938 - CSW01_00145 0.31 -0.2 26,938 - CSW01_00145 0.31 +0.4 26,938 - CSW01_00145 0.31 -0.9 26,938 - CSW01_00145 0.31 +1.0 26,938 - CSW01_00145 0.31 +0.2 26,940 + CSW01_00145 0.31 -0.2 26,993 - CSW01_00145 0.36 +0.5 27,006 - CSW01_00145 0.38 -0.1 27,014 + CSW01_00145 0.39 +1.4 27,024 - CSW01_00145 0.40 -0.0 27,029 - CSW01_00145 0.40 +0.2 27,034 - CSW01_00145 0.41 +0.1 27,040 + CSW01_00145 0.41 -0.0 27,046 + CSW01_00145 0.42 +0.6 27,074 + CSW01_00145 0.45 -0.0 27,082 - CSW01_00145 0.46 -1.1 27,123 + CSW01_00145 0.50 +0.1 27,129 - CSW01_00145 0.51 -0.3 27,144 + CSW01_00145 0.52 +1.0 27,179 + CSW01_00145 0.56 +1.2 27,197 - CSW01_00145 0.58 +1.0 27,273 - CSW01_00145 0.66 +0.1 27,294 - CSW01_00145 0.68 +0.0 27,306 - CSW01_00145 0.69 +0.3 27,391 + CSW01_00145 0.78 +0.1 27,407 + CSW01_00145 0.80 +1.0 27,439 - CSW01_00145 0.83 +1.0 27,466 + CSW01_00145 0.86 -0.5 27,466 + CSW01_00145 0.86 -0.4 27,466 + CSW01_00145 0.86 -0.0 27,494 + CSW01_00145 0.89 -0.5 27,504 - CSW01_00145 0.90 +1.0 27,653 + CSW01_00150 0.21 -0.2 27,663 - CSW01_00150 0.25 -0.2 27,712 + CSW01_00150 0.42 -0.1 27,712 + CSW01_00150 0.42 +0.3 27,712 + CSW01_00150 0.42 +1.0 27,720 - CSW01_00150 0.45 +0.4 27,720 - CSW01_00150 0.45 +1.9 27,720 - CSW01_00150 0.45 +0.2 27,720 - CSW01_00150 0.45 -1.0 27,731 + CSW01_00150 0.48 +0.4 27,733 + CSW01_00150 0.49 +0.8 27,760 + CSW01_00150 0.59 -0.6 27,771 + CSW01_00150 0.62 -0.1 27,779 - CSW01_00150 0.65 +1.2 27,850 + +1.0 27,869 + +0.2 27,878 - +0.3 27,885 + +0.2 27,885 + -0.2 27,885 + -0.6 27,885 + +0.4 27,885 + +0.1 27,885 + -0.5 27,887 + -0.9 27,887 + +0.7 27,887 + +0.2 27,887 + -0.6 27,888 - +0.3 27,893 - +0.3 27,893 - +0.2 27,893 - -0.2 27,893 - -1.0 27,893 - +0.5 27,893 - -0.1 27,893 - +0.5 27,895 + +1.1 27,895 - +0.6 27,895 - -0.0 27,895 - +1.5 27,895 - -0.4 27,895 - +0.7 27,914 - +0.2 27,964 - +0.1 27,994 + +0.9 28,007 - +0.2 28,011 + +0.1 28,011 + -0.0 28,011 + +0.8 28,057 + CSW01_00155 0.10 -0.3 28,057 + CSW01_00155 0.10 +0.2 28,057 + CSW01_00155 0.10 +0.3 28,057 + CSW01_00155 0.10 -1.1 28,057 + CSW01_00155 0.10 -0.7 28,064 + CSW01_00155 0.11 +0.4 28,064 + CSW01_00155 0.11 -0.6 28,064 + CSW01_00155 0.11 -0.3 28,065 - CSW01_00155 0.11 -0.5 28,072 - CSW01_00155 0.11 -0.9 28,072 - CSW01_00155 0.11 +0.8 28,124 + CSW01_00155 0.14 +2.0 28,134 - CSW01_00155 0.15 -0.0 28,151 + CSW01_00155 0.16 -1.1 28,164 - CSW01_00155 0.17 -0.1 28,204 + CSW01_00155 0.19 -0.0 28,204 + CSW01_00155 0.19 +1.0 28,206 + CSW01_00155 0.19 +0.8 28,212 - CSW01_00155 0.20 -0.2 28,212 - CSW01_00155 0.20 +0.0 28,212 - CSW01_00155 0.20 +0.3 28,258 + CSW01_00155 0.22 -0.1 28,261 - CSW01_00155 0.23 +0.7 28,284 - CSW01_00155 0.24 -0.4 28,323 - CSW01_00155 0.26 -0.2 28,338 - CSW01_00155 0.27 -1.3 28,346 - CSW01_00155 0.28 +2.7 28,354 + CSW01_00155 0.28 +0.9 28,355 - CSW01_00155 0.28 -0.4 28,362 - CSW01_00155 0.29 -0.0 28,362 - CSW01_00155 0.29 +0.1 28,378 + CSW01_00155 0.30 -0.3 28,388 + CSW01_00155 0.30 +1.7 28,393 + CSW01_00155 0.31 +0.1 28,393 + CSW01_00155 0.31 +0.6 28,396 - CSW01_00155 0.31 +0.3 28,401 - CSW01_00155 0.31 +0.8 28,414 + CSW01_00155 0.32 +0.1 28,414 + CSW01_00155 0.32 +0.6 28,424 + CSW01_00155 0.32 -0.1 28,432 - CSW01_00155 0.33 +0.3 28,462 - CSW01_00155 0.35 -0.7 28,486 - CSW01_00155 0.36 -0.2 28,496 + CSW01_00155 0.37 +0.5 28,499 - CSW01_00155 0.37 +0.1 28,519 + CSW01_00155 0.38 -0.9 28,524 + CSW01_00155 0.39 +0.1 28,536 + CSW01_00155 0.39 -0.3 28,542 + CSW01_00155 0.40 +0.2 28,542 + CSW01_00155 0.40 +0.0 28,561 + CSW01_00155 0.41 +1.0 28,581 + CSW01_00155 0.42 -0.9 28,589 - CSW01_00155 0.43 +0.2 28,596 - CSW01_00155 0.43 -1.3 28,605 + CSW01_00155 0.43 +0.3 28,605 + CSW01_00155 0.43 +0.7 28,605 + CSW01_00155 0.43 +0.1 28,608 - CSW01_00155 0.44 -1.1 28,613 - CSW01_00155 0.44 +1.3 28,613 - CSW01_00155 0.44 +1.4 28,613 - CSW01_00155 0.44 -0.1 28,618 - CSW01_00155 0.44 -0.6 28,618 - CSW01_00155 0.44 -0.4 28,677 + CSW01_00155 0.48 +0.1 28,690 + CSW01_00155 0.49 -0.7 28,747 + CSW01_00155 0.52 -0.5 28,748 - CSW01_00155 0.52 +0.1 28,755 + CSW01_00155 0.53 +0.5 28,755 - CSW01_00155 0.53 -0.0 28,793 - CSW01_00155 0.55 -0.7 28,794 + CSW01_00155 0.55 +2.2 28,794 + CSW01_00155 0.55 +1.4 28,794 + CSW01_00155 0.55 +0.2 28,802 - CSW01_00155 0.55 +0.9 28,802 - CSW01_00155 0.55 +0.2 28,802 - CSW01_00155 0.55 +0.4 28,802 - CSW01_00155 0.55 +0.5 28,802 - CSW01_00155 0.55 +0.3 28,804 + CSW01_00155 0.56 +0.7 28,821 + CSW01_00155 0.57 +0.0 28,828 + CSW01_00155 0.57 +0.4 28,834 + CSW01_00155 0.57 -0.3 28,836 - CSW01_00155 0.57 +0.3 28,836 - CSW01_00155 0.57 +0.2 28,842 - CSW01_00155 0.58 -0.5 28,842 - CSW01_00155 0.58 -0.1 28,857 - CSW01_00155 0.59 +0.0 28,862 + CSW01_00155 0.59 -0.7 28,870 - CSW01_00155 0.60 -0.1 28,870 - CSW01_00155 0.60 +0.5 28,870 - CSW01_00155 0.60 +1.2
Or see this region's nucleotide sequence